Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_000877395Cyc: Jannaschia aquimarina GSW-M26 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari

phosphate

RS07620 CrcB RS19285 UrtC LptC RS03440 RS06150 RS16915 RS16870 RS04905 RS11595 RS20115 RS08720 RS09115 RS09060 RS08490 RS15285 RS00770 RS13100 RS02040 RS13815 RodA RS01130 MscL SecG RS07820 RS19085 RS14055 RS07685 PstA RS16095 PstC RS11170 RS12140 RS12195 RS16590 RS05720 RS05350 YidC RS10490 RS16400 RS06765 RS08515 RS15020 RS19910 RS03955 RS16710 RS12740 RS04945 RS05955 RS10180 CcmB RS09480 RS18910 RS12330 RS11610

phosphate

RS07670 FlgK

Polyprenyl Biosynthesis Storage Compound Biosynthesis Amino Acid Degradation Polymeric Compound Hormone Biosynthesis Macromolecule Modification tRNA-uridine 2-thiolation Degradation UDP-N-acetyl- undecaprenyl- ditrans,octacis- ditrans,octacis- a [bis(guanylyl UDP-N-acetyl- (4R)-4-hydroxy- a [protein]-L- a [protein] a (1->4)- and selenation (bacteria) a purine an L-asparaginyl- an L-cysteinyl- di-trans,poly-cis polyhydroxybutanoate biosynthesis L-isoleucine degradation I L-threonine α-D-glucosamine diphospho-N- adenosylcobinamide undecaprenyldiphospho- undecaprenyldiphospho- molybdopterin) cys α-D-muramoyl- β C-terminal glu α-D-glucan RS02830 RS17410 Metabolic Regulator Biosynthesis L-valine degradation I L-leucine degradation I L-histidine glycogen degradation II 2-oxoglutarate -isoaspartate [tRNA Asn ] [tRNA Cys ] ATP roseoflavin Amine and Polyamine Biosynthesis -undecaprenyl indole-3-acetate ribonucleoside γ protein-L- 1,4-alpha- degradation I degradation II acetylmuramoyl- N-acetyl-(N- N-acetyl-(N- cofactor L-alanyl- -D- L-glutamate 5'-phosphate gln biosynthesis 5'-triphosphate glutaminyl-tRNA biosynthesis via transamidation Aminoacyl-tRNA Charging phosphate biosynthesis cys L-alanyl-γ-D- acetylglucosaminyl) acetylglucosaminyl) chaperone]- glutamyl-meso-2,6- isoaspartate O- glucan acetyl-CoA ile a glycogen ppGpp metabolism IV (bacteria) leu γ γ bifunctional methyltransferase: branching spermidine biosynthesis III glycine betaine (2E,6E)-farnesyl val thr glutamyl-L-lysyl- muramoyl-L-alanyl- - muramoyl-L-alanyl- -D- L-cysteine diaminopimeloyl- aminoacyl-tRNA aminoacyl-tRNA spermidine biosynthesis I IPP acetyl-CoA C- (indol-3-yl) cysteine his bifunctional 4-hydroxy-2- jaqu_RS10080 30S protein biosynthesis I (Gram- diphosphate branched-chain D-alanyl-D-alanine D-isoglutaminyl-N-(β- isoglutaminyl-L-lysyl- D-alanyl-D-alanine hydrolase: hydrolase: bifunctional RS16145 RS14440 glu acetyltransferase: acetonitrile desulfurase: branched-chain threonine/serine UDP-N- adenosylcobinamide oxoglutarate ribosomal GlgB: glgB pppGpp negative bacteria) nitrile hydratase: branched-chain amino acid D-asparaginyl)-L-lysyl- (glycyl) -D-alanyl-D-alanine protein-L- jaqu_RS18490 jaqu_RS18490 riboflavin SAM arg jaqu_RS00390 jaqu_RS01700 amino acid dehydratase: acetylglucosamine- kinase/ 5 cysteine aldolase/2- protein SAM di-trans,poly-cis- jaqu_RS11255 amino acid aminotransferase: D-alanyl-D-alanine isoaspartate(D- kinase/FAD 1,4-alpha- choline aminotransferase: jaqu_RS13680 urocanate α -N-acetylmuramyl- adenosylcobinamide- desulfurase: D-alanyl-D-alanine dehydro-3-deoxy- aminoacyl- aminoacyl- S6--L- decaprenylcistransferase: [+ 3 isozymes] jaqu_RS11260 cysteine jaqu_RS05895 an -limit dextrin aspartate) O- synthetase: glucan choline jaqu_RS05895 aminotransferase: [+ 2 isozymes] (pentapeptide) phosphate monofunctional jaqu_RS01735 carboxypeptidase/ phosphogluconate tRNA tRNA glutamate adenosylmethionine bifunctional (p)ppGpp uppS jaqu_RS11265 desulfurase: jaqu_RS05895 (2Z)-2-aminobut- methyltransferase: jaqu_RS02005 branching adenosylmethionine dehydrogenase: acetoacetyl-CoA (indol-3-yl) branched-chain 4-alpha- pyrophosphoryl- guanylyltransferase: monofunctional biosynthetic cysteine D-alanyl-D-alanine- aldolase: eda hydrolase: hydrolase: ligase: rimK DctP RS17045 decarboxylase: speD synthetase/guanosine- jaqu_RS01735 branched-chain 2-enoate jaqu_RS17810 protein an L-glutamyl- decarboxylase: speD betA acetamide an [L-cysteine branched-chain amino acid glucanotransferase: undecaprenol N- jaqu_RS18200 biosynthetic peptidoglycan desulfurase: endopeptidase: dacB a protein L-β- arfB arfB 3',5'-bis(diphosphate) 3'- di-trans,octa-cis amino acid GlgB: glgB Gln betaine aldehyde acetoacetyl- amino acid aminotransferase: malQ acetylglucosamine peptidoglycan transglycosylase: roseoflavin [tRNA ] dAdoMet agmatine pyrophosphohydrolase: -undecaprenyl amidase: desulfurase]-S- aminotransferase: 4-imidazolone- jaqu_RS01700 isoaspartate a [protein] C- a (1,6)-α-D- putrescine dAdoMet jaqu_RS02780 a debranched transferase: adenosyl- mtgA adenine jaqu_RS18790 CoA jaqu_RS07415 sulfanyl-L-cysteine jaqu_RS02780 aminotransferase: 4-methyl-2- transglycosylase: UDP-N- glyoxylate pyruvate α-methyl ester terminal α-L- Asp-tRNA(Asn) betaine-aldehyde diphosphate 5-propanoate α cobinamide dinucleotide glucosyl-(1,4) reductase: jaqu_RS02780 oxopentanoate -limit dextrin jaqu_RS11945 mtgA D-ala acetylmuramoyl- Asn Cys glutamate-α- /Glu-tRNA(Gln) dehydrogenase: undecaprenyl- (3S)-3-methyl-2- 2-iminobutanoate ditrans,octacis- UDP phosphate a purine a [bis(guanylyl asn tRNA cys a tRNA -α-glucan RS05730 RS20625 gln polyamine phbB L-alanyl-γ-D- polyamine diphosphate (indol-3-yl)acetate oxopentanoate 3-methyl-2- undecaprenyldiphospho- ribonucleoside a peptidoglycan di-trans,octa-cis ala molybdopterin) L-glutamate amidotransferase aminopropyltransferase: putrescine betB (3R)-3- aminopropyltransferase: GTP ppGpp phosphatase: a [TusA sulfur- oxobutanoate N-acetyl-(N-acetyl-β-D- 5'-diphosphate a peptidoglycan di-trans,octa-cis dimer (S. aureus) -undecaprenyl cofactor glutamyl-meso-2,6- subunit GatB: gatB jaqu_RS00765 biosynthesis I hydroxybutanoyl- poly-[(R)-3- Asp-tRNA(Asn) jaqu_RS17165 glycine betaine jaqu_RS17055 carrier protein]-S- glucosaminyl)muramoyl- dimer (E. faeciums) -undecaprenyl diphosphate chaperone]-S- diaminopimeloyl- Asp-tRNA(Asn) CoA hydroxybutanoate] N-formimino- α /Glu-tRNA(Gln) polyamine di-trans,octa-cis 3-methylbutanoyl- -D- L-alanyl-γ-D-glutamyl-L- diphosphate sulfanyl-L-cysteine D-alanine /Glu-tRNA(Gln) polyamine sulfanyl-L-cysteine L-glutamate D-glucopyranose amidotransferase aminopropyltransferase: arg nucleoside- bifunctional (p)ppGpp -undecaprenyl (2S)-2- CoA 2-oxobutanoate glucopyranose lysyl-D-alanyl-D-alanine RS13825 RS14100 amidotransferase: aminopropyltransferase: class I poly(R)- subunit GatB: gatB jaqu_RS17165 diphosphate synthetase/guanosine- phosphate methylbutanoyl- 1-phosphate gatA gatC jaqu_RS00765 hydroxyalkanoic isobutanoyl-CoA [+ 7 isozymes] kinase: ndk 3',5'-bis(diphosphate) 3'- CoA glucokinase: a 5-phosphooxy- 1 acid synthase: a [TusD sulfur- phosphomannomutase/ a ring-opened 7- ditrans,octacis- (1S,2R)-1- queuosine at an insertion N -(3-aminopropyl) pyrophosphohydrolase: jaqu_RS00180 quinoxaline-2- a [protein]- a DNA methyl a ribonucleoside an L-aspartyl- an L-glutamyl- a nucleoside a [protein]-L- L-glutamyl- agmatine phaC carrier protein]-S- 3-methylcrotonyl- N-formyl- phosphoglucomutase: methylguanine aryl-carrier protein ser C-(indol-3- glu position 34 sequence ser sec ammonium agmatine spermidine carboxyl adenylate undecaprenyldiphospho- L-cysteine phosphotriester Asn Gln RNA a tRNA methionine Gln jaqu_RS18790 diphosphate [tRNA ] [tRNA ] triphosphate TolB [tRNA ] sulfanyl-L-cysteine CoA L-glutamate jaqu_RS12320 in DNA N-acetyl-(N- yl)glycerol of a tRNA Asp element IS30 peptide- (E)-2- propanoyl-CoA adenosylcobalamin- Asp-tRNA(Asn) Asp-tRNA(Asn) DDE-type agmatinase: poly-[(R)-3- methylcrotonoyl- acetylglucosaminyl) 3-phosphate methionine methylcrotonoyl- methylacrylyl-CoA N-formylglutamate dependent /Glu-tRNA(Gln) /Glu-tRNA(Gln) integrase/ Asp-tRNA(Asn) speB hydroxybutanoate] CoA carboxylase: muramoyl-L-alanyl- methylated-DNA-- DNA- (S)-S-oxide GDP CoA amidohydrolase: DNA- acyl carrier ribonucleoside- amidotransferase amidotransferase tRNA transposase/ serine- /Glu-tRNA(Gln) jaqu_RS04230 γ-D-isoglutaminyl- [protein]-cysteine S- tryptophan directed RNA reductase spermidine putrescine a [TusE sulfur enoyl-CoA enoyl-CoA jaqu_RS14690 formamidopyrimidine protein: diphosphate subunit GatB: gatB subunit GatB: gatB glutamyl- recombinase: -tRNA amidotransferase D-glucopyranose N-(β-D-asparaginyl) methyltransferase: synthase polymerase MsrA: msrA RS03435 34 carrier protein]-S hydratase: hydratase: glycosylase: jaqu_RS04980 reductase: Q(34) jaqu_RS13310 ligase: subunit GatB: gatB a uridine in tRNA acetyl/propionyl/ propanoyl N-formylglutamate 6-phosphate jaqu_RS19025 subunit alpha: Asp-tRNA(Asn) Asp-tRNA(Asn) -sulfanylcysteine jaqu_RS17800 jaqu_RS17800 methylcrotonyl- jaqu_RS07100 acyl carrier -L-lysyl-D-alanine jaqu_RS19740 subunit alpha: synthetase serS peptide- phosphate amidohydrolase: methylated-DNA-- jaqu_RS03975 /Glu-tRNA(Gln) /Glu-tRNA(Gln) an insertion[+ 8 isozymes] Asp-tRNA(Asn) (2S,3S)-3- (S)-3-hydroxy- CoA carboxylase protein: jaqu_RS19435 GluQRS: methionine jaqu_RS13935 bifunctional DNA- [protein]-cysteine S- vitamin B12- amidotransferase: amidotransferase: sequence IS30 /Glu-tRNA(Gln) tRNA 2- hydroxy-2- isobutanoyl-CoA subunit alpha: acetate kinase: jaqu_RS10785 tryptophan [+ 2 isozymes] gluQRS (S)-S-oxide formamidopyrimidine monofunctional methyltransferase: dependent gatA gatC gatA gatC with integrated an L-seryl- amidotransferase: thiouridine(34) methylbutanoyl- jaqu_RS11645 jaqu_RS11365 glu synthase an L-asparaginyl- an L-glutaminyl- reductase RS05810 tRNA charging Detoxification glycosylase/ biosynthetic ribonucleotide transposon sec gatA gatC synthase CoA jaqu_RS16840 subunit [tRNA Asn ] [tRNA Gln ] [tRNA ] MsrA: msrA 3-methylglutaconyl- DNA-(apurinic a quinoxaline-2- peptidoglycan reductase: glutamyl- a protein-L- MnmA: mnmA propanoate beta: trpB RNA CoA or apyrimidinic carboxyl-[aryl- transglycosylase: jaqu_RS12185 queuosine at methionine- glu (S)-3-hydroxy- reactive oxygen species degradation AMP a 2'- an L-glutaminyl- glu a tRNA site) lyase: mutM carrier protein] mtgA a [protein]-S- position 34 (S)-S-oxide Gln 34 isobutanoate [DNA] D-glyceraldehyde deoxyribonucleoside [tRNA ] a 2-thiouridine methyl-L-cysteine Asp 2-methylacetoacetyl- 3-phosphate trp 5'-diphosphate of a tRNA RS02130 Gly Phe asp Ala ser in tRNA 3-hydroxyisobutyrate L-tyrosine degradation I superoxide gly a tRNA phe a tRNA tRNA asp a tRNA ala ser a tRNA a [DNA]- a peptidoglycan di-trans,octa-cis elongator glutamate-- CoA dehydrogenase: a 5'-phospho- 2,6-diamino-4- pro a tRNA Pro lys a tRNA Lys arg a tRNA Arg leu a tRNA Leu thr a tRNA Thr met initiator tRNA Met met val a tRNA Val cys a tRNA Cys his a tRNA His tyr a tRNA Tyr ile a tRNA Ile trp a tRNA Trp tRNA uridine-5- 4-oxo-2-pentenal Met HMG-CoA superoxide nucleotide- hydroxy-5-(N-methyl) dimer (E. faecium -undecaprenyl tRNA tRNA ligase: carboxymethylaminomethyl(34) mmsB [DNA] acetyl-CoA C- 3'-phosphate formamidopyrimidine , tetrapeptide) diphosphate jaqu_RS11795 asn tRNA Asn gln a tRNA Gln (S)-methylmalonate- hydroxymethylglutaryl- tyr dismutase: glycine-- phenylalanine- aspartate- alanine- serine- synthesis GTPase MnmE: mnmE acyltransferase: F0F1 ATP leucine-- glutamate-- isoleucine-- semialdehyde CoA lyase: aspartate/ jaqu_RS11135 H + H + RS12235 tRNA ligase: -tRNA ligase: proline-- lysine-- -tRNA -tRNA arginine-- threonine- methionine-- methionine-- valine-- cysteine-- histidine-- tyrosine-- -tRNA tryptophan- tRNA uridine-5- jaqu_RS12570 synthase jaqu_RS04625 jaqu_RS14640 tRNA ligase: tRNA ligase: ligase: ligase: tRNA ligase: tRNA ligase: -tRNA tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: tRNA ligase: ligase: tRNA ligase: -tRNA jaqu_RS15465 tyrosine/aromatic hydrogen a 7,8-dihydro- phosphoenol hydrogen carboxymethylaminomethyl(34) H O menadione NADH H + a protein with glutathione an N-modified 4-hydroxy- A(H2) NADH 34 acetyl-CoA C- aminotransferase: 8-oxoguanine diphosphate 2 glu a (6S)-5- a tRNA precursor a cytidine lys 3',5'-ADP jaqu_RS04640 pheS jaqu_RS00490 jaqu_RS02805 aspS alaS jaqu_RS05530 jaqu_RS07490 ligase: thrS jaqu_RS11525 jaqu_RS11525 jaqu_RS06310 jaqu_RS12885 jaqu_RS14965 jaqu_RS16890 jaqu_RS17250 serS jaqu_RS18880 ligase: trpS synthesis enzyme MnmG: mnmG peroxide dGDP pyruvate peroxide 3-(4- formyltetrahydrofolate a disulfide bond aminoacyl-[tRNA] L-threonine in tRNA Ile2 acyltransferase: acetoacetate jaqu_RS02390 in DNA 3'(2'),5'- a 5-carboxymethylaminomethyl- hydroxyphenyl) F0F1 ATP an L-methionyl- jaqu_RS01845 catalase/ bisphosphate H + H + an L-phenylalanyl- an L-prolyl- an L-lysyl- an L-aspartyl- an L-alanyl- an L-arginyl- an L-leucyl- an L-threonyl- an L-methionyl- an L-glutamyl- an L-valyl- an L-cysteinyl- an L-histidyl- an L-tyrosyl- an L-seryl- an L-isoleucyl- an L-tryptophanyl- an L-asparaginyl- an L-glutaminyl- 2-thiouridine 34 in tRNA catalase/ NAD(+) synthase DctP a glycyl-[tRNA Gly ] [elongator (S)-3-amino-2- hydrogencarbonate pyruvate peroxidase RdgB/HAM1 family non- NADH-quinone [tRNA Phe ] [tRNA Pro ] [tRNA Lys ] [tRNA asp ] [tRNA Ala ] [tRNA Arg ] [tRNA Leu ] [tRNA Thr ] [initiator tRNA Met ] [tRNA Glu ] [tRNA Val ] [tRNA Cys ] [tRNA His ] [tRNA Tyr ] [tRNA ser ] [tRNA Ile ] [tRNA Trp ] [tRNA Asn ] [tRNA Gln ] DNA- bifunctional glutathione- aminoacyl-tRNA ribonuclease D: low specificity peroxidase diphosphatase: tRNA nucleotidase tRNA Met ] methylpropanoate 4-hydroxyphenylpyruvate HPI: katG canonical purine NTP oxidoreductase: acetyl-CoA propanoyl-CoA formamidopyrimidine folylpolyglutamate dependent hydrolase: jaqu_RS17025 pyruvate L-threonine nudC lysidine(34) CysQ: H O hydroxyl radical pyrophosphatase: rdgB nuoE jaqu_RS11850 HPI: katG dioxygenase: hppD catalase/ 2 glycosylase: synthase/ disulfide-bond jaqu_RS18490 kinase: pyk aldolase: synthetase jaqu_RS07360 a reduced L-proline degradation I jaqu_RS11860 ribonuclease catalase/ a 5-aminomethyl-2- peroxidase jaqu_RS07100 manganese- dihydrofolate oxidoreductase: D: rnd jaqu_RS01995 β TilS: tilS H O c-type homogentisate aminoacyl- peroxidase reduced - 3'(2'),5'- 2 RS16385 thiouridine 34 in tRNA HPI: katG dependent inorganic NADH-quinone synthase: yghU cytochrome L-glutamate bifunctional DNA- tRNA HPI: katG nicotinamide D- bisphosphate RS20995 an oxidized Fatty Acid and Lipid Biosynthesis pro pyrophosphatase: oxidoreductase: jaqu_RS09645 AMP degradation VI homogentisate formamidopyrimidine glutaredoxin hydrolase: pyruvate glycolaldehyde ribonucleotide a lysidine 34 nucleotidase O c-type Nucleoside and Nucleotide Biosynthesis L-citrulline degradation jaqu_RS03485 jaqu_RS01345 a nucleoside 5'- dGTP 2 (to pyruvate) bifunctional 1,2-dioxygenase: O glycosylase/ 3: grxC arfB a tRNA gly in tRNA Ile2 CysQ: cysQ cytochromea reduced 2 nuoH nuoI monophosphate palmitate biosynthesis proline jaqu_RS14485 H O c-type gondoate biosynthesis DNA-(apurinic a (6S)-5- A H O 2 oleate biosynthesis phosphatidylserine and a 5-methylaminomethyl- jaqu_RS01375 nuoK 2 RS03820 (type II fatty acid synthase) palmitoleate superpathway of pyrimidine glu dehydrogenase/L- AMP cytochrome cytochrome (anaerobic) 34 4-maleyl- or apyrimidinic formyltetrahydrofolate a protein with IV (anaerobic) biosynthesis I (from phosphatidylethanolamine superpathway of superpathway of guanosine adenine and superpathway of pyrimidine deoxyribonucleoside salvage 5-aminoimidazole ribonucleotide biosynthesis I superpathway of pyrimidine pyrimidine nucleobases salvage II 2-thiouridine in tRNA L-citrulline H + jaqu_RS01390 nuoN an uncharged c oxidase an oxidized ribonucleotides de novo biosynthesis glutamate gamma- acetoacetate site) lyase: mutM phosphate GSSG an N-modified (5Z)-dodec-5-enoate) biosynthesis I adenosine nucleotides nucleotides de novo biosynthesis I adenosine ornithine reduced L- O c-type nucleobases salvage tRNA 2- semialdehyde amino acid tRNA 2 an acetoacetyl-[acp] a (3R)-3- an oleoyl-[acp] salvage VI 2'-deoxycytidine cytosine carbamoyltransferase: cysteine residues cytochromea reduced a (5Z)-dodec- a CDP-diacylglycerol de novo biosynthesis I PRPP selenouridine(34) L-serine degradation hydroxydodecanoyl-[acp] gln uracil cytosine deaminase: dehydrogenase + H O c-type beta-ketoacyl- hydrogencarbonate argF a [DNA]- NAD menadiol 2 cytochrome- 3-hydroxyacyl- 5-enoyl-[acp] synthase a 5'-phospho- 7,8-dihydro- ChoX 3-oxoacyl- beta-ketoacyl- ACP synthase IMP nucleoside uracil jaqu_RS15725 carbamoyl phosphate (S)-1-pyrroline-PutA: putA nucleotide- 4-oxo-2-pentenal c oxidase, cytochrome ACP dehydratase IMP adenosine amidophosphoribosyltransferase: MnmH: mnmH (2S, 3S)-3- 4-fumaryl- [DNA] 8-oxoguanine an oxidized ACP ACP synthase asp deaminase: phosphoribosyltransferase: upp uracil 3'-phosphate cbb3-type FabZ: fabZ I: fabB a 3-sn-phosphatidyl- adenosine jaqu_RS10465 a 5-methylaminomethyl- methylaspartate 5-carboxylate ser O c-type reductase carbamoyl- UMP acetoacetate 2 I: fabB beta-ketoacyl- L-serine IMP kinase: jaqu_RS03015 dCMP uracil 2-(S-geranyl) carbamoyl-phosphate threonine/serine a cytochromereduced FabG: fabG bifunctional 3- phosphate 5-phospho-β- gly beta-ketoacyl- dehydrogenase: phosphoribosyltransferase: upp 34 synthase large H O c-type hydroxydecanoyl- ACP synthase phosphatidylserine adenylosuccinate jaqu_RS16860 cytidine UMP kinase: jaqu_RS11195 thiouridine in tRNA dehydratase: a peptidoglycan a mature a protein-L- a glucosylated 2 (d)CMP kinase: D-ribosylamine a purine base a single a [DNA]-3'- + a 5'-phospho- a lipid II phosphoenol a D-tyrosyl- N-acetyl- a (3R)-3- ACP synthase II: fabF synthase guaB AMP deaminase: subunit: carB NAD sulfite GSSH RS02065 cytochrome FlgA ACP dehydratase/ decarboxylase: synthase: UMP tRNA 2- jaqu_RS13680 dimer (E. faeciums) peptidoglycan a protein Tyr methionine- glycogenin an oxidized jaqu_RS18590 lesion in DNA stranded DNA hydroxyl [DNA] (n) dADP pyruvate [tRNA ] L-citrulline hydroxybutanoyl-[acp] II: fabF an (11Z)-3-oxo- large jaqu_RS00315 glutamine-hydrolyzing L-glutamate-5- 1,4-alpha- trans-2- a (7Z)-3-oxotetradec- jaqu_RS08940 jaqu_RS02860 UDP selenouridine(34) threonine/serine (meso-DAP ATP-dependent (R)-S-oxide O c-type icos-11-enoyl-[acp] subunit: carB dCDP phosphoribosylamine- mesaconate fumarate peptide- 2 3-hydroxyacyl- XMP synthase carbamoyl-phosphate semialdehyde containing) glucan cytochromea reduced decenoyl-ACP 7-enoyl-[acp] an L-1- -glycine ligase: purD nucleoside- dehydratase: D-alanyl-D-alanine D-alanyl-D-alanine rhodanese Clp protease methionine 3-oxoacyl-ACP glutamine- 2'-deoxyuridine MnmH: mnmH synthase small DNA- exodeoxyribonuclease ATP-dependent branching H O c-type ACP isomerase: fabA phosphatidylethanolamine nucleoside- diphosphate kinase: ndk bifunctional jaqu_RS19690 carboxypeptidase/ carboxypeptidase/ ATP-binding D-tyrosyl- acetylornithine 2 3-oxoacyl- reductase adenylo-succinate glutamine- a 5-methylaminomethyl- 2-aminoprop- formamidopyrimidine VII large subunit: DNA ligase: domain- (R)-S-oxide protein cytochrome dehydratase a (2E)-dodec-2-enoyl-[acp] hydrolyzing diphosphate subunit: carA proline D-alanyl-D-alanine- D-alanyl-D-alanine- subunit ClpA: clpA tRNA(Tyr) deacetylase: RS12505 an oxidized DctP ACP GAR UTP 2-(Se-phospho) 2-enoate glycosylase: jaqu_RS02950 jaqu_RS11300 endolytic containing pyruvate reductase: FabZ: fabZ FabG: fabG long-chain fatty carbamoyl- hydrolyzing GMP thymidine kinase: ndk dehydrogenase/L- argE GlgB: glgB adenylosuccinate 34 carbamate endopeptidase: dacB transglycosylase endopeptidase: dacB kinase: pyk ATP-dependent deacylase: jaqu_RS04400 O c-type reductase phosphate synthase: guaA selenouridine in tRNA jaqu_RS07100 NAD- protein: 2 bifunctional 3- a (3R,11Z)-3-hydroxy- acid activation kinase: CTP synthase: (S)-citramalate glutamate gamma- L-tryptophan exodeoxyribonuclease jaqu_RS00760 1,4-alpha- cytochrome bifunctional 3- FabG: fabG lyase: jaqu_RS21300 dCTP phosphoribosylglycinamide tRNA 2- MltG: mltG jaqu_RS00750 Clp protease: [+ 4 isozymes] icos-11-enoyl-[acp] synthase jaqu_RS03355 thymidine jaqu_RS02850 semialdehyde degradation I bifunctional DNA- VII small subunit: dependent glucan hydroxydecanoyl- hydroxydecanoyl- a (3R,7Z)-3- a long-chain adenylosuccinate formyltransferase: selenouridine(34) a peptidoglycan [+ 8 isozymes] a N- jaqu_RS18255 clpX a [protein]-L- RS11690 small GMP L-cysteine (via anthranilate) formamidopyrimidine jaqu_RS05915 DNA ligase acetate ACP dehydratase/ ACP dehydratase/ hydroxytetradec- jaqu_RS04460 CTP dehydrogenase tetramer with a D-ala D-ala L-citrulline methionine branching RS06760 bifunctional 3- fatty acidacyl-CoA subunit: carA lyase: jaqu_RS02185 dUMP synthase degradation II citramalate 2-iminopropanoate LigA: ligA acetylglucosamine- pyruvate a peptide trans-2- thymidine PutA: putA glycosylase/ dATP Tyr protein trans-2- 7-enoyl-[acp] hydroxydecanoyl- MnmH: mnmH synthase: trp D,D cross-link a mature GlcNAc-1,6- -N-acetylmuramyl- glutathione thiosulfate D-tyrosine a tRNA decenoyl-ACP synthetase: kinase: FGAR CO DNA-(apurinic a single-stranded GlgB: glgB decenoyl-ACP bifunctional 3- ACP dehydratase/ guanylate a 5-methylaminomethyl- 2 a ribonucleoside (Enterococcus peptidoglycan anhMurNAc- (tetrapeptide) jaqu_RS03860 AMP cys jaqu_RS14970 (n) carbamoyl 34 glu or apyrimidinic oligodeoxyribonucleotide isomerase: fabA isomerase: fabA hydroxydecanoyl- trans-2- a long-chain asp kinase: gmk jaqu_RS03355 adenine and 2-selenouridine 5'-monophosphate faecium) (meso-DAP L-Ala-γ-D-Glu- pyrophosphoryl- a glycogen phosphate phosphoribosylformylglycinamidine cystathionine site) lyase: mutM [DNA] NMN ACP dehydratase/ decenoyl-ACP fatty acyl-CoA adenosine salvage I in tRNA AMP DAP-D-Ala undecaprenol RS12425 a (3Z)-dodec-3-enoyl-[acp] adenylate kinase: synthase: purS purQ guanine and guanosine salvage gamma-lyase: N-Formyl-L- containing) RS04150 a (2E)-but-2-enoyl-[acp] trans-2- isomerase: fabA acetate pyruvate pyruvate jaqu_RS19450 GDP phosphoribosylformylglycinamidine jaqu_RS03670 kynurenine decenoyl-ACP aspartate 2-aminoprop- a [DNA]- a 5'-phospho- a modified beta-ketoacyl- 3-hydroxyacyl- adenylate kinase: adenosine synthase subunit PurL: purL 4-oxo-2-pentenal enoyl-ACP isomerase: fabA carbamoyltransferase 2-enoate nucleotide- [DNA] nucleobase ACP synthase ACP dehydratase jaqu_RS17570 dTMP purine-nucleoside reductase catalytic subunit: FGAM guanosine tRNA processing 3'-phosphate I: fabB 3-hydroxyacyl- FabZ: fabZ phosphorylase: FabI: fabI jaqu_RS05700 nucleoside- vitamin B12- dTMP purine-nucleoside RS16460 ACP ADP deoD L-arginine L-kynurenine beta-ketoacyl- a (2E,11Z)-icosa- diphosphate dependent phosphorylase: a polycistronic an O 4 - RS19385 enoyl-ACP dehydratase kinase: tmk adenine phosphoribosylformylglycinamidine L-glutamine L-aspartate L-glutamine ditrans,octacis- a peptidoglycan with a methylated a [protein]- lipid II (meso a 2'- DNA with adenine:7,8- (S)-1-pyrroline- a (1->4)- ACP synthase 2,11-dienoyl-[acp] kinase: ndk ribonucleotide deoD degradation MoO - L-threo-3- Ala cyclo-ligase: jaqu_RS04455 tRNA precursor degradation I γ 2-oxoglutarate methylthymine deoxyribonucleoside dihydro-8- 2 α reductase: FabZ: fabZ N-carbamoyl- dTDP 2-iminopropanoate degradation I degradation II undecaprenyldiphospho- (L-alanyl- -D-glutamyl- nucleobase L-cysteine diaminopimelate [DNA] ATP 5-carboxylate a glycyl-[tRNA ] glu ala ser -D-glucan II: fabF vitamin B12- reductase: guanine III (arginine kynureninase: in DNA molybdopterin phenylserine bifunctional 1,4-alpha- jaqu_RS13660 enoyl-ACP L-aspartate inosine-5'-phosphate biosynthesis I adenine N-acetyl-(N-acetyl-β-D- L-lysyl-D-alanyl-D- within DNA containing) 5'-triphosphate oxoguanine mismatch a (2E,7Z)-tetradeca- dependent jaqu_RS12185 nucleoside- AIR decarboxylase/ kynU cofactor proline threonine/serine a (5Z)-3-oxo- reductase: gln asp gln glucosaminyl)muramoyl- alanine) pentapeptide glucan RS04260 2,7-dienoyl-[acp] dihydroorotase: ribonucleotide diphosphate phosphoribosyltransferase: agmatinase pathway) dehydratase: a butanoyl-[acp] tetradec-5-enoyl-[acp] jaqu_RS13660 GTP adenosylcobalamin- xanthine L-alanyl-γ-D-glutamyl-L- alpha- methylated-DNA-- dehydrogenase/L- branching jaqu_RS19990 arg Asp-tRNA(Asn) anthranilate aspartate/ glutamate monofunctional DNA A/G-specific low specificity D-tyrosyl- glutamate-- jaqu_RS13680 enoyl-ACP pyrC reductase: AIR kinase: ndk lysyl-D-alanyl-D-alanine ketoglutarate- [protein]-cysteine S- molybdenum cofactor glutamate gamma- protein RS12315 3-oxoacyl-ACP enoyl-ACP dependent phosphoribosyltransferase: gpt a tRNA precursor a tRNA precursor /Glu-tRNA(Gln) tyrosine/aromatic synthase large biosynthetic polymerase adenine L-threonine tRNA(Tyr) cysteine ligase: beta-ketoacyl- dihydroorotase: jaqu_RS12185 pyruvate methyltransferase: guanylyltransferase semialdehyde threonine/serine GlgB: glgB reductase reductase: reductase ribonucleoside- 5-(carboxyamino) dTTP AMP with a 5' with a 5' amidotransferase subunit: gltB dependent peptidoglycan III subunit chi: glycosylase: aldolase: deacylase: jaqu_RS05670 ACP synthase aminotransferase: dehydrogenase dehydratase: FabG: fabG jaqu_RS13660 FabI: fabI pyrC adenosylcobalamin- diphosphate imidazole ribonucleotide extension and extension and a subunit GatB: gatB glu dioxygenase jaqu_RS19025 transglycosylase: jaqu_RS02155 jaqu_RS07320 MobA: mobA jaqu_RS01995 jaqu_RS00760 1,4-alpha- II: fabF GMP agmatine jaqu_RS02390 monofunctional PutA: putA jaqu_RS19690 MepA enoyl-ACP fatty acid elongation -- saturated dependent reductase: synthase: jaqu_RS03305 adenine and adenosine salvage III a long 3' trailer short 3' extension [+ 7 isozymes] oxaloacetate AlkB: methylated-DNA-- mtgA glucan a (3R,5Z)-3-hydroxy- (S)-dihydroorotate biosynthetic [+ 8 isozymes] γ-L-glutamyl- pyruvate beta-ketoacyl- a gondoyl-[acp] ribonucleoside- jaqu_RS19740 jaqu_RS16955 adenylyl branching reductase agmatinase: glu L-glutamate peptidoglycan [protein]-cysteine S- glu ACP synthase tetradec-5-enoyl-[acp] N5-CAIR an apurinic site D-alanine FabI: fabI diphosphate ribonuclease L-glutamate degradation X methyltransferase: molybdenum benzaldehyde Ala protein quinone- speB transglycosylase: lipid II (meso di-trans,octa-cis adenine within DNA gly a tRNA gly RS03155 I: fabB bifunctional 3- an acetoacetyl-[acp] reductase: adenine P protein a nucleobase jaqu_RS16840 [DNA] cofactor GlgB: glgB a (7Z)-tetradec- dependent ribonuclease D: degradation I mtgA formaldehyde succinate diaminopimelate -undecaprenyl hydroxydecanoyl- jaqu_RS19740 5-(carboxyamino)imidazole pyrimidine deoxyribonucleotides de novo biosynthesis III component: L-asparagine RS01515 7-enoyl-[acp] dihydroorotate dGDP purine-nucleoside ribonuclease putrescine glu within DNA containing) diphosphate a glycogen a 3-oxohexanoyl-[acp] ACP dehydratase/ ribonucleotide mutase: purE jaqu_RS17025 dehydrogenase: phosphorylase: D: rnd rnpA degradation I a [protein]-S- trans-2- beta-ketoacyl- UDP CTP guanine and guanosine salvage II ribonuclease glu glutamate a peptidoglycan with di-trans,octa-cis a thymine in DNA jaqu_RS10325 dADP nucleoside- asp deoD ribonuclease D: a tRNA precursor L-alanine γ methyl-L-cysteine 3-oxoacyl- decenoyl-ACP ACP synthase CAIR vitamin B12-dependent D: rnd ribonuclease glutamate dehydrogenase: (L-alanyl- -D-glutamyl- -undecaprenyl PRPP diphosphate adenosine jaqu_RS17025 degradation IV asn ACP I: fabB orotate ribonucleotide reductase: PH: rph with a short dehydrogenase: jaqu_RS08840 L-lysyl-D-alanyl-D- diphosphate RS14165 isomerase: fabA nucleoside- 2-oxoglutarate RS15010 reductase a 3-oxoacyl-[acp] kinase: ndk jaqu_RS12185 CDP guanosine 3' extension jaqu_RS08840 asparaginase: alanine) pentapeptide 3-hydroxyacyl- beta-ketoacyl- diphosphate phosphoribosylaminoimidazolesuccinocarboxamide adenosine 2-oxoglutarate ala FabG: fabG ACP synthase orotate adenosylcobalamin- vitamin B12-dependent jaqu_RS12715 ACP dehydratase kinase: ndk dGTP synthase: jaqu_RS17890 deaminase: II: fabF phosphoribosyltransferase: dependent ribonucleoside- ribonucleotide reductase: a tRNA alanine asp an O 6 - a [Co(II) proline a 2'- an N-terminal- a (1->4)- a (3R)-3- FabZ: fabZ jaqu_RS00330 ribonuclease D: a mature peptidoglycan a [protein]- a D-aminoacyl- a D-aspartyl- jaqu_RS10425 dehydrogenase: ald A(H) H O γ-L-glutamyl- carbonic acid α hydroxyhexanoyl-[acp] dATP diphosphate reductase: jaqu_RS12185 precursor with (meso-diaminopimelate methylguanine betaine-specific deoxyribonucleoside 2 L-allo-threonine L-methionyl-L- asp gly -D-glucan a (2E,5Z)-tetradeca- a (9Z)-3-oxohexadec- SAICAR guanine ribonuclease jaqu_RS17025 pyruvate dGTP L-cysteine [DNA] [tRNA] GTP [tRNA ] RS16535 jaqu_RS19740 adenosylcobalamin- inosine a 5' extension containing) in DNA corrinoid protein] 5'-triphosphate seryl-[protein] D-alanine 1,4-alpha- 3-hydroxyacyl- 2,5-dienoyl-[acp] 9-enoyl-[acp] beta-ketoacyl- 3-oxoacyl-ACP PH: rph ribonuclease RS09510 orotidine 5'- adenylosuccinate dUDP dependent ribonucleoside- glucan ACP ACP synthase reductase D: rnd carbonic enoyl-ACP 3-oxoacyl- phosphate ribonuclease methylated-DNA-- DUF4445 branching RS11695 I: fabB adenine salvage lyase: jaqu_RS21300 nucleoside- diphosphate reductase: purine-nucleoside xanthine endolytic DNA D-tyrosyl- elongation low specificity type I methionyl D-tyrosyl- glutathione anhydrase: dehydratase ACP FabG: fabG P protein deoxyguanosinetriphosphate [protein]-cysteine S- domain- protein reductase: adenylosuccinate diphosphate kinase: ndk jaqu_RS19740 phosphorylase: phosphoribosyltransferase: gpt transglycosylase polymerase tRNA(Tyr) L-threonine aminopeptidase: tRNA(Tyr) synthase: FabZ: fabZ reductase beta-ketoacyl- orotidine-5'- factor 4: lepA jaqu_RS05865 GlgB: glgB jaqu_RS13660 deoD component: Fatty Acid and Lipid Degradation MltG: mltG triphosphohydrolase: methyltransferase: containing III subunit chi: deacylase: aldolase: map deacylase: gshB RS15160 FabG: fabG ACP synthase phosphate lyase: jaqu_RS02185 dUTP dCDP [+ 4 isozymes] bifunctional 3- enoyl-ACP a 2,3,4-saturated a (3R)-3-hydroxyacyl- rnpA protein S-nitrosylation jaqu_RS05230 jaqu_RS19025 protein: jaqu_RS02155 jaqu_RS00760 jaqu_RS01995 jaqu_RS00760 1,4-alpha- a (3R,9Z)-3- II: fabF adenine GMP [+ 8 isozymes] hydroxydecanoyl- bifunctional 3- decarboxylase: AICAR dUTP diphosphatase: dut nucleoside- β jaqu_RS02500 glucan RS09475 reductase hydroxyhexadec- fatty acyl-[acp] [acyl-carrier protein] hypoxanthine and denitrosylation oleate -oxidation methylated-DNA-- [+ 8 isozymes] CO H O ACP dehydratase/ hydroxydecanoyl- pyrF diphosphate kinase: ndk fatty acid β-oxidation I (generic) H + an N-terminal 2 2 FabI: fabI nucleoside triphosphate a mature peptidoglycan [protein]-cysteine S- phosphate met norophthalmate branching SecY trans-2- 9-enoyl-[acp] ACP dehydratase/ bifunctional a [protein]- a mature peptidoglycan a [Co(I) proline an uncharged GDP L-seryl-[protein] UMP pyrophosphohydrolase: triphosphate methyltransferase: acetaldehyde asp protein DctP bifunctional 3- trans-2- adenine deaminase: adenine phosphoribosylaminoimidazolecarboxamide dCTP xanthine xanthine and xanthosine salvage L-cysteine oleate with (L-alanyl-γ-D- strand (non- 2'-deoxyguanosine A a D-amino acid gly tRNA D-aspartate decenoyl-ACP a (5Z)-tetradec-5-enoyl-[acp] mazG a (3Z)-alk-3- jaqu_RS16840 betaine-specific [DNA] tRNA GlgB: glgB isomerase: fabA hydroxydecanoyl- decenoyl-ACP UMP kinase: jaqu_RS07230 phosphoribosyltransferase: formyltransferase/IMP cyclohydrolase: purH phosphoribosyltransferase: gpt enoyl-CoA glutamyl-meso-2,6- reducing terminus) corrinoid protein] ACP dehydratase/ jaqu_RS11195 jaqu_RS19990 dUMP acyl-CoA diaminopimeloyl-D- starch beta-ketoacyl- isomerase: fabA an uncharged trans-2- FAICAR synthetase: alanine) tetrapeptide a [protein]-S- RS18820 a (2E)-hex-2-enoyl-[acp] ACP synthase 3-hydroxyacyl- UDP FAD-dependent thymidylate CMP xanthosine tRNA a [protein] 3- a guanine in DNA decenoyl-ACP IMP jaqu_RS03860 methyl-L-cysteine RS12385 I: fabB ACP dehydratase hypoxanthine bifunctional synthase: jaqu_RS14135 phosphorylation nitrosothio- MalE enoyl-ACP isomerase: fabA nucleoside- purine-nucleoside beta-ketoacyl- FabZ: fabZ AMP phosphoribosylaminoimidazolecarboxamide CMP L-alanine oleoyl-CoA a (2E)-2- reductase enoyl-ACP diphosphate dTMP phosphorylase: deoD 3-hydroxyacyl- formyltransferase/IMP cyclohydrolase: purH (d)CMP kinase: xanthine a reduced L-alanyl-γ-D- a 1-acyl-2- a [protein]- (2S)- an N-terminal- a peptide with an [amino-group ACP synthase a 2,3,4-saturated reductase: a trans-2-enoyl- kinase: ndk xanthine enoyl-CoA a sulfurated a D-tryptophanyl- an oxidized FabI: fabI ACP gln acyl-CoA a 5,10- a uridine 34 ubiquinone-6 electron-transfer hydrogen cyanide glutamyl-L-lysyl- arachidonoyl- FAD methylsuccinyl- L-methionyl-L- an N-terminal 15-cis-phytoene II: fabF fatty acyl-[acp] [acyl-carrier protein] dTMP kinase: tmk jaqu_RS18590 gly L-threonine Trp factor 420 carrier protein]- jaqu_RS13660 phosphoribosyltransferase: gpt dehydrogenase: enoyl-CoA [sulfur carrier] acetyl-CoA [tRNA ] enoyl-ACP dehydratase UTP CDP xanthine methylenetetrahydrofolate in tRNA flavoprotein D-alanyl-D-alanine sn-glycerol CoA valyl-[protein] L-methionine Coenzyme F420 phytoene C-terminal-γ- CcmD RS17315 a (7Z)-3-oxo- [+ 2 isozymes] IMP a 2,3,4-saturated hydratase: reductase: FabZ: fabZ dTDP jaqu_RS05745 acyl-CoA acyl-CoA a 2,3,4- 3-phosphate CTP hydrogenase/ desaturase: nucleoside- phosphoribosyltransferase: gpt a [protein]- fatty acid jaqu_RS17800 (L-glutamate 5- RS15975 jaqu_RS13660 hexadec-7-enoyl-[acp] CTP synthase: S-nitrosoglutathione [+ 3 isozymes] dehydrogenase: saturated (3R)-3- FAD:protein crtI IMP L-cysteine synthetase: electron transfer rhodanese D-alanyl-D-alanine 3-oxoadipyl- D-tyrosyl- type I methionyl type I methionyl dehydrogenase, semialdehyde-2-N-acetyl- a (2E,9Z)-hexadeca- nucleoside- diphosphate jaqu_RS01820 a 2,3,4- hydroxyacyl-CoA tRNA uridine-5- FMN 3-oxoacyl-ACP enoyl-ACP jaqu_RS02850 (2E,9Z)- jaqu_RS03860 a 2,3,4-saturated flavoprotein- domain- carboxypeptidase/ phosphatidate CoA tRNA(Tyr) aminopeptidase: aminopeptidase: beta subunit C- phytoene yl)-L-glutamategamma- a hexanoyl-[acp] 2,9-dienoyl-[acp] diphosphate kinase: ndk kinase: ndk XMP S-(hydroxymethyl) [+ 3 isozymes] saturated (3S)-3- carboxymethylaminomethyl(34) transferase: reductase reductase: octadecenoyl-CoA fatty acyl CoA ubiquinone containing D-alanyl-D-alanine- cytidylyltransferase: thiolase: deacylase: map map terminal domain: desaturase: glutamyl- enoyl-ACP glutathione hydroxyacyl-CoA synthesis GTPase MnmE: mnmE jaqu_RS17510 DctP FabG: fabG jaqu_RS13660 CTP dTTP CTP oxidoreductase: protein: jaqu_RS19835 crtI phosphate RS11180 dehydrogenase/ enoyl-CoA endopeptidase: dacB jaqu_RS11210 pcaF jaqu_RS00760 beta-ketoacyl- reductase: tRNA uridine-5- jaqu_RS07995 jaqu_RS00750 a reduced 9,15,9'-tri-cis an [amino-groupreductase: a (3R,7Z)-3-hydroxy- enoyl-ACP class III alcohol hydratase: acetyl-CoA C- RS03160 ACP synthase jaqu_RS13660 carboxymethylaminomethyl(34) an N-terminal factor 420 -ζ-carotene carrier protein]-argC hexadec-7-enoyl-[acp] reductase Tetrapyrrole Biosynthesis jaqu_RS17800 L-alanyl-γ-D- a CDP-1-acyl- a [protein]-FMN- met met a peptide II: fabF enoyl-ACP dehydrogenase: coenzyme A acyltransferase: synthesis enzyme MnmG: mnmG 4-methyl-3- L-valyl-[protein] C-terminal-γ- an oxidized AMP L-threonine Trp FabI: fabI Aromatic Compound Biosynthesis jaqu_RS15645 (S)-3-hydroxy-(9Z) jaqu_RS12570 H + ubiquinol-6 thiocyanate an unsulfurated glutamyl-L- D-ala 2-arachidonoyl- D-tryptophan a tRNA beta-ketoacyl- bifunctional 3- reductase electron-transfer oxoadipyl-CoA (5-phospho- RS12750 3,8-divinyl-chlorophyllide a biosynthesis -octadecenoyl-CoA a 2,3,4-saturated a 2,3,4-saturated [sulfur carrier] lysyl-D-alanine glycerol hydroxydecanoyl- FabI: fabI bacteriochlorophyll a biosynthesis S-(hydroxysulfenamide) acetyl-CoA C- a 5-carboxymethylaminomethyluridine 34 flavoprotein L-glutamyl)- ACP synthase III (aerobic, light independent) fatty acyl CoA 3-oxoacyl-CoA ACP dehydratase/ chorismate biosynthesis I glutathione acyltransferase: a 7,8-dihydrofolate L-glutamate RS16925 I: fabB gluconeogenesis I Carbohydrate Biosynthesis 3-(4-hydroxyphenyl) in tRNA trans-2- a palmitoleoyl-[acp] UDP-N-acetyl-D- GDP-mannose biosynthesis trehalose jaqu_RS01845 biotin-carboxyl carrier pyruvate biosynthesis uroporphyrinogen-III chlorophyllide a RS15155 a 3-oxooctanoyl-[acp] decenoyl-ACP D-erythrose 2 glucosamine biosynthesis I biosynthesis V uroporphyrinogen 3-oxo-(9Z)- an N-terminal- an N-terminal- RS16395 isomerase: fabA protein assembly (S)-malate D-glucopyranose 4-phosphate a [ribosomal an N-terminal N-acetyl-muramoyl-(L- an (S)-2- a [lipoyl-carrier 3-deoxy-7- decarboxylase: octadecenoyl-CoA a sulfurated an L-phenylalanyl- NADPH NAD + a RNA-DNA hybrid phenyl acetate roseoflavin D-glucopyranose tyr protein S12] alanyl-γ-D-glutamyl-L- L-methionyl-L- L-methionyl- protein]-N 6 -[(R) 3-oxoacyl- 3-hydroxyacyl- a [biotin carboxyl- 6-phosphate a glycogen hydroxylamine arginyl-[protein] [tRNA Phe ] halocarboxylate dGDP ATP 6-phosphate glucose-6- phosphoheptulonate jaqu_RS09090 acetyl-CoA C- [sulfur carrier] L-aspartate 89 lysyl-D-alanyl-D-alanine) alanyl-[protein] glycyl-[protein] bifunctional ACP carrier protein]-L-lysine glucose-6- glycogen aspartate/ -dihydrolipoyl]- biotin ACP dehydratase malate phosphate synthase class coproporphyrinogen III acyltransferase: acetyl-CoA adenosylcobalamin- riboflavin RS15660 reductase palmitoleate debranching tyrosine/aromatic L-lysine dihydrolipoyl FabZ: fabZ biotin-- dehydrogenase: phosphate isomerase: pgi II: jaqu_RS02245 chlorophyllide a jaqu_RS01845 haloacid NAD(P)(+) dependent ribonucleoside- ribonuclease 3-deoxy- aminotransferase: leucyl/ type I methionyl type I methionyl dehydrogenase: arylesterase: kinase/FAD RS09515 FabG: fabG [acetyl-CoA- isomerase: pgi F6P protein oxygen-dependent 30S ribosomal D-alanyl-D-alanine transhydrogenase RS04890 a (2E,7Z)-hexadeca- mdh D-arabino- 3-(4- acetyl-CoA C- phenylalanyl- dehalogenase diphosphate reductase: HI: rnhA lpdA jaqu_RS08525 synthetase: carboxylase] F6P GlgX: glgX jaqu_RS02390 coproporphyrinogen protein S12 carboxypeptidase/ aminopeptidase: aminopeptidase: biotin-- a (3R)-3- 2,7-dienoyl-[acp] heptulosonate hydroxyphenyl) chlorophyllide acyltransferase: tRNA--protein type II: (Re/Si-specific): jaqu_RS19740 ribonuclease HII: jaqu_RS02005 ligase: mannose-1-phosphate a maltodextrin oxidase: hemF ammonium methylthiotransferase D-alanyl-D-alanine- map map dihydrolipoyl [acetyl-CoA- hydroxyoctanoyl-[acp] pyruvate jaqu_RS12570 jaqu_RS13670 jaqu_RS09330 jaqu_RS17130 roseoflavin enoyl-ACP oxaloacetate glutamine-- guanylyltransferase/ 7-phosphate a reductase: RimO: rimO transferase: endopeptidase: dacB vitamin B12-dependent dehydrogenase: carboxylase] jaqu_RS01400 malto- Carboxylate Degradation [+ 3 isozymes] jaqu_RS09340 5'-phosphate 3-hydroxyacyl- reductase: pyruvate fructose-6- mannose-6- 3-dehydroquinate protoporphyrinogen IX 3-devinyl-3-(1-hydroxyethyl) bchZ bchY jaqu_RS18420 ribonucleotide reductase: a [lipoyl-carrierlpdA acetate phenol ligase: RS14610 (5Z)-dodecenoate a [biotin carboxyl- oligosyltrehalose (7Z)-hexadecenoyl-CoA an N-terminal L- an N-terminal RS04895 ACP jaqu_RS13660 phosphate synthase: chlorophyllide a jaqu_RS16000 jaqu_RS12185 protein]-N 6 -[(R jaqu_RS01400 carrier protein]-N phosphoenolpyruvate phosphate isomerase: a [ribosomal N-acetyl-muramoyl-(L- DNA a nucleoside 5'- met alanyl-[protein] met glycyl-[protein] RS18865 dehydratase biosynthesis I transaminase synthase: treY jaqu_RS10920 pyruvate decarboxylation to acetyl CoA I enoyl-ACP 6 -biotinyl-L-lysine jaqu_RS09425 acyl-CoA propanoyl CoA 5'-deoxyadenosine an unsulfurated L-phenylalanyl-L- alanyl-γ-D-glutamyl- D-ala a (2R)-2- + GDP monophosphate )-lipoyl]-L-lysine carboxykinase: phosphoenolpyruvate met protein S12]-3- Phe a halide anion NADH NADP FabZ: fabZ a (3R)-3- (isomerizing) a maltooligosyl- chlorophyllide 3-deacetyl-3- queuosine pyruvate fermentation citrate degradation [sulfur carrier] arginyl-[protein] a tRNA hydroxy fatty acid reductase jaqu_RS01120 D-mannopyranose 3-dehydroquinate dehydrogenase: a [pyruvate degradation I methylsulfanyl- L-lysyl-D-alanine) biotinyl-5'- hydroxydecanoyl- synthase: ppsA : glmS trehalose a reductase: vinylbacteriochlorophyllide a biosynthesis I (de novo) to acetate IV bifunctional 3- FabI: fabI 6-phosphate protoporphyrin IX jaqu_RS05745 dehydrogenase an acetyl-holo L-aspartate 89 adenylate hydroxydecanoyl- [acp] 3-hydroxyacyl- D-glucosamine malto- bchZ bchY propanoyl-CoA RS15670 a [biotin carboxyl- phosphomannomutase/ 3-acetyl-3- preQ [+ 3 isozymes] E2 protein] N 6 pyruvate pyruvate citrate [citrate lyase acyl- RS11040 a (7Z)-hexadec-7-enoyl-[acp] ACP phosphoenolpyruvate 6-phosphate oligosyltrehalose jaqu_RS16000 0 acyl-CoA ACP dehydratase/ carrier-protein dimer]- phosphoglucomutase: magnesium chelatase devinylchlorophyllide a (2E,7Z)- -lipoyl-L-lysine carrier protein] dehydratase trehalohydrolase: pyruvate a 5,10- a 2-thiouridine 34 an N-formyl-L- sn-glycero-3- an N-terminal- a peptide with a (2E,4Z)-2,4- (3R,5S)-3- a supercoiled LptB trans-2- 6 carboxylase an N-terminal an L-phenylalanyl- 37 N -biotinyl-L-lysine phosphoglucosamine jaqu_RS12320 ATPase subunit I: bchI hexadecenoyl-CoA dihydrolipoyl DMAPP an adenosine L-methionyl-L- beta-ketoacyl- FabZ: fabZ phosphopyruvate treZ 3-deacetyl-3-(1-hydroxyethyl) dehydrogenase: methylenetetrahydrofolate in tRNA Phe methionylaminoacyl- phospho-N- a type IV prepilin an N-terminal dienoyl-CoA hydroxy-1- duplex DNA decenoyl-ACP mutase: jaqu_RS04665 α-D-mannose 3-dehydroshikimate chlorophyllide enoyl-CoA subunit beta: L-lysyl-[protein] [tRNA ] in tRNA dADP GTP ACP synthase acetyl-CoA acetyl-CoA hydratase: eno bacteriochlorophyllide a preQ dehydrogenase: jaqu_RS05145 tRNA (arachidonoyl) threonyl-[protein] L-alanine NADPH- pyrroline-5- DNA isomerase: fabA bifunctional 3- α 1-phosphate α α Mg-protoporphyrin a reductase: 1 hydratase: jaqu_RS11615 RS00195 I: fabB carboxylase carboxylase α -D-glucosamine , -trehalose shikimate lpdA (S)-methylmalonyl- ethanolamine adenosylcobalamin- diguanylate cyclase: dependent 2,4- carboxylatepyrroline-5- helicase hydroxydecanoyl- glycogen biosynthesis III (from -maltose 1-phosphate) bchZ bchY pdhA a citryl-holo tRNA uridine-5- carboxyltransferase biotin 2-phospho-D-glycerate 1-phosphate tRNA jaqu_RS17800 CoA tRNA (adenosine(37)-N6) dependent ribonucleoside- jaqu_RS07045 RecQ: RS12845 a (2E)-oct-2-enoyl-[acp] beta-ketoacyl- ACP dehydratase/ mannose-1-phosphate dehydrogenase: magnesium protoporphyrin jaqu_RS16000 dihydrolipoyl acetyl-CoA formate [citrate lyase acyl- leucyl/ peptide type I methionyl dienoyl-CoA carboxylate subunit beta: carboxylase guanosine(34) methylmalonyl- carboxymethylaminomethyl(34) diphosphate reductase: aminopeptidase ACP synthase trans-2- bifunctional UDP-N- guanylyltransferase/ jaqu_RS16285 IX methyltransferase: (S)-3-hydroxy-(7Z) dehydrogenase: phenylalanyl- deformylase: glycerophosphodiester -dimethylallyltransferase aminopeptidase: bifunctional reductase: reductase: recQ 2,3-bisphosphoglycerate- D-glucopyranose 6-phosphate α a [pyruvate phosphate carrier protein] synthesis GTPase MnmE: mnmE N: pepN RS05200 jaqu_RS09650 subunit: accC ADP- -D-glucose acetylglucosamine mannose-6- jaqu_RS15890 transglycosylase -hexadecenoyl-CoA lpdA CoA tRNA--protein MiaA: miaA jaqu_RS19740 jaqu_RS09675 jaqu_RS19010 ATP- enoyl-ACP II: fabF decenoyl-ACP CMP-3-deoxy-D- a [pyruvate pyruvate citryl-CoA lyase: jaqu_RS20065 phosphodiesterase: map diguanylate cyclase/ a [carboxyl-carrier independent diphosphorylase/ phosphate isomerase: shikimate bacteriochlorophyllide a Tgt: tgt dehydrogenase acetyltransferase: epimerase: mce tRNA uridine-5- transferase: vitamin B12-dependent a (2E)-2- Hyp RS01315 reductase isomerase: fabA manno-octulosonate magnesium-protoporphyrin dehydrogenase dehydrogenase 6 jaqu_RS10060 phosphodiesterase: dependent a (9Z)-3-oxo- 6 phosphoglycerate a 7-aminomethyl-7- E2 protein] N -S- jaqu_RS11370 jaqu_RS05765 [+ 2 isozymes] a (2E)-dec- protein dimer]-N - glucosamine-1- jaqu_RS09425 trehalose biosynthesis I 6 carboxymethylaminomethyl(34) jaqu_RS18420 6 ribonucleotide reductase: enoyl-CoA FabI: fabI biosynthesis shikimate IX 13-monomethyl ester 34 E2 protein] N - complex (R)-methylmalonyl- N -(3-methylbut- jaqu_RS05565 DNA octadec-9-enoyl-[acp] mutase: jaqu_RS09585 deazaguanosine acetyldihydrolipoyl- synthesis enzyme MnmG: mnmG an N-terminal L- a cleaved type 2-enoyl-[acp] carboxybiotinyl-L-lysine phosphate N- D-ribulose dihydrolipoyl-L-lysinedihydrolipoamide CoA 2-en-1-yl)- jaqu_RS12185 a peptide c-di-GMP ala a peptide helicase enoyl-ACP trehalose-6- GDP-α-D-mannose D-glucopyranose kinase: magnesium-protoporphyrin in tRNA 3-oxo-(7Z)- L-lysine acetyl phosphate oxaloacetate met threonyl-[protein] IV prepilin RS06405 3-oxoacyl-ACP acetyltransferase 5-phosphate a L-methionylaminoacyl- sn-glycerol 37 reductase: bifunctional 3- 3-phospho-D-glycerate UDP-α-D-glucose jaqu_RS10915 IX monomethyl ester acetyltransferase: methylmalonyl- L-phenylalanyl- formate anandamide adenosine ADP RecG: recG phosphate D-arabinose 6-phosphate tRNA preQ1(34) S- hexadecenoyl-CoA Phe RS01310 reductase GlmU: glmU geranylgeranyl jaqu_RS05140 CoA a 5-aminomethyl-2- L-lysyl-[protein] a tRNA tRNA 3-phosphate in tRNA a single DctP jaqu_RS13660 hydroxydecanoyl- synthase: 5-phosphate shikimate 3- (oxidative) cyclase: acsF adenosylmethionine acetate kinase: FabG: fabG phosphoglycerate α acetyl-CoA C- a 7,8-dihydrofolate 34 stranded DNA ACP dehydratase/ N-acetyl- -D- 1 bacteriochlorophyllide a mutase: scpA thiouridine in tRNA kinase: jaqu_RS03520 isomerase: trehalose-6- phosphate 13 -hydroxy-magnesium- ribosyltransferase- acyltransferase: jaqu_RS11365 an octanoyl-[acp] a (3R,9Z)-3-hydroxy- trans-2- fatty acid biosynthesis glucosamine aldehydo-D-jaqu_RS13415 phosphate protoporphyrin IX 13-monomethyl ester isomerase QueA: queA jaqu_RS01845 succinyl-CoA octadec-9-enoyl-[acp] initiation (type II) jaqu_RS05175 1-phosphate 3-phosphoshikimate 1- superpathway of acetate decenoyl-ACP phosphomannomutase/ 34 acetate arabinose 5- dTDP-β-L-rhamnose synthase: carboxyvinyltransferase: magnesium-protoporphyrin an epoxyqueuosine UDP-N-acetyl-α-D-muramoyl- 32 an [L-cysteine a peptidoglycan D-sedoheptulose RS04820 beta-ketoacyl- acetyl-CoA C- utilization and formation a cytosine + a (2E,4E)-2,4- a supercoiled isomerase: fabA phosphoglucomutase: bifunctional UDP-N- acetyl-CoA glycolate and di-trans,octa-cis- pyruvate canavaninosuccinate ammonium NAD H O dihydroxyacetone GGPP DctP bifunctional 3- 13-DPG phosphate biosynthesis jaqu_RS03520 aroA IX monomethyl ester phyta-2,10,14-trienyl in tRNA L-alanyl-γ-D-glutamyl-L- desulfurase]-S- dimer (generic) 2 chlorophyllide a 1,7-bisphosphate dienoyl-CoA duplex DNA ACP synthase acetyl-CoA acyltransferase: glyoxylate undecaprenyl phosphate in tRNA ATP IMP RS06140 hydroxydecanoyl- a (3Z)-dec- jaqu_RS12320 α,α-trehalose 6-phosphate acetylglucosamine 5-enolpyruvoyl- (oxidative) cyclase: acsF lysyl-D-alanyl-D-alanine sulfanyl-L-cysteine a tRNA precursor dihydroxyacetone NADPH- ATP- II: fabF acetyl-CoA α-D-glucopyranose bacteriochlorophyllide a tRNA jaqu_RS12570 acetate diphosphorylase/ α,α-trehalose 1 degradation II CTP kinase: dhaK 5'/3'- ACP dehydratase/ 3-enoyl-[acp] carboxylase type I shikimate 3- 13 -oxo-magnesium-protoporphyrin epoxyqueuosine(34) acetate--CoA dependent 2,4- dependent beta-ketoacyl- trehalose- glucosamine-1- 1-phosphate pyruvate, endolytic argininosuccinate nitrite fructose nucleotidase trans-2- glyceraldehyde- 6-phosphate phosphate IX 13-monomethyl ester (5Z)-tetradecenoyl-CoA glycolate ligase: acs phospho-N- tRNA 2- jaqu_RS16105 chlorophyll dienoyl-CoA helicase ACP synthase beta- carboxyltransferase phosphatase: otsB D-arabinofuranose glucose-1-phosphate reductase QueG: queG acetate kinase: phosphate transglycosylase lyase: reductase bisphosphate decenoyl-ACP triose- 3-phosphate phosphate N- chorismate thiocytidine(32) CCA tRNA dihydroxyacetone synthase reductase: HrpB: hrpB SurE: surE subunit beta: thymidylyltransferase trehalose- magnesium-protoporphyrin a queuosine 34 D-gluconate glycolate oxidase acetylmuramoyl- RS12525 I: fabB ketoacyl- acetyltransferase 5-phosphate phyta-2,14-dienyl acyl-CoA jaqu_RS11365 dikinase: MltG: mltG jaqu_RS21350 small subunit aldolase: RS20225 isomerase: fabA jaqu_RS09650 phosphate dehydrogenase: α α RfbA: rfbA phosphatase: synthase: IX monomethyl ester degradation subunit GlcF: glcF pentapeptide- synthetase nucleotidyltransferase: kinase ChlG: chlG jaqu_RS09675 [+ 2 isozymes] pyrimidine 5'- ACP , -trehalose GlmU: glmU 3-deoxy-8- α in tRNA dehydrogenase: jaqu_RS04645 [+ 8 isozymes] NirD: nirD jaqu_RS05160 isomerase: gap dTDP- -D-glucose otsB aroC bacteriochlorophyllide a transferase: TtcA: ttcA jaqu_RS05980 argininosuccinate subunit DhaK: a (2E)-2- a single nucleotidase: RS15665 a 3-oxodecanoyl-[acp] 3-hydroxyacyl- synthase malonyl-CoA phosphooctulonate (oxidative) cyclase: acsF jaqu_RS01820 glyoxylate acetyl phosphate acetyl-CoA jaqu_RS04910 maltose alpha-D- UDP-N-acetyl- D-gluconate jaqu_RS06565 lyase: argH jaqu_RS16570 enoyl-CoA stranded DNA jaqu_RS02400 ACP dehydratase I: fabB D-glyceraldehyde α synthase: kdsA dTDP-glucose 4,6- α α chorismate GlcNAc-1,6- geranylgeranyl ACP S- DHAP glucosyltransferase: -D-glucosamine , -trehalose 3,8-divinyl protochlorophyllide a [+ 3 isozymes] 32 an [L-cysteine D-erythrose FabZ: fabZ 3-phosphate dehydratase: rfbB gluconokinase: malate synthase phosphoenol + a 2-thiocytosine a tRNA a lipid II inosine 3-oxoacyl- beta- diphosphate H desulfurase]- anhydro-MurNAc- nitrite DHAP chlorophyll a DHAP RS09495 malonyltransferase: α treS (2E,5Z)- jaqu_RS15455 G: jaqu_RS05460 AMP pyruvate in tRNA containing a 4-phosphate ACP a (2E,9Z)-octadeca- ketoacyl- -D-glucopyranose KDO-8P dTDP-4-dehydro-6- ferredoxin:protochlorophyllide lipoprotein posttranslational modification D-gluconate undecaprenyl-diphospho-N- UMP pentapeptide L-canavanine fumarate fabD ADP-α-D-glucose α bacteriochlorophyll a tetradecenoyl-CoA phosphate L-cysteine RS20145 reductase 1-phosphate α-maltose deoxy- -D-glucopyranose reductase (ATP-dependent): acetylmuramoyl-L-alanyl-γ-D- 3' CCA end 2,9-dienoyl-[acp] ACP 6-phosphate (S)-malate acetyltransferase: FabG: fabG dTDP-4- jaqu_RS15905 jaqu_RS15910 a [prolipoprotein]- glutamyl-L-lysyl- D-alanyl-D-alanine RS05015 enoyl-ACP synthase a malonyl-[acp] enoyl-CoA jaqu_RS11370 fructose dehydrorhamnose L-cysteine a (3R)-3- II: fabF α trehalose hydratase: RS15295 reductase: bisphosphate UDP- -D-glucose 3,5-epimerase: rfbC chlorophyllide a a (5Z)-3- ketoacyl-ACP 2 prolipoprotein UDP-N-acetyl-α-D- a DNA containing 4-methyl-5-(2- D-sedoheptulose 6-O-trans- hydroxydecanoyl-[acp] jaqu_RS13660 biosynthesis α biosynthesis IV (3E,5Z)-tetradeca- jaqu_RS17800 a lipid II a [DNA]-3'- a 5'-phospho- aldolase: -Kdo dTDP-4-dehydro- diacylglyceryl di-trans,octa-cis- γ a peptidoglycan an acyl-[acyl- an apurinic/ D-ala 2-oxoglutarate phosphooxyethyl) cobalt-precorrin-7 GGPP methoxy-mycolyl- ethanol oxododec- synthase III: UDP-α-D- muramoyl-L-alanyl- -D- HMP-PP hydroxyl [DNA] chlorophyllide b 1-phosphate asn 3-hydroxyacyl- enoyl-ACP jaqu_RS05160 α D-glucopyranose β-L-rhamnose α 3,5-dienoyl-CoA undecaprenyl phosphate carrier protein] RS16665 5-enoyl-[acp] jaqu_RS02430 galactose -maltose 1-phosphate 3-deoxy-manno- -maltose transferase: (S)-3-hydroxy-(5Z) glutamyl-L-lysyl-D-alanine apyrimidinic site thiazole bifunctional cobalt- trehalose 6- catalase/ ACP reductase acyl-CoA amino acid 3-oxoacyl- 6-phosphatephosphomannomutase/ octulosonate dTDP-4- maltose alpha-D- jaqu_RS08075 precorrin-7 (C(5))- phosphate peroxidase FabI: fabI biosynthesis -tetradecenoyl-CoA monofunctional ATP-dependent fructose trehalose- RS18675 dehydratase ACP an acetoacetyl-[acp] alpha-1,4-glucan-- dehydrorhamnose glucosyltransferase: a [prolipoprotein]- thioesterase: methyltransferase/ chlorophyll racemase: HPI: katG DctP UDP-α-D-glucose phosphoglucomutase: cytidylyltransferase: phospho-N- biosynthetic phosphate endonuclease D-amino-acid thiamine phosphatase: FabZ: fabZ maltose-1-phosphate treS S-1,2-diacyl-sn- jaqu_RS04425 DNA ligase: bisphosphate jaqu_RS17365 reductase β jaqu_RS12320 jaqu_RS07300 reductase: rfbD acetylmuramoyl- acyltransferase transaminase: cobalt-precorrin- synthase catalase/ an oleoyl-[acp] -D-fructose 1,6- UDP-glucose α-D-glucopyranose α,α-trehalose peptidoglycan III: phosphate jaqu_RS11300 aldolase: trehalose-otsB bifunctional 3- FabG: fabG maltosyltransferase: glyceryl-L-cysteine acyl-CoA PlsX: plsX jaqu_RS14715 6B (C(15))- ChlG: chlG peroxidase bisphosphate 4-epimerase 1-phosphate dTDP-β-L-rhamnose pentapeptide- transglycosylase: jaqu_RS01570 synthase: jaqu_RS05160 D-asparagine hydroxydecanoyl- a (3R,5Z)-3- jaqu_RS03940 CMP-Kdo thioesterase: 3-oxo-(5Z)- Nucleoside and Nucleotide Degradation methyltransferase: trans-methoxy- transferase: mtgA [+ 2 isozymes] jaqu_RS11325 HPI: katG RS17305 ACP dehydratase/ hydroxydodec- class II fructose- GalE: galE UTP--glucose- signal jaqu_RS19720 mono-mycolate α α tetradecenoyl-CoA jaqu_RS06565 jaqu_RS14730 geranylgeranyl RS12430 5-enoyl-[acp] bisphosphatase: UDP- -D-galactose a (1->4)- -D-glucan peptidase II: [DNA] acetaldehyde RS04940 trans-2- 1-phosphate (3E,5Z)- acetyl-CoA C- purine nucleotides degradation II (aerobic) pyruvate glpX jaqu_RS13490 superpathway of pyrimidine di-trans,octa-cis acyl-carrier protein an acyl phosphate D-glt cobalt-precorrin-8 chlorophyll b DHAP D-erythrose decenoyl-ACP bifunctional 3- 1,4-alpha-glucan uridylyltransferase: acyltransferase: thymine degradation a peptidoglycan a 3'-terminal a 5'-phospho- thiamine PRPP biosynthesis tetradecadienoate deoxyribonucleosides degradation undecaprenyl-diphospho-N UMP -undecaprenyl isomerase: fabA hydroxydecanoyl- branching jaqu_RS03530 jaqu_RS12570 unsaturated sugar [DNA] phosphate octanoyl-[acyl-carrier acyl-CoA hydrolysis F6P an (S-diacyl-sn- -acetylmuramoyl-L-alanyl-γ- diphosphate ACP dehydratase/ protein GlgB: glgB a lipoprotein 2'-deoxycytidine thymine protein] biosynthesis UTP--glucose- D-ribose 5- glyceryl)-L-cysteinyl- acetyl-CoA C- AMP D-glutamyl-L-lysyl- D-alanine RS01900 trans-2- glucose-6- signal peptide RS03890 a (2E)-dec-2-enoyl-[acp] (mitochondria, yeast) a 2,3,4-saturated 1,4-alpha-glucan 1-phosphate phosphate [apolipoprotein] acyltransferase: decenoyl-ACP fatty acyl CoA phosphate branching uridylyltransferase ribose-phosphate nucleoside RS04880 acyl-CoA apolipoprotein N- jaqu_RS01845 5'/3'-nucleotidase 5,6-dihydrothymine an N 6 -L- a [protein] N- enoyl-ACP an acetoacetyl-[acp] isomerase: fabA isomerase: pgi pyrophosphokinase: Nα,Nε-diacetyl-lysyl- 4-nitrophenyl protein GlgB: glgB GalU: galU SurE: surE deaminase: a sulfurated 37 MoO - 2-methylbutanoate carbamoyl MeOH thioesterase: acyltransferase: lnt (3Z)-dodec- threonylcarbamoyladenine 2 L-ornithine terminal-formyl- asp O-ureido-L- 3'-AMP met an L-amino acid reductase 3-oxoacyl-ACP 3-hydroxyacyl- jaqu_RS01550 jaqu_RS03015 dihydropyrimidinase: GTP D-alanyl-D-alanine palmitate gln D-glucopyranose 3-enoyl-CoA pyrimidine 5'- thymidine [sulfur carrier] molybdopterin phosphate homoserine catalase/ FabI: fabI reductase jaqu_RS04425 a GlgE-glycogen UDP-α-D-glucose PRPP an N-acyl-(S-diacyl- hydA in tRNA molybdopterin L-methionine bifunctional 2',3'- LptA ACP 6-phosphate a peptide nucleotidase: cytidine cofactor bifunctional amino acid amino acid acyl-CoA sn-glyceryl)-L- thymidine cyclic-nucleotide 2'- peroxidase enoyl-ACP FabG: fabG dehydratase deaminase: 3-(carbamoylamino)- acetate- D-alanyl-D-alanine glutamate N- racemase: racemase: RS09835 a (3R)-3- thioesterase: cysteinyl-[lipoprotein] jaqu_RS02400 IMP arylesterase: phosphodiesterase/ HPI: katG reductase: FabZ: fabZ phosphorylase: 2-methylpropanoate tRNA (N(6)-L- -CoA carboxypeptidase/ ornithine peptide argininosuccinate acetyltransferase/ hydroxybutanoyl-[acp] GMP jaqu_RS00315 molybdenum cofactor jaqu_RS08525 jaqu_RS17365 jaqu_RS17365 RS06315 jaqu_RS13660 jaqu_RS19720 jaqu_RS00320 threonylcarbamoyladenosine(37) carbamoyltransferase: deformylase: synthase: 3'-nucleotidase: amino-acid catalase/ a (2E,5Z)-dodeca- a 2,3,4-saturated (2E)-dodec- adenosine IMP ligase: acs D-alanyl-D-alanine- 3-hydroxyacyl- -C(2))- methylthiotransferase guanylyltransferase argF jaqu_RS20065 jaqu_RS06025 jaqu_RS00965 acetyltransferase a D-amino acid D-glutamine peroxidase a decanoyl-[acyl- 3,5-dienoyl-[acp] fatty acid 2-enoyl-CoA 5'/3'-nucleotidase dehydrogenase: 2'-deoxyuridine thymine endopeptidase: dacB RS16080 ACP dehydratase MtaB: mtaB MobA: mobA ArgJ: argJ HPI: katG carrier protein] enoyl-CoA guaB (2S)-2- [+ 2 isozymes] adenosine FabZ: fabZ enoyl-ACP periplasmic disulfide bond formation adenosine SurE: surE 4-nitrophenol palmitate N-acetyl-L- formaldehyde (R)-3-amino-2- methylbutanoyl- diphosphate reductase: hydratase: deaminase: pyrimidine 5'- bis(guanylyl AMP Nα,Nε-diacetyl- canavaninosuccinate RS16540 beta-ketoacyl- bifunctional 3- methylpropanoate a 2-methylsulfanyl-N 6 -L- L-citrulline methionine a [DsbB protein] a [DsbA protein] two reduced jaqu_RS17800 jaqu_RS00330 nucleotidase: XMP CoA D-ala an N-terminal L- ACP synthase jaqu_RS13660 37 5'-deoxyadenosine an unsulfurated molybdopterin) lysyl-D-alanine hydroxydecanoyl- an electron- carrying a threonylcarbamoyladenine met formate MgtE Cofactor, Carrier, and Vitamin Biosynthesis with reduced L- cysteine residues (S)-3- jaqu_RS02400 cofactor methionyl-[protein] RS07660 II: fabF ACP dehydratase/ enoyl-ACP cob(II)yrinate a,c-diamide ubiquinol-8 biosynthesis transfer quinone in tRNA [sulfur carrier] [2Fe-2S] iron-sulfur superpathway of tetrahydrofolate biosynthesis superpathway of heme b flavin biosynthesis I (bacteria and plants) superpathway of heme b thiamine diphosphate cysteine residues disulfide bond in a protein hydroxydodecanoyl-CoA inosine 5'/3'-nucleotidase beta-ketoacyl- trans-2- reductase biosynthesis II (late (early decarboxylation) cluster biosynthesis biosynthesis from glutamate biosynthesis from glycine biosynthesis II (Bacillus) SurE: surE ACP synthase FabI: fabI cobalt incorporation) guanosine decenoyl-ACP all-trans- 2-deoxy-α-D- 6 uracil N -(3-methylbut- a peptide with 34 I: fabB 2-(2-carboxy-4- purine-nucleoside pyrimidine 5'- 3-phenyl-2- a [DNA]-3'- 4-nitrophenyl an adenosine YajC isomerase: fabA a (5Z)-dodec- uroporphyrinogen-III octaprenyl GTP GTP gly ribose 1-phosphate S-methyl-5'- γ-L-glutamyl-(S)- 3'-GMP RNA L(or D)-O- L-cysteine desulfurase 4-hydroxybenzoate glu methylthiazol-5- phosphorylase: purine-nucleoside nucleotidase: a sulfurated [sulfur carrier] 2-en-1-yl)- oxopropanoate tyr DL-allothreonine hydroxyl an N-terminal a PII protein gly butanoate L-ornithine in [tRNA Arg2 ] 5-enoyl-[acp] uroporphyrinogen-III diphosphate HMP-PP thioadenosine 37 phosphoserine glutamate-- 5-aminolevulinate yl)ethyl phosphate 3-oxododecanoyl-CoA deoD phosphorylase: jaqu_RS02400 phosphopentomutase: adenosine in tRNA Xaa-L-proline UTP 2-aminobutanoate bifunctional 2',3'- Flp pilus RS04160 a 3-oxododecanoyl-[acp] a (2E)-but-2-enoyl-[acp] C-methyltransferase: degradation I phosphoserine amino acid cysteine GTP tRNA ligase: synthase: hemA deoD jaqu_RS00325 cyclic-nucleotide 2'- assembly cobA 4-hydroxybenzoate GTP cyclohydrolase S-methyl-5'- exodeoxyribonuclease phosphatase racemase: 3-oxoacyl- desulfurase: cyclohydrolase jaqu_RS11795 5-aminolevulinate thiamine acetyl-CoA C- hypoxanthine xanthosine aspartate/ serine leucyl glutathione arylesterase: phosphodiesterase/ ribonuclease complex acyl-CoA/acyl-ACP octaprenyltransferase: II: ribA 2-deoxy-D-ribose thioadenosine tRNA (N6-isopentenyl III: jaqu_RS07440 [protein-PII] SerB: serB jaqu_RS17365 uroporphyrinogen-III I FolE2: synthase: hemA phosphate acyltransferase: tyrosine/aromatic jaqu_RS08525 3'-nucleotidase: PH: rph ATPase ACP dehydrogenase: jaqu_RS01700 jaqu_RS05650 glutamate-- guanine 5-phosphate adenosine(37)-C2)- hydroxymethyltransferase: aminopeptidase: uridylyltransferase: synthase: C-methyltransferase: 2,5-diamino-6-(5-phospho-D- 5-aminolevulinate jaqu_RS01845 aminotransferase: exodeoxyribonuclease RS01525 reductase jaqu_RS01135 cysteine jaqu_RS11960 tRNA ligase: synthase: methylthiotransferase jaqu_RS11515 jaqu_RS02150 jaqu_RS18095 gshB jaqu_RS00965 serine D-ornithine component cobA 7,8- ribosylamino)pyrimidin-4(3H)-one jaqu_RS02390 III: xth FabG: fabG stearate biosynthesis desulfurase: jaqu_RS06310 jaqu_RS11325 acetyl-CoA C- xanthine purine-nucleoside MTR TadA: tadA [+ 2 isozymes] 4-hydroxy-3- an L-glutamyl- deoxyribose- MiaB: miaB 34 FliF precorrin-1 dihydroneopterin bifunctional porphobilinogen acyltransferase: guanine guanosine a nucleoside an inosine II (bacteria and plants) jaqu_RS01735 Glu dehydrogenase: phosphorylase: phosphate a peptide with butanoate 4-nitrophenol RNA a (3R)-3- octaprenylbenzoate 3'-triphosphate [tRNA ] synthase: hemB DsbA family 3-(4- a 2'- diphosphate in [tRNA Arg2 ] diaminohydroxyphosphoribosylaminopyrimidine jaqu_RS12570 deaminase: guaD S-methyl-5- 6 acetaldehyde a [DNA]-3'- a proteinogenic a uridylylated ophthalmate hydroxydodecanoyl-[acp] a butanoyl-[acp] uroporphyrinogen-III thiamine xdhB xdhA deoD aldolase: N -(3-methylbut-2-en- gly an N-terminal an S-sulfanyl-[L- deaminase/5-amino-6-(5-phosphoribosylamino) oxidoreductase: thioribose hydroxyphenyl) phe deoxyribonucleoside amino acid PII protein phosphate deoC 5'-deoxyadenosine an unsulfurated hydroxyl L-proline a palmitoyl-[acp] C-methyltransferase: cysteine desulfurase] porphobilinogen jaqu_RS10840 decanoyl-CoA 1-yl)-2-(methylsulfanyl) met pyruvate 5'-monophosphate 3-hydroxyacyl- beta-ketoacyl- uracil reductase RibD: ribD a [DsbB protein] a [DsbA protein] kinase: 37 [sulfur carrier] beta-ketoacyl- cobA an electron- an intra- xanthine adenosine in tRNA RS12915 ACP ACP synthase 7,8- superpathway of adenosylcobalamin salvage from cobinamide I 5-amino-6-(5-phospho- carrying a with reduced L- mtnK ACP synthase uroporphyrinogen-III (S)-4-amino-5- hydroxymethylbilane transfer quinol protein disulfide acyl-CoA D-glyceraldehyde dehydratase II: fabF 2-octaprenylphenol disulfide bond cysteine residues acetaldehyde RS11415 II: fabF dihydroneopterin D-ribosylamino)uracil synthase: hemC dehydrogenase: xanthine 3-phosphate FabZ: fabZ C-methyltransferase: oxopentanoate 5-MTR-1-P a peptidoglycan dimer (meso a peptidoglycan an N-terminal- beta-ketoacyl- 3'-phosphate cob(II)inamide a nascent peptidoglycan 6 6 beta-ketoacyl- cobA an S-sulfanyl-[cysteine 2-polyprenylphenol bifunctional thiamine jaqu_RS05745 dehydrogenase N ,N -dimethyl- adenosylcobinamide L-methionyl-L- a uracil in DNA (3S)-citryl-CoA Ins(1)P a ribonucleoside bifunctional 3- ACP synthase preuroporphyrinogen (meso-DAP containing) -diaminopimelate containing) dimer (S. aureus) repressor LexA a protein a protein ACP synthase desulfurase]-[disordered- 6-hydroxylase: ubiB diaminohydroxyphosphoribosylaminopyrimidine diphosphate [+ 3 isozymes] accessory protein L-arginine bifunctional 5'-monophosphate cob(I)yrinic acid cysteinyl-[protein] inositol pyrimidine 5'- ATP- hydroxydecanoyl- I: fabB I: fabB precorrin-2 form scaffold deaminase/5-amino-6-(5-phosphoribosylamino) XdhC: xdhC transcriptional 3-(all-trans a,c-diamide uroporphyrinogen- 6 37 adenosylcobinamide RS08470 ACP dehydratase/ a 3-oxooctadecanoyl- protein] complex D-ribulose 5-phosphate uracil reductase RibD: ribD NADH repair (prokaryotes) N -L-threonylcarbamoyladenosine (2E)-dec-2-enoyl-CoA endolytic D-alanyl-D-alanine D-alanyl-D-alanine uracil-DNA monophosphatase: nucleotidase: endopeptidase dependent -octaprenyl) D-erythro-7,8- 5-aminolevulinate III synthase: [+ 2 isozymes] acetyl-CoA kinase/ citryl-CoA lyase: repressor trans-2- a 3-oxohexanoyl-[acp] [acp] chorismate adenosyltransferase: -modified tRNA biosynthesis transglycosylase carboxypeptidase/ dimethylarginine carboxypeptidase/ type I methionyl glycosylase: jaqu_RS09280 jaqu_RS02400 La: lon protease RS03895 benzene-1,2-diol dihydroneopterin 3,4-dihydroxy- 5-amino-6-(5-phospho- jaqu_RS14005 enoyl-CoA adenosylcobinamide- jaqu_RS05765 LexA: lexA decenoyl-ACP jaqu_RS01065 urate MltG: mltG D-alanyl-D-alanine- dimethylaminohydrolase: D-alanyl-D-alanine- aminopeptidase: jaqu_RS18110 subunit 3-oxoacyl- bifunctional 2- porphobilinogen 2-butanone- D-ribitylamino)uracil NADH phosphate inositol 5'/3'- cleaved 3-oxoacyl-ACP dihydroneopterin aminodeoxychorismate/ [corrinoid hydratase: endopeptidase: dacB jaqu_RS02035 endopeptidase: dacB map HslV: hslV isomerase: fabA ACP uroporphyrinogen-III thr [+ 8 isozymes] monophosphatase: nucleotidase a peptide reductase precorrin-3A a [cysteine desulfurase]- polyprenyl-6- aldolase: anthranilate synthase: hemB adenosyltranferase]- 4-phosphate jaqu_RS17800 guanylyltransferase: repressor LexA reductase NAD de novo biosynthesis threonylcarbamoyl- jaqu_RS15560 SurE: surE a peptide a (2E)-dodec- FabG: fabG S-sulfanyl-[disordered- hydroxyphenol jaqu_RS04655 synthase component cob(II)inamide synthase: ribB (S)-3- jaqu_RS18200 an apyrimidinic uracil acetyl-CoA oxaloacetate FabG: fabG porphobilinogen II (from tryptophan) uroporphyrinogen AMP synthase: superpathway of purine deoxyribonucleosides degradation a mature peptidoglycan a nascent peptidoglycan a peptidoglycan with a peptidoglycan an N-terminal L- myo-inositol a ribonucleoside RS01455 2-enoyl-[acp] form scaffold methylase/3- 6-(hydroxymethyl) II: jaqu_RS06345 hydroxydecanoyl-CoA dimethylamine adenosyl-cobinamide site in DNA a (3R)-3- a (3R)-3- 1-deoxy-L-glycero- decarboxylase: jaqu_RS05590 γ D,D cross-links (meso- D-ala L-citrulline with D,D cross- D-ala met protein] complex demethylubiquinol 3- ARP (L-threonylcarbamoyl) with (L-alanyl- -D-glutamyl- (meso-DAP containing) phosphate cysteinyl-[protein] RS09840 enoyl-ACP hydroxyhexanoyl-[acp] hydroxyoctadecanoyl- -7,8-dihydropterin 4-amino-4- tetrulose 4-phosphate jaqu_RS09090 diaminopimelate containing) cysteine O-methyltransferase hydroxymethylbilane trp (R)-NADHX adenylate meso-2,6-diaminopimeloyl- with GlcNAc terminus link (S. aureus) reductase [acp] 2-amino-4-hydroxy-6- deoxychorismate [corrinoid adenosylcobinamide-GDP 3-hydroxyacyl- precorrin-3B desulfurase: UbiG: ubiG synthase: hemC bifunctional 2'-deoxyguanosine D-alanine) tetrapeptide FabI: fabI 3-hydroxyacyl- hydroxymethyldihydropteridine adenosyltranferase]- 6,7-dimethyl-8- coproporphyrinogen III salvage from cobinamide II tRNA (adenosine(37)-N6)- ACP dehydratase jaqu_RS01700 2-methoxy- ADP-dependent ACP diphosphokinase: folK preuroporphyrinogen cob(I)inamide threonylcarbamoyltransferase 3-oxodecanoyl-CoA 2'-deoxyadenosine enoyl-ACP FabZ: fabZ 6-(all-trans- ribityllumazine N-Formyl-L- oxygen-dependent cysteine NAD(P)H-hydrate 34 a thiocarboxylated an sn-glycero-3- magnesium- RS15280 dehydratase (7,8-dihydropterin- cob(I)yrinic acid synthase: cob(II)inamide complex ATPase subunit UTP and CTP dephosphorylation I a [2-oxoglutarate- a uridine a double long chain reductase: desulfurase: octaprenyl)phenol kynurenine coproporphyrinogen dehydratase/ a sulfurated 3-methylbutanoate phospho-N-(acyl) coenzyme A a reduced c- nitrite raffinose Ins(2)P GGPP 5-MTR-1-P bifunctional 3- 6-yl)methyl uroporphyrinogen- type 1 TsaE: tsaE acetyl-CoA C- purine-nucleoside SAM dehydrogenase in tRNA [SAMP] C- VibB protoporphyrin IX stranded DNA RS09110 jaqu_RS13660 FabZ: fabZ 4-aminobenzoate a,c-diamide jaqu_RS01300 oxidase: hemF [sulfur carrier] type cytochrome polyphosphate hydroxydecanoyl- jaqu_RS01735 III synthase: cob(I)yrinic acid NAD(P)H-hydrate acyltransferase: 6 terminal glycine ethanolamine 13-monomethyl ester DNA polyphosphate S-methyl-5- precorrin-4 an S-sulfanyl-[cysteine diphosphate adenosyltransferase: [+ 2 isozymes] adenosine phosphorylase: UTP E2 protein] N - magnesium- inositol geranylgeranyl ACP dehydratase/ bifunctional 3- jaqu_RS14005 a,c-diamide epimerase: an N 6 -L- topoisomerase a dodecanoyl-[acp] desulfurase]-S- jaqu_RS01065 protoporphyrinogen IX jaqu_RS01845 deaminase: deoD octanoyl-L-lysine acetate- alpha- protoporphyrin monophosphatase: kinase 2: ppk2 diphosphate thioribose-1- trans-2- hydroxydecanoyl- 6,7-dimethyl-8-(1-D-ribityl)lumazine adenosyltransferase: jaqu_RS05510 threonylcarbamoyladenine 37 purine-nucleoside tRNA 2- holo-ACP (ATP- sulfanyl-[disordered- 2-methoxy-6-all dihydropteroate (S)-NADHX acetyl-CoA C- jaqu_RS00330 CTP synthase: -CoA glycerophosphodiester galactosidase: IX monomethyl jaqu_RS09280 polyphosphate reductase: phosphate decenoyl-ACP ACP dehydratase/ uroporphyrinogen-III jaqu_RS01065 in tRNA phosphorylase: lipoyl thiouridine(34) synthase: hydrolyzing) form scaffold trans-octaprenyl- synthase: folP adenosylcobinamide L-kynurenine acyltransferase: jaqu_RS02850 ligase: acs phosphodiesterase: jaqu_RS18680 ester (oxidative) inositol kinase 2: ppk2 jaqu_RS15940 isomerase: RS03765 isomerase: fabA trans-2- riboflavin synthase: [corrinoid purine-nucleoside deoD synthase: synthase jaqu_RS08625 subunit B: gyrB long chain phytyl mtnA beta-ketoacyl- protein] complex 1,4-benzoquinol uroporphyrinogen bifunctional jaqu_RS12570 jaqu_RS10060 cyclase: acsF monophosphatase: S-methyl-5- decenoyl-ACP bifunctional jaqu_RS01265 adenosyltranferase]- phosphorylase: UDP lipA polyphosphate diphosphate ModB ACP synthase precorrin-5 bifunctional 7,8- decarboxylase: ADP-dependent CTP MnmA: mnmA α 3,8-divinyl [+ 2 isozymes] isomerase: fabA 2'-deoxyinosine -D- jaqu_RS15560 a negatively thio-D-ribulose II: fabF a (2E)-hex-2-enoyl-[acp] demethylmenaquinone dihydropteroate jaqu_RS09090 adenosylcobinamide protoporphyrin IX cob(II)inamide NAD(P)H-hydrate octanoyl-CoA deoD 3-methylbutanoyl- sucrose protochlorophyllide a riboflavin a [2-oxoglutarate diphosphate an N- 3',5'-ADP a holo-[VibB aryl- an oxidized c- galactopyranose myo-inositol 1-phosphate laurate kinase/ N-end rule pathway I (prokaryotic) CoA 34 sn-glycerol nitric oxide supercoiled DNA beta-ketoacyl- a (2E)-octadec- methyltransferase/2- bifunctional dehydratase/ 2-deoxy-α-D- 5'-deoxyadenosine dehydrogenase an unsulfurated AMP a [SAMP] C- a 2-thiouridine carrier protein] acyl-CoA/acyl-ACP a [cysteine adenosylcobinamide- 3-hydroxy- acyl-CoA met 3-phosphate acylethanolamine type cytochrome 2-enoyl-[acp] methoxy-6-polyprenyl- coproporphyrinogen III ferrochelatase: 6 [sulfur carrier] terminal glycine in tRNA ACP synthase acyl-CoA folylpolyglutamate bifunctional NAD(P)H-hydrate leucyl/ dehydrogenase: ribose 1-phosphate UMP E2 protein] N dehydrogenase: desulfurase]-(S- phosphate L-kynurenine jaqu_RS15590 CDP RS06510 I: fabB 1,4-benzoquinol synthase/ riboflavin kinase/ [corrinoid epimerase: phenylalanyl- -lipoyl-L-lysine synthetase: jaqu_RS01135 enoyl-ACP sulfanyl) -[disordered- oxygen-dependent guanylyltransferase: jaqu_RS05745 phosphopentomutase: 5'/3'- precorrin-6A 2 methylase UbiE: ubiE adenosyltranferase]- jaqu_RS05510 RS11895 RS12950 jaqu_RS03860 reductase dihydrofolate FAD synthetase: tRNA--protein RS03730 [+ 2 isozymes] form scaffold 6-methoxy-3- coproporphyrinogen jaqu_RS18200 kynureninase: protoheme [+ 3 isozymes] 5'-deoxyadenosine jaqu_RS00325 nucleotidase FabI: fabI synthase: jaqu_RS02005 cob(I)inamide transferase: a 3-oxotetradecanoyl- protein] complex oxidase: hemF adenosyl- kynU NADH TCA cycle degradation I SurE: surE a 5-methylaminomethyl- an N-terminal 34 3 a ribonucleoside a 3,5,7,9,11,13,15- 6-O-cis-methoxy- (3R)-3- an unstable lauroyl-CoA methyl-2-all- jaqu_RS09645 cob(I)yrinic acid a [protein] (2E)-oct-2-enoyl-CoA 2-deoxy-D-ribose an L-arginyl- a [protein]-S- a uridine an N -methyladenine (2E,6E)-farnesyl [acp] a hexanoyl-[acp] enoyl-ACP jaqu_RS18420 CMP geranyl 2-thiouridine 34 a peptide with a D-glycerate pyrazinamide mycolyl-trehalose hydroxypentanoyl- RecA filament- trans-octaprenyl- cobinamide FMN an N-terminal 5-phosphate pyrimidine 5'- selenophosphate 3-sulfo-L- Arg sulfanyl-L-cysteine in tRNA in DNA protoheme 2',3'-cyclic hepta-oxo- 7,8-dihydrofolate protoporphyrinogen IX 3-hydroxyanthranilate a,c-diamide N-terminal L- diphosphate [tRNA ] diphosphate leader sequence heme b CcmA heme b reductase: 1,4-benzoquinol phosphate arginyl-[protein] 5'-deoxyadenosine nucleotidase: in tRNA alanyl-[protein] phosphate hexadecanoyl-[PKS-acp]aldo/keto D-glycerate bifunctional 6-phosphate CoA DNA complex 3-oxoacyl- adenosyltransferase: TCA cycle I (prokaryotic) leucyl-L-arginine enoyl-CoA 5'/3'- bifunctional 2',3'- trehalose- acetoacetyl- DNA beta-ketoacyl- jaqu_RS13660 precorrin-6B monoglutamate bifunctional dehydrogenase: nicotinamidase/ ACP bifunctional jaqu_RS01065 hydratase: deoxyribose- nucleotidase jaqu_RS02400 cyclic-nucleotide 2'- reductase: CoA repair ACP synthase a [cysteine desulfurase]- S-methyl-5'- tRNA 2- DNA-3- protoheme IX jaqu_RS15540 phosphatase: RS02135 RS08995 reductase 5,6-dimethylbenzimidazole adenosylcobinamide riboflavin kinase/ jaqu_RS17800 phosphate SurE: surE tRNA 2- jaqu_RS10630 pyrazinamidase: protein GspD II: fabF a stearoyl-[acp] [scaffold protein- acetyl-CoA leucyl/ thioadenosine uridine arginyltransferase: thiouridine(34) methyladenine phosphodiesterase/ otsB reductase: kinase/ FAD synthetase: adenosylcobinamide aldolase: deoC selenouridine(34) farnesyltransferase: D-glycerate pncA trehalose- RecO: FabG: fabG (2Fe-2S)] complex 2-amino-3- phenylalanyl- (S)-3- phosphorylase: pyrimidine 5'- jaqu_RS06355 synthase glycosylase I: 3'-nucleotidase: 9-hydroxy-3,5,7,11,13,15-[+ 6 isozymes] phbB beta-ketoacyl- nicotinate-nucleotide-- jaqu_RS02005 jaqu_RS18930 dehydrogenase: 3-oxopentanoyl- LptG a (3R)-3- 3-demethylubiquinol-8 protoporphyrin IX adenosylcobinamide- carboxymuconate- hydroxyoctanoyl-CoA nucleotidase: synthase jaqu_RS00965 hexaoxohexadecanoyl- amidase: cis-methoxy- a stabilizedrecO ACP synthase a 7,8-dihydrofolate dimethylbenzimidazole adenosylcobinamide tRNA--protein jaqu_RS20000 MnmA: mnmA jaqu_RS08055 CoA hydroxytetradecanoyl- phosphate oxaloacetate MnmH: mnmH a ribonucleoside jaqu_RS19020 jaqu_RS07415 mono-mycolate RecA filament- precorrin-7 FAD 6-semialdehyde amidohydrolase: transferase: acetaldehyde D-glyceraldehyde 3-phosphate jaqu_RS02400 [PKS-acp] pyrazine-2- [acp] I: fabB bifunctional 2- ferrochelatase: phosphoribosyltransferase: guanylyltransferase: 5-deoxy-α-D- an N-terminal L- 3'-phosphate citrate (Si)-synthase: gltA jaqu_RS18420 a [protein] hydroxypyruvate DNA complex a [co-chaperone]- cobT jaqu_RS03710 an N-terminal pseudouridine Arg arginiyl-3-sulfo- a [protein]- a 2-thiouridine 34 ferroheme o carboxylate 3-hydroxyacyl- polyprenyl-6- jaqu_RS15590 jaqu_RS18200 (R)-1-amino- N-terminal L- ribose 1-phosphate cytidine a 5-methylaminomethyl- (2E)-3,7- a tRNA an apurinic site a leader sequence a peptide RS14055 RS08485 a 3-oxooctanoyl-[acp] stearate 3-methyladenine Pal ACP [scaffold protein- hydroxyphenol α 2-propanol O L-lysyl-[protein] degradation 34 L-alanyl-[protein] L-cysteine in tRNA within DNA -ribazole adenosylcobinamide- adenosylcobyrate leucyl-L-lysine 3-oxooctanoyl-CoA S-methyl-5- 2-selenouridine dimethylocta- dehydratase (2Fe-2S)] complex methylase/3- coenzyme A biosynthesis protoheme -2-phosphate 3-oxoacyl-ACP acyl-CoA a tetrahydrofolate 5'-phosphate GDP quinolinate thioribose-1- in tRNA 2,6-diene-1-thiol RS06495 FabZ: fabZ demethylubiquinol 3- I (prokaryotic) malate dehydrogenase: mdh acetyl-CoA C- purine ribonucleosides degradation pseudouridine reductase synthetase: precorrin-8x (S)-malate citrate phosphate acetyl-CoA O-methyltransferase pyridoxal 5'-phosphate biosynthesis I acyltransferase: bifunctional 3- FabG: fabG jaqu_RS03860 (R)-4'- adenosylcobinamide- isomerase: mtnA an N-terminal a peptide with adenosine 6-O-trans-keto- a 2,3,4- precorrin-8X a [chaperone-ATP]- UbiG: ubiG jaqu_RS01845 an L-arginyl- (S)-5-amino-3- phytyl a mismatched hydroxydecanoyl- phosphopantothenate GDP 5-deoxy-D-ribulose cob(II)inamide acetyl-CoA O-succinyl-L- D-glycerate a phenyl acetate mycolyl-trehalose saturated (3R)-3- RS08680 a (3R)-3- stearoyl-CoA methylmutase: bifunctional adenosyl- aconitate hydratase pseudouridine 3-sulfino-L- Arg oxohexanoate chlorophyllide a an N-terminal 2',3'-cyclic DNA base pair RS20165 MurJ ACP dehydratase/ [co-chaperone]- D-erythrose acetyl-CoA C- adenosine ATP [tRNA ] homoserine 2 diphosphate GTP ubiquinol-8 ribazoletransferase: cobinamide AcnA: acnA 1-phosphate 5'-phosphate alanyl-[protein] L-proline monophosphate D-glycerate 6-phosphate hydroxyacyl-CoA DNA trans-2- hydroxyoctanoyl-[acp] jaqu_RS14735 [scaffold protein- phosphopantothenoylcysteine 4-phosphate NaMN class II fumarate Glycolysis acyltransferase: bifunctional 2',3'- trehalose- acetoacetyl- bis(guanylyl molybdopterin) cobS phosphate adenylate/guanylate dehydrogenase: mismatch RS16380 3-hydroxyacyl- (2Fe-2S)] complex decarboxylase/ hydratase: fumC cyclic-nucleotide 2'- CoA decenoyl-ACP hydrogenobyrinate cofactor sulfurylation D-erythrose- jaqu_RS12570 adenosine pseudouridine- 3-keto-5- chlorophyll cyclase domain- jaqu_RS19020 arylesterase: phosphatase: repair ACP dehydratase phosphopantothenate-- nicotinate-nucleotide bifunctional fumarate cis-aconitate cob(I)yrinic acid arginyltransferase: phosphodiesterase/ reductase: isomerase: fabA 4-phosphate aconitate hydratase glycolysis III (from glucose) deaminase: 5'-phosphate aminohexanoate O-succinylhomoserine synthase prolyl containing protein: jaqu_RS08525 otsB protein (R)-4'- cysteine ligase CoaBC: coaBC adenosylcobalamin adenylyltransferase: adenosylcobinamide hexanoyl-CoA 3'-nucleotidase: D-glycerate trehalose- phbB FabZ: fabZ dehydrogenase: AcnA: acnA jaqu_RS00330 glycosidase: a,c-diamide jaqu_RS06355 cleavage protein: sulfhydrylase: metZ ChlG: chlG aminopeptidase: pip a (2E)-tetradec- cys 5'-phosphate jaqu_RS19870 kinase/ jaqu_RS00965 jaqu_RS20635 dehydrogenase: trans-keto- a 2,3,4-saturated MutS: mutS RS21525 phosphopantothenoyl- gap acetaldehyde jaqu_RS03260 adenosyltransferase: jaqu_RS15035 cyclic-GMP a properly porin RS08885 2-enoyl-[acp] bifunctional 3- adenosylcobinamide- D-glucopyranose acyl-CoA DHAP jaqu_RS15540 mono-mycolate 3-oxoacyl-CoA a [chaperone- adenosylcobalamin L-cysteine 4-phospho- nicotinate adenine xanthosine adenosine inosine guanosine jaqu_RS01065 3'-AMP matched hydroxydecanoyl- hydrogenobyrinate an [2Fe-2S] cysteine phosphate dehydrogenase: uracil an N-terminal L- acetate a phenol enoyl-ACP ADP]-[disordered- salvage from cobalamin bifunctional dinucleotide hydroxypyruvate DNA base pair RS16405 ACP dehydratase/ cluster protein desulfurase: D-erythronate glucokinase: Arg arginiyl-3-sulfino- (S)-3- succinate chlorophyll a a,c-diamide form scaffold phosphopantothenoylcysteine guanylyltransferase: D-threo-isocitrate jaqu_RS05745 a tRNA L-homocysteine 2 a peptide pro reductase trans-2- erythronate- NAD+ synthase: succinate jaqu_RS00180 adenosylcobinamide acetoacetate cobaltochelatase protein] complex cob(I)alamin jaqu_RS01700 decarboxylase/ adenosylcobalamin jaqu_RS18200 NADP-dependent [+ 3 isozymes] triphosphate L-alanyl-[protein] aminobutanoyl-CoA FabI: fabI decenoyl-ACP 4-phosphate jaqu_RS18760 isocitrate dehydrogenase: purine-nucleoside purine-nucleoside purine-nucleoside purine-nucleoside subunit CobN: cysteine phosphopantothenate-- ADP-forming succinate- D-glucopyranose enoyl-ACP isomerase: fabA dehydrogenase: adenosylcobinamide- jaqu_RS06480 (2E)-hexenoyl-CoA phosphorylase: phosphorylase: phosphorylase: phosphorylase: PhnE jaqu_RS15900 desulfurase: cysteine ligase CoaBC: coaBC + 6-phosphate reductase: jaqu_RS12600 NAD GDP -CoA ligase: sucD sucC deoD deoD deoD deoD jaqu_RS01735 glucose-6- pyrimidine deoxyribonucleotides jaqu_RS13660 a (2E)-oct-2-enoyl-[acp] cobaltochelatase: an [Fe-S cluster cob(II)alamin enoyl-CoA lysine within β-D-fructofuranose guanosine a uridine 38- cytidine an [L-cysteine 4'-phosphopantetheine (3R)-3-hydroxy-2-oxo- dephosphorylation isobutanoate glycerophosphoserine phytyl histidinol α-amylose sn-glycerol pyridoxamine RS15005 cobS cobT phosphate hydratase: α cob(II)alamin an octanoyl-[acp] chlorophyllide b 1-phosphate 2',3'-cyclic biosynthesis desulfurase]-S- 2-methyladeninyl adenosylcobamide succinyl-CoA 2-oxoglutarate -D-ribose- ATP gcv protein H 2 diphosphate 40 in tRNA 3-phosphate 5'-phosphate nucleoside cob(I)yrinic acid 4 phosphooxybutanoate isomerase: pgi nucleoside triphosphate histidinol 1,4-alpha-glucan a myristoyl-[acp] acyl-CoA/acyl-ACP cob(II)yrinate chaperone]-ATP pantetheine- biosynthesis from adenosylcobinamide-GDP jaqu_RS17800 1-phosphate monophosphate RluA family glycerol-3- a,c-diamide sulfanyl-L-cysteine phosphoserine pyrophosphohydrolase: bifunctional 2',3'- branching pyridoxamine deaminase: dehydrogenase: a,c-diamide (S)-3- S-methyl-5'- dehydrogenase: hisD pseudouridine adenosyltransferase: cysteine phosphate D-glyceraldehyde pyruvate adeninyl adenosylcobamide biosynthesis F6P mazG phosphopentomutase: glycerophosphodiester fructose cyclic-nucleotide 2'- phosphate 5'-phosphate jaqu_RS03015 beta-ketoacyl- jaqu_RS01135 transaminase: adenosine lipoyl(octanoyl) acetate--CoA chlorophyll histidinol protein GlgB: glgB synthase: RS06515 desulfurase: adenylyltransferase: 3-phosphate 2-methyladenine from adenosylcobinamide-GDP hydroxyhexanoyl-CoA dCTP dCMP thioadenosine cob(I)yrinic acid phosphodiesterase/ dehydrogenase: oxidase: pdxH jaqu_RS01065 folate transformations III (E. coli) jaqu_RS12605 2-oxoglutarate nucleotides jaqu_RS00325 transferase phosphodiesterase: synthase bisphosphate cytidine ACP synthase [+ 2 isozymes] jaqu_RS01700 coaD degradation II ligase: acs dehydrogenase: hisD 1,4-alpha-glucan jaqu_RS19405 glpD cob(II)alamin- dehydrogenase E1 degradation III a,c-diamide LipB: lipB jaqu_RS10060 aldolase: 3'-nucleotidase: deaminase: RS14470 II: fabF bis(guanylyl 4-phosphooxy- 1-deoxy-D- nicotinate-nucleotide-- D-ribose 5- S-methyl-5'- ChlG: chlG branching [+ 3 isozymes] PLP [corrinoid cysteine 3'-dephospho- dUTP diphosphatase: dut adenosyltransferase: jaqu_RS05160 jaqu_RS00965 his 38- DHAP an octanoyl-[acp] molybdopterin) L-threonine dimethylbenzimidazole adenine component: jaqu_RS02510 phosphate protein GlgB: glgB a pseudouridine jaqu_RS00315 beta-ketoacyl- benzimidazolyl adenosylcobamide desulfurase: a tetrahydrofolate xylulose-5- β thioadenosine jaqu_RS01065 adenosyltranferase] CoA phosphoribosyltransferase: -D-fructose 1,6- nucleoside triphosphate S-methyl-5'- a [glycine-cleavage 3'-GMP 40 in tRNA uridine ACP synthase cofactor 4-hydroxythreonine- phosphate 3-oxohexanoyl-CoA AMP isobutanoyl-CoA diphosphate sn-glycerol amylopectin phosphatidylglycerol biosynthesis from adenosylcobinamide-GDP jaqu_RS01735 dephospho- cobT bisphosphate pyrophosphohydrolase: thioadenosine acyl-carrier protein complex H protein] AMP ser chlorophyll b nicotinate-nucleotide-- AMP 2 I: fabB 4-phosphate synthase: 6 3-phosphate D-glyceraldehyde ChrA biosynthesis I (plastidic) a [bis(guanylyl CoA kinase: mazG phosphorylase: adenosylcobalamin N -octanoyl-L-lysine DHAP dehydrogenase jaqu_RS05925 dimethylbenzimidazole acetyl-CoA C- nucleosidase: a 3-oxohexadecanoyl- benzimidazole molybdopterin) jaqu_RS16280 fructose dUTP dUMP jaqu_RS20000 triphosphate cob(I)alamin- PdxA: pdxA 2-methyladenine phosphoribosyltransferase: Respiration acetyltransferase: jaqu_RS07225 RS16470 [acp] DHAP cofactor [bis-MGD cofactor 5-MTR-1-P nicotinate-nucleotide-- [corrinoid 3-amino-1- 1-deoxy-D- adenosylcobinamide- ribotide phosphate cobT bisphosphate jaqu_RS08040 adenine phosphatidylglycerol chaperone]-S- chaperone]- coenzyme A aldolase: 3-oxoacyl- dimethylbenzimidazole adenosyltranferase] hydroxyacetone xylulose 5- GDP [+ 3 isozymes] biosynthesis II (non-plastidic) sulfanyl-L-cysteine bis-MGD 2-oxoglutarate decarboxylation to succinyl-CoA 5-hydroxy-CTP 5-hydroxy-CMP 2503 an [amino-group carrier ACP cob(I)yrinic acid 1-phosphate adenine ribotide jaqu_RS05160 adenine an L-arginyl- 3,4-dihydroxyphenylacetyl- phytyl succinate luteolin 7-O-β- a [protein] C-terminal phosphoribosyltransferase: serine phosphate coenzyme A an apo [peptidyl- (S)-2- protein]-C-terminal-γ- [DNA] 5-deoxy-D-ribose sn-glycerol a,c-diamide adenosylcobinamide- phosphate butanoyl-CoA in 23S rRNA a protein Arg CoA chlorophyllide a glu L-homoserine semialdehyde D-diglucuronide S-farnesyl-L-cysteine Ffh reductase cobT a 7,8-dihydrofolatehydroxymethyltransferase:a 5-methyltetrahydrofolate adenosylcobinamide- a [2-oxoglutarate carrier protein] [tRNA ] diphosphate aminobutanoate S-methyl-5- DHAP 3-phosphate adenosyltransferase: GDP (L-glutamyl)-L-glutamate DNA NAD-dependent heme FabG: fabG benzimidazole jaqu_RS11515 pyridoxine 5'- GDP dehydrogenase triose- homoserine O- thioribose a (3R)-3- jaqu_RS01065 acyl-CoA acetylglutamate polymerase succinate- peroxidase: RS01520 glycerol-3- adenosylcobinamide- ribotide phosphate ribazoletransferase: E2 protein] N 6 23S rRNA hydroxyphenylacetyl- adenosylcob(III) sulfo-bis(guanylyl 2-oxoglutarate phosphate dehydrogenase: holo-ACP chlorophyll succinyltransferase: III subunit chi: semialdehyde kinase: hydroxyhexadecanoyl- phosphate 1-O- GDP phosphate synthase: cobS adenosylcobinamide- CoA thioesterase glutamate-- kinase: argB jaqu_RS07115 sn-glycerol molybdopterin) bifunctional a (6S)-5-formyltetrahydrofolate -lipoyl-L-lysine dehydrogenase isomerase: jaqu_RS05745 (adenine(2503)-C(2) synthase: arginyltransferase: synthase jaqu_RS10870 jaqu_RS02155 mtnK [acp] acyltransferase alamin-[corrinoid GDP cysteine ligase: an [amino-group carrier dehydrogenase: a radical of a [protein] C-terminal α 3-phosphate cofactor methylenetetrahydrofolate methylenetetrahydrofolate jaqu_RS08605 jaqu_RS04910 Inorganic Nutrient Metabolism )-methyltransferase jaqu_RS06355 PaaI: paaI 5-deoxy- - adenosyltranferase] thiamine diphosphate α α ribazoletransferase: 2-oxoglutarate E1 component: D-glyceraldehyde [+ 3 isozymes] jaqu_RS08625 ChlG: chlG O-succinyl-L- [+ 3 isozymes] jaqu_RS19035 luteolin-7-O- S-farnesyl-L- 3-hydroxyacyl- PlsY: plsY adenosylcobinamide- reductase: jaqu_RS02490 dehydrogenase/5-formyltetrahydrofolate Co -[ -(2- DHAP RlmN: rlmN jaqu_RS05670 protein]-C-terminal- a 2'- D-ribose 1- RS17595 ACP glycerol-3- a 1-acyl-sn cob(I)yrinic acid biosynthesis III methyladenin-9-yl)]-Co cobS dehydrogenase jaqu_RS02510 3-phosphate γ homoserine succinate diglucuronide cysteine methyl ester GDP methylenetetrahydrofolate methenyltetrahydrofolatecyclo-ligase: jaqu_RS10555 pyridoxine crotonyl-CoA (3,4- -(5-phospho-L- deoxyribonucleoside phosphate dehydratase phosphate 1-O- -glycerol 3- a,c-diamide (Staphylococcus) β-adenosylcobamide E1 component: type I selenate reduction ribazoletransferase: reductase [NAD(P)H]: metF cyclohydrolase FolD: folD 5'-phosphate assimilatory urea cycle sulfate activation 3',5'-ADP a holo [peptidyl- an N-terminal coenzyme A dihydroxyphenyl) γ-L-glutamyl-(S)- glutamyl)-L-glutamate 5'-monophosphate SecF acyltransferase phosphate adenosyltransferase: 2-(2-carboxy-4- Coα-[α-(adenin-9-yl)]- jaqu_RS02510 a 2-methyladenine 2503 a tRNA Arg chlorophyll a FabZ: fabZ cobS a 5,10-methylenetetrahydrofolate a 5,10-methenyltetrahydrofolate 5'-phosphate glyceraldehyde- enoyl-CoA sulfate reduction IV for sulfonation 5'-deoxyadenosine carrier protein] arginyl-[protein] acetate 2-aminobutanoate PlsY: plsY 1-acyl-sn-glycerol- jaqu_RS01065 heme b biosynthesis II pyridoxamine HMP-PP methylthiazol-5- Coβ-adenosylcobamide [+ 2 isozymes]a [2-oxoglutarate a [2-oxoglutarate 3-phosphate in 23S rRNA met bifunctional 3- hydratase: selenate a 1-acyl-sn 3-phosphate α α (oxygen-independent) bifunctional 5'-phosphate yl)ethyl phosphate 5'-phosphate 5-methylbenzimidazolyl adenosylcobamide dehydrogenase dehydrogenase dehydrogenase: ammonium hydroxydecanoyl- Co -[ - jaqu_RS17800 bifunctional sulfate sulfate sulfate -glycerol 3- adenosylcobalamin oxidase: pdxH 6 E2 protein] N 6 -S- RS05780 acyltransferase: (benzimidazolyl)]-Co methylenetetrahydrofolate biosynthesis from adenosylcobinamide-GDP E2 protein] N gap adenylyltransferase/ bifunctional sulfate arg ACP dehydratase/ phosphate uroporphyrinogen-III thiamine Coα-[α-(2- (S)-3- carbamoyl- bifunctional sulfate jaqu_RS04990 β-adenosylcobamide dehydrogenase/ -dihydrolipoyl- succinyldihydrolipoyl- an apo-[LYS2 L- RNase III mRNA 1498 trans-2- PLP methyladenin-7-yl)]-Co hydroxybutanoyl-CoA adenylylsulfate adenylyltransferase/ phosphate adenylyltransferase/ 5-methoxy-6- phytyl a ribonucleoside a uracil 1-acyl-sn-glycerol- uroporphyrinogen phosphate 5-methylbenzimidazole L-lysine L-lysine NaMN coenzyme A glycerophosphoglycerol RNA a DNA segment acetyl-CoA RS07170 [+ 3 isozymes] 5'-phosphate molybdopterin biosynthesis methenyltetrahydrofolate β α α 13-DPG kinase: jaqu_RS03275 adenylylsulfate adenylylsulfate methylbenzimidazole 2-aminoadipyl- processing chlorophyllide b thr leu decenoyl-ACP 3-phosphate a 1,2-diacyl- decarboxylase: synthase: -adenosylcobamide Co -[ -(adenin-7-yl)]- adenosine 5'- synthase diphosphate 3'-phosphate in 16S rRNA ATP cyclohydrolase FolD: folD kinase: jaqu_RS03275 carrier-protein] substrate 16S rRNA malonyl-CoA isomerase: fabA acyltransferase: jaqu_RS11325 Coβ-adenosylcobamide nicotinate-nucleotide-- phosphoselenate large kinase: jaqu_RS03275 bifunctional 2',3'- threonine/serine recombinase sn-glycerol jaqu_RS09090 dipyrromethane phosphoglycerate (uracil(1498)-N(3))- adenylate/guanylate synthase: amino acid 10 APS APS cyclic-nucleotide 2'- RecA: recA jaqu_RS04990 3-phosphate molybdenum cofactor biosynthesis coproporphyrinogen III cys an N -formyltetrahydrofolate dimethylbenzimidazole kinase: argininosuccinate subunit: carB nicotinate-nucleotide-- glycerophosphodiester dehydratase: racemase: a (2E)-hexadec- α α cofactor biosynthesis 2-oxoglutarate holo-ACP ribonuclease T2: chlorophyll methyltransferase: cyclase domain- jaqu_RS03905 RS16205 Co -[ - phosphoribosyltransferase: acetoacetyl-CoA lyase: dimethylbenzimidazole ribonuclease phosphodiesterase: phosphodiesterase/ jaqu_RS13680 [+ 3 isozymes] 2-enoyl-[acp] [+ 3 isozymes] phosphatidate ATP thiamine jaqu_RS05175 bifunctional sulfate glutamine- bifunctional sulfate synthase: jaqu_RS05570 synthase jaqu_RS05655 containing protein: a DNA segment jaqu_RS17365 a 1,2-diacyl- (benzimidazolyl)]-Co oxygen-independent dehydrogenase jaqu_RS21350 3'-nucleotidase: an N 3 - [+ 4 isozymes] cytidylyltransferase: glutathione- cysteine GTP thiamine diphosphate cytidylyl molybdenum phosphate an apo-[hydroxymethylbilane cobT adenylyltransferase/ hydrolyzing phosphoribosyltransferase: III: rnc jaqu_RS10060 [+ 2 isozymes] enoyl-ACP β-adenosylcobamide molybdate coproporphyrinogen E1 component: acetyl-CoA C- adenylyltransferase/ jaqu_RS08625 ChlG: chlG jaqu_RS00965 1498 jaqu_RS20635 in reverse malonyl-CoA sn-glycerol jaqu_RS11210 glutaredoxin desulfurase: cofactor sulfurylation synthase]-L-cysteine 3-phospho-D-glycerate argininosuccinate cobT methyluracil 2-oxobutanoate D-leucine RS09120 reductase III oxidase: hemN biosynthesis I (E. coli) adenosylcobinamide- 5-methylbenzimidazole jaqu_RS02510 acetyltransferase: selenite adenylylsulfate carbamoyl- adenylylsulfate cyclic-AMP orientation 3-phosphate redox reactions lyase: argH an [RNA]-3'- a 5'-hydroxy- a ribonucleoside in 16S rRNA a CDP- molybdenum jaqu_RS01700 GTP 3',8- cytidylyl molybdenum ribotide phosphate kinase: jaqu_RS03275 L-arginino- phosphate kinase: jaqu_RS03275 a holo-[LYS2 L- FabI: fabI phosphatidate molybdopterin oxygen-independent 2-[(2R,5Z)- GDP 2-oxoglutarate 2,3-bisphosphoglycerate- jaqu_RS00390 L-ornithine RNase III glycerol sn-glycerol ribonucleoside- ribonucleotide- diacylglycerol ABC cysteine a [hydroxymethylbilane succinate synthase 5-methoxy-6- 3',5'-ADP 2-aminoadipyl- an mRNA fragment chlorophyll b Zn 2+ RS11750 Zn 2+ enoyl-ACP cytidylyltransferase: glutathione coproporphyrinogen cyclase 2-carboxy-4- cofactor (trioxo) independent [+ 3 isozymes] processing 3-phosphate 3'-phosphate 3'-[RNA] transporter desulfurase: a carboxy- [aromatic synthase] ES intermediate dehydrogenase PAPS small PAPS methylbenzimidazole nicotinate carrier-protein] MoaA: methylthiazol-5(2H thiamine 2 adenosylcobinamide- product mRNA reductase: jaqu_RS11210 ATP-binding III oxidase: hemN adenylated aldehyde complex phosphoglycerate argininosuccinate ribotide phosphate jaqu_RS01735 moaA )-ylidene]ethyl hydroxymethylbilane GDP acetyl-CoA phosphoadenylyl- subunit: carA jaqu_RS13660 a CDP- protein: modC an [L-cysteine [small subunit of HMP-PP oxidoreductase S-adenosyl-L- dihydrolipoyllysine- mutase: jaqu_RS09585 selenodiglutathione synthase: RS04510 molybdopterin a reduced protoporphyrinogen IX (8S)-3',8-cyclo-7,8- phosphate thiamine synthase: hemC ribazoletransferase: sulfate reductase: diacylglycerol 1-(3-sn- desulfurase]-S- molybdopterin PaoABC] MCD methionine salvage II residue jaqu_RS06025 carbamoyl dihydroguanosine diphosphokinase: a 5,6- a palmitoyl-[acp] phosphatidyl) molybdate adenine glutaredoxin chaperone: xdhC a [hydroxymethylbilane cobS succinyltransferase: 2-phospho-D-glycerate jaqu_RS00885 phosphate sn-glycero-3- a [release factor]- RS09210 sulfanyl-L-cysteine synthase] ornithine 5-methoxybenzimidazole NaMN coenzyme A AsbD acyl- [EntB aryl- a ribonucleoside a single 20 DNA with lesion an unfolded dinucleotide 5'-triphosphate thiamine an [MCD cofactor jaqu_RS02875 coenzyme A dihydrolipoamide dihydrouracil acetoacetyl-CoA crotonyl-CoA -sn-glycerol glutathione- SAH synthase] ES intermediate odhB carbamoyltransferase: phosphoethanolamine triphosphate L-glutamine purine cyclic pyranopterin chaperone]-MCD 3 α α phosphopyruvate sulfite carrier protein carrier protein] stranded DNA protein 3-phosphate phosphate thiamine Co -[ -(5- pyruvate peptide chain in tRNA 3-hydroxybutyryl- excinuclease crotonyl-CoA dependent monophosphate Degradation/Utilization/ argF tRNA 1-(3-sn- molybdopterin synthase: cysteine diphosphate adenosylhomocysteinase: hydroxymethylbilane methylbenzimidazolyl)]- hydratase: eno dehydrogenase release factor CoA ABC subunit carboxylase/ phosphatidylglycerophosphatase disulfide-bond glutathioselenol glycerophosphodiester dihydrouridine(20/ xanthine chaperonin phosphatidyl) molybdenumtransferase protoporphyrin IX synthase jaqu_RS14290 synthase: hemC Coβ-adenosylcobamide Assimilation - Other nicotinate-nucleotide-- holo-ACP holo-ACP UvrA: uvrA reductase: oxidoreductase: jaqu_RS11325 desulfurase: assimilatory L-citrulline DNA primase: complex N(5)-glutamine 20a) synthase dehydrogenase: dehydrogenase: GroEL: groL MalF A: jaqu_RS00245 a thiocarboxylated MoaC: moaC 5'-phosphate phosphoenolpyruvate dimethylbenzimidazole phosphodiesterase: palmitate -sn-glycerol menaquinol-7 biosynthesis MoeA: jaqu_RS13635 jaqu_RS01700 L-homocysteine a [hydroxymethylbilane synthase: synthase: dihydrolipoamide methyltransferase: jaqu_RS01085 xdhB xdhA [+ 2 isozymes] ccrA an L-1- yghU ferrochelatase: [small subunit of cyclic 2-oxoisovalerate decarboxylation to isobutanoyl-CoA octane oxidation sulfate reduction III phosphoribosyltransferase: jaqu_RS10060 jaqu_RS08820 DusA: dusA (S)-3- DNA without (2S)- RS05805 3-phosphate molybdopterin synthase] ES intermediate jaqu_RS08625 jaqu_RS08625 acetyltransferase: prmC 20 thiamine cysteine 4 thiosulfate oxidation III (multienzyme complex) phosphatidyl- molybdopterin pyranopterin pyruvate hydrogen sulfide cobT 5 a uracil in tRNA hydroxybutanoyl- 8-hydroxypurine a protein acyl-CoA all-trans- molybdotransferase glutaredoxin jaqu_RS15590 jaqu_RS05140 a [release factor]-N lesion ethylmalonyl-CoA phosphatidylglycerophosphatase sn-glycerol synthase] phosphate phosphate desulfurase: bis(guanylyl molybdenum hydroxymethylbilane an [apo BCAA sulfate CoA synthetase: 1,4-dihydroxy- 3: grxC kinase: pyk NADH hydrogen selenide -methyl-L-glutamine A: jaqu_RS00245 heptaprenyl MoeA: jaqu_RS06325 jaqu_RS01735 Coα-[α-(5- dehydrogenase a holo-[AsbD acyl- sn-glycerol ssDNA/pppN(pN) a protein with protoheme cofactor) biosynthesis synthase: hemC alpha-ketoacid bifunctional sulfate a [SoxY protein]-L-cysteine 3',5'-ADP 3',5'-ADP a holo-[EntB aryl- ethanolamine S-acetyldihydrolipoamide jaqu_RS03860 diphosphate 2-naphthoate 6 hybrid an L-1- a [cytidylyl molybdenum methylbenzimidazolyl)]- E2 protein] N adenylyltransferase/ 5-methoxybenzimidazole carrier protein] carrier protein] 3-phosphate n -1 MoO - reduced L- MoO - a holo-[hydroxymethylbilane dehydrogenase pyruvate nicotinate RS17320 phosphatidyl- 2 cofactor chaperone]- 2 met Coβ-adenosylcobamide -lipoyl-L-lysine adenylylsulfate ribotide phosphate palmitoyl-CoA molybdopterin cysteine residues molybdopterin synthase] subunit beta: sn-glycerol thiamine NAD salvage pathway V (PNC V cycle) cytidylyl molybdenum molybdopterin dihydrolipoyl kinase: jaqu_RS03275 RS01205 cofactor glutathione cofactor jaqu_RS03180 molybdopterin cofactor (sulfo-dioxo) methionine biosynthesis diphosphate dehydrogenase: a reduced L-cysteine degradation III APS NAD salvage pathway II (PNC IV cycle) adenosyltransferase: alpha-ketoacid octane a [SoxY protein]-S- UDP an [RNA]-3'- demethylmenaquinol-7 NAD + molybdenum cofactor lpdA rubredoxin 5-hydroxybenzimidazole NaMN coenzyme A an apo-[aryl- coenzyme A [EntF L-seryl- melibionate 3'-cmp an aromatic selenide NAD-dependent dehydrogenase phosphoadenylyl- sulfosulfanyl-L-cysteine coenzyme A ribonucleoside- (S)-5-hydroxyisourate acetaldehyde CAIR guanylyltransferase jaqu_RS08575 folate polyglutamylation dihydrolipoyl carrier protein] carrier protein] adenosylcobalamin- amino acid cys glu deacylase: subunit beta: NADPH repair (prokaryotes) sulfate reductase: 2',3'- bifunctional 2',3'- aldehyde 5-(carboxyamino) selenide, RS20140 bifunctional NAD + MobA: mobA cys dependent ribonucleoside- aspartate/ tetrahydrofolate salvage from jaqu_RS13345 SAM dehydrogenase: jaqu_RS16070 alkane 1- hydroxyisourate cyclic-nucleotide 2'- dehydrogenase imidazole water demethylmenaquinone NAD(+) NAD+ synthase: jaqu_RS00885 alpha- cyclophosphateRNA 2',3'-cyclic tyrosine/aromatic RS11920 5,10-methenyltetrahydrofolate thioredoxin a tetrahydrofolate lpdA monooxygenase: nicotinate-nucleotide-- holo-ACP holo-ACP diphosphate reductase: hydrolase: uraH phosphodiesterase/ dikinase methyltransferase/2- diphosphatase: glutathione- jaqu_RS18760 an [apo BCAA an [apo BCAA dehydrogenase NADPH cytochrome c: CoA pyrophosphatase: galactosidase: (NADP(+)): ribonucleotide NAD+ synthase: glutamate-- pathway bis(molybdenum jaqu_RS02975 sulfite dimethylbenzimidazole jaqu_RS19740 phosphodiesterase: 3'-nucleotidase: aminotransferase: SelD: selD nudC peroxide dehydrogenase 6 synthase: synthase: jaqu_RS05985 jaqu_RS18680 (S)-2-oxo-4- jaqu_RS09860 mutase: purE methoxy-6-polyprenyl- a 5,10- jaqu_RS18760 cysteine ligase: cofactor) E2 protein] N -S-[2- jaqu_RS04725 phosphoribosyltransferase: thpR jaqu_RS02390 nicotinate adenine dinucleotide nicotinamide 6 alkane 1- jaqu_RS08625 jaqu_RS08625 vitamin B12-dependent an [RNA]-3'- hydroxy-4-carboxy- jaqu_RS00965 1,4-benzoquinol methenyltetrahydrofolate redox reactions an oxidized bifunctional serine formate--tetrahydrofolate E2 protein] N - methylpropanoyl]dihydrolipoyl- assimilatory sulfite cytochrome c: an aromatic acetate AIR selenophosphate bifunctional NAD+ synthase: jaqu_RS05670 molybdenum cofactor monooxygenase: cobT ribonucleotide reductase: ribunucleoside- methylase UbiE: ubiE bifunctional thioredoxin folylpolyglutamate hydroxymethyltransferase: ligase: jaqu_RS14460 dihydrolipoyl-L-lysine L-lysine reductase (NADPH) a [SoxY protein]-S- a [SoxY protein]-S α 5-ureidoimidazoline cytidine 2-oxo-acid GSSG guanylyltransferase jaqu_RS07315 3-mercaptopyruvate jaqu_RS15840 -D- RS16735 methylenetetrahydrofolate jaqu_RS18760 nicotinamidase/ jaqu_RS11515 a holo-[EntF 4'-phosphopantetheine jaqu_RS12185 D-gluconate 2'-phosphate γ-L-glutamyl- nicotinate-nucleotide MobA: mobA synthase/dihydrofolate : jaqu_RS00880 disulfanyl-L-cysteine -sulfanyl-L-cysteine 3',5'-ADP a holo-[aryl- 3',5'-ADP 3',5'-ADP galactopyranose menaquinol-7 dehydrogenase/ nicotinate adenine pyrazinamidase: pncA L-seryl-carrier dUDP RS15215 NMN synthase: jaqu_RS09645 10 (R)-NADPHX 5-hydroxybenzimidazole carrier protein] methenyltetrahydrofolate dinucleotide L-cysteine adenylyltransferase: bis(guanylyl an N -formyltetrahydrofolate bifunctional acrylonitrile nicotinate protein] thioredoxin- octan-1-ol 3-mercaptopyruvate hydrogen sulfide ribotide phosphate cyclohydrolase FolD: folD glutathione- glutathione jaqu_RS19870 NaMN nicotinate molybdopterin) a 5,10-methylenetetrahydrofolate ADP-dependent degradation I an N 10 - disulfide bifunctional sulfurtransferase: disulfide synthase: cofactor a tetrahydrofolate ATP NAD(P)H-hydrate sseA formyltetrahydrofolate reductase: bifunctional folylpolyglutamate biosynthesis acrylonitrile sulfoacetaldehyde degradation I reductase: gshB dehydratase/ polyphosphate 10 a 2,3,4-saturated a (1->4)- uridine 2'3'-cyclic (3R)-3- 6-O-α-mycolyl- 4-methyl-3- RS18565 phosphoribosylglycinamide nicotinate-nucleotide trxB folylpolyglutamate synthase/dihydrofolate an L-methionyl- an N - an (R)-2- dCDP (2R,3S)-3- 3'-UMP L-malic guanylyl molybdenum gor Pentose Phosphate Pathways NAD(P)H-hydrate nitrile hydratase metabolism glutathione α monophosphate hydroxyoctadecanoyl- trehalose 6- oxoadipate- adenylyltransferase: nicotinate Met formyltetrahydrofolate hypoglycin A 1,2-diacyl-sn- halocarboxylate -D-glucan isopropylmalate semialdehyde formyltransferase: glutathione synthase/dihydrofolate synthase: jaqu_RS09645 subunit alpha: hydrogen sulfide pyruvate a [SoxY protein]-S-(2- [initiator tRNA ] adenosylcobalamin- bifunctional 2',3'- RS06545 cofactor biosynthesis jaqu_RS19870 lipoate biosynthesis phosphoribosyltransferase: epimerase: 1-octanal sulfoacetaldehyde glycerol 3-phosphate CTP 3-isopropylmalate bifunctional 2',3'- CoA aldehyde phosphate enol-lactone jaqu_RS04460 synthase: jaqu_RS09645 ADP jaqu_RS11255 sulfodisulfanyl)-L-cysteine long chain dependent ribonucleoside- acetoacetyl- trehalose- 3-oxoadipate MoO - NaMN and incorporation I bis(guanylyl tungstenpterin) an N 10 -formyltetrahydrofolate pentose phosphate jaqu_RS05510 cyclic-nucleotide 2'- dehydratase cyclic-nucleotide 2'- dehydrogenase 2 pncB a reduced thiosulfate alpha menaquinol-8 biosynthesis F0F1 ATP (S)-NADPHX acrylamide polyphosphate HAD family diphosphate reductase: phosphodiesterase/ phosphodiesterase/ CoA phosphatase: enol- molybdopterin a tetrahydrofolate glutathione cofactor biosynthesis a 5,10-methylenetetrahydrofolate pathway (oxidative branch) I disproportionation methionyl-tRNA phosphatidate glucosidase: large subunit: leuC (NADP(+)): thioredoxin synthase: sulfoacetaldehyde gamma- hydrolase: jaqu_RS19740 3'-nucleotidase: reductase: otsB lactonase: cofactor molybdenum cofactor an octanoyl-[acp] IV (rhodanese) [+ 2 isozymes] 3'-nucleotidase: jaqu_RS09860 jaqu_RS13375 D-glucopyranose bifunctional amidase: acetyltransferase: xsc formyltransferase: glutamyltransferase: ggt cytidylyltransferase: jaqu_RS11465 jaqu_RS00210 phbB α, α'-trehalose pcaD RS01890 demethylmenaquinol-8 vitamin B12-dependent jaqu_RS00965 (2S)-2- jaqu_RS00965 3-oxooctadecanoyl- 4-methyl-3- guanylyltransferase menaquinol-6 biosynthesis menaquinol-9 biosynthesis lipoyl(octanoyl) jaqu_RS13380 6-phosphate ADP-dependent jaqu_RS07415 thiosulfate polyphosphate jaqu_RS20075 jaqu_RS11210 (S)-malate α bis(tungstenpterin) GTP glucose-6- octanoate ribonucleotide reductase: 3'-UMP isopropylmalate uridine CoA 6- -mycolate oxoadipate RS12085 MobA: mobA transferase acyl carrier bifunctional jaqu_RS13385 kinase 2: ppk2 a (1->4)- cofactor phosphate NAD(P)H-hydrate sulfite jaqu_RS12185 thiamine LipB: lipB protein activation demethylmenaquinone acrylate acetyl phosphate an (S)-2- α D-glucopyranose molybdopterin- demethylmenaquinol-6 demethylmenaquinol-9 a [lipoyl-carrier protein] jaqu_RS13390 dehydratase/ acyl-CoA [+ 2 isozymes] an N-formyl- a CDP-2,3,4-saturated- a halide anion -D-glucan NADP methyltransferase/2- dehydrogenase: rhodanese domain- a tetrahydrofolate hypoglycin B L-cysteinylglycine hydroxycarboxylate CDP guanine diphosphate 6 NAD(P)H-hydrate synthetase: L-methionyl- bifunctional bifunctional N -octanoyl-L-lysine an apo acyl- molybdenum cofactor F0F1 ATP zwf phosphate diacylglycerol biosynthesis salvage III methoxy-6-polyprenyl- 6-phospho containing protein: met dinucleotide demethylmenaquinone guanylyltransferase epimerase: jaqu_RS03860 [initiator tRNA ] demethylmenaquinone lipoyl carrier protein 1,4-benzoquinol synthase: D-glucono- jaqu_RS00750 acetyltransferase: RS15495 biosynthesis thiamine methyltransferase/2- holo-ACP jaqu_RS05510 long chain NAD + methyltransferase/2- synthase: lipA MobA: mobA jaqu_RS04120 1,5-lactone jaqu_RS11370 guanylylprotein B: mobB synthase: methylase UbiE: ubiE octanoyl-CoA dimethylsulfoniopropanoate polyphosphate RS15290 methoxy-6-polyprenyl- thiamine methoxy-6-polyprenyl- jaqu_RS04125 a [glycine-cleavage an α-D- an (S)-2- a negatively a [protein]-L- D-ribulose molybdenum NAD kinase: a [lipoyl-carrier jaqu_RS08625 menaquinol-8 6-phosphogluconolactonase: NADPH an N-terminal L- an L-arginyl- (R)-S- maltotriose a holo [BryU acyl- geranylgeranyl 1,4-benzoquinol diphosphokinase: 1,4-benzoquinol 6 a holo acyl- bis(guanylyl jaqu_RS04130 thiocyanate sulfite acetyl-CoA degradation III (demethylation) a sulfurated [sulfur carrier] SAM complex H protein] galactoside asp ω 5-phosphate cys jaqu_RS11520 protein]-N -[(R)- aspartyl-[protein] [tRNA Arg ] halocarboxylate lactoylglutathione supercoiled DNA proline ( = 180) chlorophyll a cofactor jaqu_RS02875 methylase UbiE: ubiE pgl N 6 -octanoyl-L-lysine carrier protein] DNA peptidylprolyl ribulose- + methylase UbiE: ubiE dihydrolipoyl]-L-lysine carrier protein tungstenpterin) cofactor atpD geranylgeranyl NADP thiamine aspartate/ cystathionine menaquinol-9 jaqu_RS04140 D-gluconate DMSP ACP S- topoisomerase isomerase: diphosphate phosphate 3- menaquinol-6 diphosphate alpha- HAD family alpha tyrosine/aromatic 6-phosphate dimethylsulfoniopropionate hydroxyacylglutathione malonyltransferase: IV subunit B: parE jaqu_RS15575 reductase: epimerase: gamma-lyase: SecA ATP arginyltransferase: galactosidase: hydrolase: glucosidase: aminotransferase: NADP-dependent demethylase: jaqu_RS11025 lipoyl hydrolase: gloB fabD [+ 2 isozymes] [+ 3 isozymes] jaqu_RS15940 jaqu_RS10550 jaqu_RS03670 RS19650 3-(methylsulfanyl) jaqu_RS06355 jaqu_RS18680 jaqu_RS11465 jaqu_RS00210 a malonyl- jaqu_RS02390 D-xylulose phosphogluconate synthase: lipA a [protein]-L- pyruvate propanoate [BryU acyl- a relaxed DNA oxaloacetate ω chlorophyll a 5-phosphate dehydrogenase: gndA proline ( = 0) an N-terminal α-D- a non carrier protein] D-ribulose a [glycine-cleavage an (S)-2- D-glucopyranose maltose a tRNA Arg L-arginiyl-L- galactopyranose galactosylated a halide anion (R)-lactate glutathione 5'-deoxyadenosine 6 an unsulfurated 5-phosphate met complex H protein] N aspartyl-[protein] galactose acceptor hydroxycarboxylate RS14600 Secondary Metabolite Degradation -[(R)-lipoyl]-L-lysine [sulfur carrier] Aromatic Compound Degradation RS01305 Cell Structure Biosynthesis peptidoglycan biosynthesis I (meso-diaminopimelate containing) lipid IV biosynthesis (E. coli) A Kdo transfer to superpathway of β-D- D-galacturonate L-idonate D-ribose 5- α lipid IV I (E. coli) glucuronosides degradation a [pyruvate dehydrogenase E2 an N-terminal L- a single- D-threo-7,8- + propane-1,2,3- UDP-N-acetyl- -D-glucosamine a (3R)-3- A degradation phenylacetate an L-arginyl- FMN NAD(P)H H stachyose a holo [BryP acyl- (E)-caffeoyl-CoA an aldehyde a D-hexose degradation I a sulfurated [sulfur carrier] SAM 6 phosphate degradation I (aerobic) 4-sulfocatechol protein] N -octanoyl-L-lysine glutamyl-[protein] [tRNA Arg ] stranded RNA dihydroneopterin carrier protein] hypoxanthine tricarboxylate UDP-N-acetylglucosamine hydroxytetradecanoyl- UDP-N-acetyl- CMP-Kdo lipid IV (E. coli) a β-D-glucuronoside electron transfer FAD-dependent aldehyde ribose-5- RS10610 A aldehydo-D- L-idonate degradation glucokinase: 1-carboxyvinyltransferase: [acp] α-D-glucosamine ACP S- flavoprotein tricarballylate dehydrogenase phosphate galacturonate D-galactonate degradation coenzyme A phenylacetate alpha- xanthine jaqu_RS00180 RS00660 glucuronate L-idonate 5- dihydroneopterin malonyltransferase: isomerase murA arginyltransferase: polyribonucleotide flavin reductase: galactosidase: subunit alpha: dehydrogenase: dehydrogenase (NADP(+)): acyl-ACP--UDP-N- 3-deoxy-D-manno- isomerase: dehydrogenase: 4-sulfocatechol aldolase: fabD RpiA: rpiA lipoyl synthase: lipA jaqu_RS06355 nucleotidyltransferase: pnp jaqu_RS14985 jaqu_RS18680 jaqu_RS01075 xdhB xdhA TcuA: tcuA jaqu_RS09860 D-hexose 6- UDP-N-acetyl-α-D-glucosamine-enolpyruvate acetylglucosamine O- octulosonic acid uxaC D-galactonate jaqu_RS15445 protocatechuate jaqu_RS04655 a malonyl- D-ribulose 5-dehydro- phenylacetate-- hydrocaffeoyl-CoA 6,8- cis-aconitate a carboxylate phosphate acyltransferase: lpxA transferase: D-glucopyranuronate D-tagaturonate 3,4-dioxygenase: [BryP acyl- 5-phosphate UDP-N-acetylmuramate D-gluconate CoA ligase: paaF dihydroxypurine jaqu_RS07350 D-galactonate pcaG pcaH an N-terminal a single- α-D- carrier protein] RS00205 dehydrogenase: murB a nucleoside 6-(hydroxymethyl) + raffinose dehydratase: 3-sulfomuconate Arg glycolaldehyde FMNH NAD(P) glu ala UDP-3-O-[(3R)-3- a [pyruvate dehydrogenase a tRNA L-arginiyl-L- 2 galactopyranose 5'-deoxyadenosine diphosphate stranded RNA -7,8-dihydropterin SecD UDP-N-acetyl-α-D-muramate lipid IV biosynthesis (P. putida) hydroxymyristoyl]-N- α-Kdo-(2->6)- jaqu_RS13705 phenylacetyl-CoA met E2 protein] N 6 -lipoyl-L-lysine an unsulfurated [sulfur carrier] glutamyl-[protein] A α lipid IV (E. coli) glutamate racemase: murI acetyl- -D-glucosamine A 2-dehydro-3-deoxy- aldehydo-D-glucuronate D-altronate D-gluconate 2-phenylacetyl- amino acid racemase: UDP-N-acetylmuramate- a (3R)-3- UDP-3-O-acyl-N- D-galactonate hydroxydecanoyl- CoA -L-alanine ligase: UDP-N-acetyl- acetylglucosamine an N-terminal L- 527 GDP-α-D- jaqu_RS17365 peptidoglycan maturation (meso-diaminopimelate containing) glucuronate altronate 2-dehydro-3- gluconokinase: 5-amino-4- RNase R degradation an (R)-2- a guanine dimethyl(3- phosphoenol RS15765 jaqu_RS11940 [acp] α-D-glucosamine deacetylase: epoxidase: 4-sulfomuconolactone a 5-L-glutamyl- PRPP NADP + FMNH α-D-lyxopyranose 3-aminopropanal acryloyl-CoA α-Kdo-(2->4)-α-Kdo- isomerase: dehydratase: deoxygalactonokinase: jaqu_RS15455 an amino acid imidazolecarboxyamide substrate RNA halocarboxylate 2 alanyl-[S18 protein in 16S rRNA oxopropyl) mannose pyruvate jaqu_RS11900 paaA paaB [peptide] D-lyxose/D- GDP- RS13030 D-glt (2->6)-lipid IV (E. coli) lipid II (meso uxaC jaqu_RS15145 jaqu_RS18690 of 30S ribosome]ribosomal protein 16S rRNA betaine-aldehyde sulfanium crotonyl-CoA UDP-N-acetyl-α-D-muramoyl-L-alanine acyl-ACP--UDP-N- UDP-3-O-(3- A D-gluconate paaC paaJ mannose family betaine-aldehyde mannose 4,6- pyruvate diaminopimelate containing) 2-dehydro- 2-dehydro-3-deoxy- (guanine(527)-N(7) dehydrogenase: carboxylase/ acetylglucosamine O- D-fructuronate 6-phosphate 2-(1,2-epoxy-1,2- adenine HAD family S18-alanine N- dehydrogenase: hydroxymyristoyl) 3-deoxy-D- D-galactonate ribonuclease flavin reductase: )-methyltransferase sugar isomerase: reductase: dehydratase: kinase: pyk α monofunctional hydrolase: acetyltransferase: betB UDP-N-acetylmuramoyl- acyltransferase: lpxA - -D-glucosamine gluconate dihydrophenyl) gamma- phosphoribosyltransferase: R: rnr jaqu_RS14985 RsmG: rsmG jaqu_RS18985 betB ccrA gmd biosynthetic 6-phosphate 2-maleylacetate an N-terminal N-acetyl-rimI an N 7 - L-alanine--D-glutamate UDP-3-O-(3- acetyl-CoA glutamyltransferase: ggt jaqu_RS19990 jaqu_RS11465 β (R)-methylmalonyl- GDP-4-dehydro- pyruvate 2-dehydro-3- 527 D-xylulose -alanine DMSP RS15775 UDP-3-O-[(3R)-3- hydroxymyristoyl) peptidoglycan L-alanyl-[S18 protein methylguanine α-D-rhamnose ligase: jaqu_RS06550 deoxygluconokinase: 2-dehydro-3-deoxy-6- CoA RS15110 hydroxydecanoyl]- glucosamine N- transglycosylase: of 30S ribosome] in 16S rRNA D-mannonate jaqu_RS16435 phosphogalactonate D-sorbitol an α-(5-L- a diribonucleotide a nucleoside 5'- a (2R)-2- FMN NADPH H + meso-diaminopimelate UDP-N-acetyl-α-D-muramoyl- N-acetyl-α-D- acyltransferase: mtgA AICAR a halide anion aldolase: degradation I 2-oxepin-2(3H)- glutamyl)- a peptide monophosphate hydroxy fatty acid L-alanyl-D-glutamate glucosamine lpxD a nascent peptidoglycan mannonate KDGP UDP-3-O-acyl-N- jaqu_RS18695 ylideneacetyl-CoA 3-oxoadipate amino acid UDP-2-N,3-O-bis[(3R)- with (L-alanyl-γ-D- dehydratase: D-sorbitol UDP-N-acetylmuramoyl- D-ala acetylglucosamine 3-hydroxytetradecanoyl]- RS07890 glutamyl-meso-2,6- uxuA bifunctional D-glyceraldehyde L-iditol 2- L-alanyl-D-glutamate-- deacetylase: α -D-glucosamine diaminopimeloyl-D-alanyl- 4-hydroxy-2- pyruvate dehydrogenase: p-nitrophenyl-α-D- cytidine 2',3'-cyclic a guanine 966 RS18380 jaqu_RS11900 2-dehydro-3- 3-phosphate hydrogen selenide glycyl-glycine glutathione H + hydrogencarbonate FMN NADH H + sn-glycerol (R)-pantothenate a phenolic donor 2-chloroacetate propionamide D-ribofuranose 2, 6-diaminopimelate D-alanine--D-alanine UDP-2,3- D-alanine) pentapeptide oxoglutarate jaqu_RS12410 3-oxo-5,6- O-acetyl-L-serine galactopyranoside monophosphate in 16S rRNA UDP-3-O-(3- deoxy-D-gluconate bifunctional 2',3'- 3-phosphate ligase: jaqu_RS06575 ligase: jaqu_RS11925 diacylglucosamine aldolase/2- keto-D-fructose didehydrosuberyl- 16S rRNA type III heme haloacid hydroxydecanoyl) 2-dehydro-3- protocatechuate degradation cyclic-nucleotide 2'- L-glyceraldehyde ribokinase: diphosphatase D-alanyl-D-alanine D-alanyl-D-alanine dehydro-3-deoxy- CoA semialdehyde alpha- (guanine(966)-N(2) pantothenate peroxidase: dehalogenase amidase: UDP-N-acetyl-α-D-muramoyl-L-alanyl- -α-D-glucosamine deoxygluconokinase: II (ortho-cleavage pathway) carbonic phosphodiesterase/ 3-phosphate rbsK D-alanyl-D-alanine LpxI: jaqu_RS11245 carboxypeptidase/ carboxypeptidase/ phosphogluconate O-acetylhomoserine gamma- flavin reductase: )-methyltransferase kinase: type II: jaqu_RS07415 γ-D-glutamyl-meso-2,6-diaminopimelate UDP-3-O-(3- jaqu_RS16435 anhydrase: galactosidase: reductase: mgrA jaqu_RS07115 RS11335 D-alanyl-D-alanine- D-alanyl-D-alanine- a mature peptidoglycan with aminocarboxypropyltransferase/ glutamyltransferase: ggt jaqu_RS14985 3'-nucleotidase: RsmD: rsmD jaqu_RS01405 jaqu_RS13670 D-ribofuranose aldolase: eda jaqu_RS05865 jaqu_RS18680 an N 2 - L-glyceraldehyde a phenoxyl radical hydroxymyristoyl) lipid X endopeptidase: dacB endopeptidase: dacB (L-alanyl-γ-D-glutamyl-meso- protocatechuate cysteine synthase: jaqu_RS18435 jaqu_RS00965 (R)-4'- propanoate MalG β 966 glycolate 5-phosphate UDP-N-acetylmuramoyl- glucosamine N- KDGP -D-fructofuranose 3-oxo-5,6- protocatechuate methylguanine 3-phosphate phosphopantothenate of a phenolic donor lipid-A- 2,6-diaminopimeloyl-D-alanyl- pyruvate 3'-cmp tripeptide--D-alanyl- acyltransferase: a nascent peptidoglycan a nascent peptidoglycan didehydrosuberyl- 3,4-dioxygenase: γ-L-glutamyl- in 16S rRNA disaccharide D-alanine) pentapeptide L-cysteinylglycine D-galactopyranose 4-nitrophenol FMNH NAD + D- alanine ligase: lpxD CoA pcaG pcaH acetate CO H O 2 with (L-alanyl-γ-D-glutamyl- with D,D cross-links (meso- L-selenocysteine glycylglycine 2 2 synthase: lpxB bifunctional jaqu_RS06570 UDP-2-N-[(3R)-3- meso-2,6-diaminopimeloyl- diaminopimelate containing) 3-oxo-5,6- 3-carboxy-cis,cis-muconate RS11360 hydroxydodecanoyl]- lipid A disaccharide 4-hydroxy-2- dehydrosuberyl- α D-alanine) tetrapeptide F6P RS09950 UDP-N-acetyl- -D-muramoyl-L- 3-O-[(3R)-3- (E. coli) oxoglutarate CoA alanyl-γ-D-glutamyl-meso-2,6- di-trans,octa-cis-undecaprenyl phosphate aldolase/2- D-sedoheptulose S-(2-hydroxyacyl) 1402 46 (R)-3- (3Z)-hex- hydroxydecanoyl]- tetraacyldisaccharide 4'- L,D- L,D- thiolase: pcaF methanethiol O-acetyl-L- D-glyceraldehyde F6P N-acetylneuraminate a cytidine a guanine a monocarboxylic D-glucopyranose diaminopimeloyl-D-alanyl-D-alanine α a mature peptidoglycan dehydro-3-deoxy- L-cysteate malonyl-CoA -D-glucosamine kinase: jaqu_RS07345 transpeptidase: transpeptidase: trans-2,3- (2-carboxy-2,5-dihydro- homoserine 3-phosphate 7-phosphate glutathione in 16S rRNA in tRNA hydroxybutanoate acid amide 3-en-1-ol with D,D cross-links (meso- phosphogluconate 16S rRNA tRNA aspartate/ CHAT domain- xylose UDP-2,3- jaqu_RS03990 a nascent peptidoglycan jaqu_RS03990 a mature peptidoglycan dehydroadipyl-coA 5-oxofuran-2-yl)-acetate 3-hydroxybutyrate malonyl-CoA phospho-N-acetylmuramoyl- lipid IV (E. coli) diaminopimelate containing) aldolase: eda Entner-Doudoroff pathway I Carbohydrate Degradation (cytidine(1402)-2'-O) (guanosine(46)-N7) dehydrogenase: tyrosine/aromatic amidase: containing decarboxylase: isomerase: TatB diacylglucosamine A [+ 2 isozymes] with (L-alanyl-γ-D- [+ 2 isozymes] with (L-alanyl-γ-D-glutamyl- enoyl-CoA fructose-6- N-acetylneuraminate pentapeptide- transferase: lactose degradation II 4-carboxymuconolactone O-acetylhomoserine hydroxyacylglutathione -methyltransferase: -methyltransferase jaqu_RS07060 aminotransferase: jaqu_RS07415 protein: jaqu_RS03900 xylA diphosphatase glutamyl-meso-2,6- meso-2,6-diaminopimeloyl- hydratase: transketolase: tkt phosphate lyase: jaqu_RS16610 RS04155 jaqu_RS06565 D-glyceraldehyde decarboxylase: pcaC aminocarboxypropyltransferase/ hydrolase: gloB rsmI TrmB: trmB jaqu_RS02390 jaqu_RS20640 LpxI: jaqu_RS11245 a nascent peptidoglycan a nascent peptidoglycan D-glucopyranose a 2'-O- an N 7 - keto-D-fructose diaminopimelate) tripeptide D-alanine) tetrapeptide pyruvate jaqu_RS17800 cysteine synthase: jaqu_RS18435 aldolase: fsa acetoacetate a monocarboxylate (3Z)-hex-3- acetyl-CoA γ 3-phosphate 6-phosphate α-lactose (4,5-dihydro-5- 1402 46 3-sulfopyruvate undecaprenyldiphospho-N-acetylmuramoyl- with L,D cross links (meso- with (L-alanyl- -D-glutamyl- (3S)- methylcytidine methylguanine lipid X (P. putida) en-1-yl acetate γ diaminopimelate containing) meso-2,6-diaminopimeloyl- glucose-6- hydroxyadipyl- oxofuran-2-yl)-acetate N-acetyl-D- in 16S rRNA in tRNA L-alanyl- -D-glutamyl-meso-2,6- D-ribose 5- D-xylulose D-glyceraldehyde a 2-hydroxy pyruvate glycine) tetrapeptide phosphate acetate dihydroxyacetone glutathione mannosamine RS18920 diaminopimeloyl-D-alanyl-D-alanine lipid-A- a mature peptidoglycan CoA 3-oxoadipate enol- met phosphate 5-phosphate 3-phosphate carboxylate dehydrogenase: 3'-ketolactose UDP-N-acetylglucosamine- disaccharide with (L-alanyl-γ-D- lactonase: pcaD RS18165 zwf -N-acetylmuramyl- synthase: lpxB a mature peptidoglycan glutamyl-meso-2,6- beta- 6-phospho 3-oxoadipate (pentapeptide) lipid A with L,D cross-links (meso- diaminopimelate) tripeptide a mature peptidoglycan glucosidase: β 1402 37 D-glucono- α poly-3- N-acetyl- - a cytidine guanine 6-O-cis-keto- 7,8-dihydro- pyrophosphoryl- disaccharide diaminopimelate containing) with (L-alanyl-γ-D-glutamyl- jaqu_RS00185 3-oxoadipyl-CoA UDP-N-acetyl- -D-muramoyl- D-alanyl-D-alanine a β-D-galactoside p-nitrophenyl-β-D-galactoside chlorobactene chloroacetaldehyde 3-cyanopyridine 1,5-lactone γ hydroxyoctanoate neuraminate in 16S rRNA in tRNA Phe mycolyl-trehalose 8-oxoguanine undecaprenol N- (P. putida) meso-2,6-diaminopimeloyl- 3-keto-β-D- L-alanyl- -D-glutamyl-L-lysine RS17920 3-oxoadipyl- 16S rRNA tRNA carotenoid aldehyde nitrile hydratase 6-phosphate 8-oxoguanine acetylglucosamine tetraacyldisaccharide 4'- glycine) tetrapeptide 6-phosphogluconolactonase: galactose trehalose- CoA (cytosine(1402)-N(4) (guanosine(37)-N1) 1,2-hydratase: dehydrogenase subunit alpha: deaminase: RS01865 transferase: jaqu_RS11945 kinase: jaqu_RS07345 pgl UDP-N-acetylmuramoyl- beta-glucosidase: beta-glucosidase: N-acetylneuraminate phosphatase: thiolase: polyhydroxyalkanoate )-methyltransferase -methyltransferase (NADP(+)): jaqu_RS11255 jaqu_RS03365 jaqu_RS00185 lyase: jaqu_RS16610 jaqu_RS16025 otsB lipid IV D-gluconate tripeptide--D-alanyl- jaqu_RS00185 depolymerase: phaZ RsmH: rsmH TrmD: trmD jaqu_RS09860 lipid II (meso diaminopimelate containing) A pcaF an N 4 - an N 1 - (P. putida) 6-phosphate D- alanine ligase: 1-hydroxychlorobactene nicotinamide trehalose-cis-keto- urate methylcytidine 1402 methylguanine 37 2-chloroacetate phosphogluconate D-galactopyranose succinyl-CoA jaqu_RS06570 mono-mycolate superpathway of L- Amino Acid Biosynthesis N-acetyl-β-D- Phe RS12365 L-lysine biosynthesis I superpathway of L-serine D-galactopyranose a non galactosylated poly-3- poly-3- D-galactopyranose in 16S rRNA in tRNA L-histidine biosynthesis superpathway of branched chain amino acid biosynthesis L-arginine biosynthesis I (via L-ornithine) superpathway dehydratase: D-galactose degradation I (Leloir pathway) 4-nitrophenol mannosamine pyruvate isoleucine biosynthesis I and glycine biosynthesis I L-glutamate galactose acceptor RS01895 of L-threonine jaqu_RS06435 UDP-N-acetyl-α-D-muramoyl-L-alanyl- hydroxyoctanoate hydroxyoctanoate biosynthesis III β γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine oxaloacetate PRPP biosynthesis -D- pyruvate thr asp 3-phospho-D-glycerate aspartate/ glu KDGP galactopyranose aspartate phosphoglycerate 2-oxoglutarate oxaloacetate D-mannose degradation tyrosine/aromatic ATP acetolactate galactose kinase: glutamate aspartate/ an [HPr]- phosphoenol D-xylulose D-erythrose a long-linear adenine 1518 / a guanine 37 threonine/serine bifunctional dehydrogenase: mutarotase: D-glucopyranose maltopentaose α-D-glucopyranose a holo [PedN acyl- 1-hydroxyneurosporene a uridine in tRNA betanidin pyruvate RS12420 aminotransferase: phosphoribosyltransferase synthase: ilvN jaqu_RS03050 synthase large tyrosine/aromatic α-D-glucan 1519 L-homoserine dehydratase: jaqu_RS12600 bifunctional D-mannopyranose L-histidine pyruvate 5-phosphate 4-phosphate adenine in 16S rRNA carrier protein] in tRNA jaqu_RS02390 regulatory subunit: jaqu_RS05335 glutamate N- subunit: gltB jaqu_RS19040 16S rRNA tRNA tRNA RS15500 jaqu_RS13680 L-aspartyl-4-phosphate 3-phosphooxypyruvate aminotransferase: ammonia assimilation cycle III 4-hydroxy-2- 6-phosphate carotenoid heme pyruvate Secondary Metabolite Biosynthesis jaqu_RS16895 acetyltransferase/ α-D- mannose-1-phosphate (adenine(1518)-N(6)/ ACP S- (guanosine(37)-N1) dihydrouridine cystathionine asp (S)-2-acetolactate glutamate jaqu_RS02390 oxoglutarate phosphoenolpyruvate- 4-alpha- 4-alpha- 1,2-hydratase: peroxidase: carboxylase: [+ 2 isozymes] amino-acid phosphoserine galactopyranose guanylyltransferase/ adenine(1519)-N(6))- malonyltransferase: -methyltransferase synthase gamma-lyase: ATP aspartate- dehydrogenase: asp aldolase/2- -protein glucanotransferase: transketolase: tkt glucanotransferase: jaqu_RS16025 jaqu_RS07115 jaqu_RS06630 (2Z)-2-aminobut- acetyltransferase transaminase: ammonium mannose-6- dimethyltransferase fabD TrmD: trmD DusB: dusB jaqu_RS03670 methylerythritol phosphate pathway I methylerythritol phosphate pathway II aspartate phosphoribosyltransferase: ketol-acid jaqu_RS08840 malQ malQ a malonyl[PedN 1 1,1'-dihydroxy- semialdehyde ArgJ: argJ dehydro-3-deoxy- phosphotransferase: ptsP an N - a 5,6-dihydrouridine betanidin quinone oxaloacetate myo-inositol kinase: jaqu_RS16900 2-enoate jaqu_RS12605 phosphate isomerase: RsmA: rsmA 37 2-oxobutanoate RS02720 reductoisomerase: aspartate N 6 -dimethyladenine 1518 acyl-carrier methylguanine neurosporene dehydrogenase: glu glu phosphogluconate jaqu_RS09425 in tRNA D-glyceraldehyde D-glyceraldehyde biosynthesis jaqu_RS03050 ilvC N-acetyl-L- kinase: glutamate synthase glutamine α-D-galactose 6 1519 protein] in tRNA RS04965 pyruvate pyruvate 1-(5-phospho-β-D-ribosyl)-ATP jaqu_RS10730 2-oxoglutarate aldolase: eda α an [HPr protein]- D-glyceraldehyde a short 1,4- /N -dimethyladenine 3-phosphate 3-phosphate (2R)-2,3- glutamate O-phospho-L-serine large subunit: gltB UDP- -D-glucose F6P maltose maltotetraose F6P D-glucopyranose jaqu_RS03050 synthetase: 1-phosphate N π -phospho- pyruvate 3-phosphate α-D-glucan in 16S rRNA L-aspartyl- dihydroxy-3- aspartate- 6-phosphate phosphoribosyl-ATP glutamate jaqu_RS14140 D-glyceraldehyde 4-phosphate 2-iminobutanoate semialdehyde acetylglutamate L-aspartyl- L-histidine 1-deoxy-D- 1-deoxy-D- methylbutanoate phosphoserine dehydrogenase: [+ 3 isozymes] pyruvate diphosphatase: dehydrogenase: 4-phosphate 3-phosphate xylulose-5- xylulose-5- aspartate- dihydroxy-acid kinase: argB phosphatase SerB: serB jaqu_RS08840 melibiose degradation jaqu_RS06715 jaqu_RS05845 type I RS11705 phosphate phosphate semialdehyde dehydratase: DNA combined with a 2-(all-trans- (2R,3S)-3- Ins(3)P N-acetylglutamyl- aspartate- Asp-tRNA(Asn) glyceraldehyde- a proteinogenic leukotriene-C4 D-glucopyranose maltohexaose maltohexaose maltopentaose a holo [PedD acyl- 1-hydroxyneurosporene rhodopin n-butyronitrile γ-carotene 1-(5-phospho-β-D-ribosyl)-AMP ilvD L-aspartate 4- UDP- exogenous DNA to form polyprenyl)phenol isopropylmalate RS16875 synthase: synthase: dehydrogenase: phosphate ser semialdehyde /Glu-tRNA(Gln) melibiose amino acid carrier protein] 3-phosphate glucose 4- a recombinational junction jaqu_RS05925 jaqu_RS05925 inositol jaqu_RS10730 3-methyl-2- semialdehyde dehydrogenase: ammoniumamidotransferase gln Holliday junction carotenoid 3-isopropylmalate carotenoid nitrile hydratase carotenoid phosphoribosyl-AMP 2-oxobutanoate N-acetyl- serine dehydrogenase: epimerase ACP S- 2-polyprenylphenol monophosphatase: aspartate- oxobutanoate 4-hydroxy- jaqu_RS10730 subunit GatB: gatB L-homocysteine biosynthesis 4-alpha- resolvase RuvX: ruvX 1,2-hydratase: dehydrogenase: 1,2-hydratase: subunit alpha: 1,2-hydratase: cyclohydrolase: hisI gamma- hydroxymethyltransferase: gap GalE: galE alpha-galactosidase: alpha glucosidase: alpha glucosidase: malonyltransferase: 6-hydroxylase: ubiB 1-deoxy-D-xylulose 1-deoxy-D-xylulose jaqu_RS09280 semialdehyde acetolactate tetrahydrodipicolinate [+ 7 isozymes] glucanotransferase: crossover junction jaqu_RS16025 leuB jaqu_RS16025 jaqu_RS11255 jaqu_RS16025 β glutamyl- jaqu_RS11515 aspartate- jaqu_RS18680 gamma- jaqu_RS00210 jaqu_RS00210 fabD 5-phosphate 5-phosphate 1-(5-phospho- -D-ribosyl)- 2-isopropylmalate branched-chain malQ endodeoxyribonuclease a 3-(all-trans all-trans 4-methyl-2- 1'-hydroxy- inositol dehydrogenase: synthase: ilvN synthase: jaqu_RS02370 phosphate semialdehyde 13-DPG glutamyltransferase: ggt a malonyl- all-trans-lycopene butyramide 5-[(5-phosphoribosylamino) synthase: (2S,4S)-4- hydrogencarbonate L-homoserine -polyprenyl) γ RS10605 1-deoxy-D-xylulose- 1-deoxy-D-xylulose- monophosphatase: jaqu_RS05845 amino acid jaqu_RS05335 dehydrogenase: resolution of recombinationalRuvC: ruvC [PedD acyl- neurosporene oxopentanoate -carotene methylideneamino]imidazole- hydroxy-2,3,4,5- reductase: gly D-galactopyranose D-glucopyranose benzene-1,2-diol 5-phosphate 5-phosphate jaqu_RS15560 jaqu_RS18755 aminotransferase: α junction formation carrier protein] L-aspartate 4- (S)-2-aceto-2- carbamoyl- argC jaqu_RS05845 glu phosphoglycerate -D- maltopentaose maltose D-glucopyranose maltopentaose D-glucopyranose maltotetraose 4-carboxamide 2-isopropylmalate jaqu_RS05895 tetrahydrodipicolinate UDP-α-D- an α-(γ-L-glutamyl) reductoisomerase: reductoisomerase: semialdehyde hydroxybutanoate phosphate N-acetyl-L- kinase: glucopyranose leukotriene-D4 of two intact strands myo-inositol 1-(5-phosphoribosyl)-5- synthase: 4-hydroxy- L-aspartate 4- galactose -L-amino acid jaqu_RS11215 jaqu_RS11215 branched-chain ketol-acid synthase glutamate 5- jaqu_RS05175 1-phosphate homoserine [(5- phosphoribosylamino) jaqu_RS13735 tetrahydrodipicolinate semialdehyde amino acid reductoisomerase: large semialdehyde 3-phospho- dehydrogenase: methylideneamino]imidazole-4- reductase: O-acetyl-L- phosphomannomutase/ MEP MEP aminotransferase: ilvC N-acetylornithine homoserine RS16920 jaqu_RS03170 carboxamide isomerase: hisA jaqu_RS13520 subunit: carB homoserine hydrogen sulfide D-glycerate (9Z,12Z,15Z,18Z,21Z)-3- 5-guanidino-2- a double (2S)-2- jaqu_RS02780 aminotransferase: dehydrogenase: phosphoglucomutase: a proteinogenic glutathione D-glucopyranose a maltodextrin maltotriose a glucan maltoheptaose hydantoin rhodopin baicalein coniferyl alcohol acetamide (R)-2,3-dihydroxy- oxotetracosapentaenoyl-CoA oxopentanoate stranded DNA 2-C-methyl-D- 2-C-methyl-D- homoserine phosphoribulosylformimino- isopropylmalate (S)-2,3,4,5- glutamine- jaqu_RS08900 jaqu_RS03170 jaqu_RS12320 D-xylose amino acid 3-methylpentanoate 5-guanidino-2- DNA/RNA carotenoid heme heme erythritol 4-phosphate erythritol 4-phosphate dehydrogenase: AICAR-phosphate tetrahydrodipicolinate hydrolyzing homoserine O-acetylhomoserine degradation I acetoacetyl-CoA dihydropyrimidinase: amidase: 3-isopropylmalate dihydroxy-acid N-acetyl-L- D-glucopyranose oxopentanoate cytidylyltransferase: cytidylyltransferase: jaqu_RS11505 val carbamoyl- aminocarboxypropyltransferase/ 4-alpha- 4-alpha- nuclease 1,2-hydratase: peroxidase: peroxidase: dehydratase 2,3,4,5- dehydrogenase: 2-phospho- 6-phosphate alpha glucosidase: reductase: phbB hydA decarboxylase: jaqu_RS07415 ispD ispD dehydratase: phosphate ornithine D-xylose glucanotransferase: glucanotransferase: SfsA: sfsA jaqu_RS16025 jaqu_RS07115 jaqu_RS07115 imidazole glycerol small subunit: leuD tetrahydropyridine- jaqu_RS11505 cysteine synthase: jaqu_RS18435 D-glycerate gamma- jaqu_RS00210 jaqu_RS02020 4-(cytidine 5'- 4-(cytidine 5'- L-homoserine ilvD synthase acetylornithine xylose malQ malQ (3R,9Z,12Z,15Z,18Z,21Z)-3- 1,1'-dihydroxy-1,1',2,2'- 6,7- coniferyl RS11175 phosphate [+ 2 isozymes] 2,6-dicarboxylate N- glutamyltransferase: ggt N-carbamoylglycine a 5'-phosphooligonucleotide acetate diphospho)-2-C- diphospho)-2-C- (3S)-3-methyl-2- small deacetylase: L-tryptophan biosynthesis phosphopyruvate isomerase: hydroxytetracosapentaenoyl-CoA 4-guanidinobutyraldehyde tetrahydrolycopene dehydrobaicalein alcohol radical synthase: hisH hisF succinyltransferase: L-homoserine methyl-D-erythritol methyl-D-erythritol oxopentanoate subunit: carA argE L-homocysteine hydratase: eno xylA 2-isopropylmaleate dapD L-arginine biosynthesis II (acetyl cycle) D-glucopyranose maltohexaose 4-(cytidine 5'- 4-(cytidine 5'- α γ a maltodextrin maltose a glucan D-glucopyranose branched-chain phosphoenol D-xylulose an -( -L-glutamyl) diphospho)- diphospho)- AICAR D-erythro-1-(imidazol-4- 3-isopropylmalate N-succinyl-2-amino- carbamoyl gln L-cysteinylglycine amino acid L-ornithine chorismate pyruvate -L-amino acid 2-C-methyl-D- 2-C-methyl-D- O-phospho- yl)-glycerol 3-phosphate dehydratase 6-ketopimelate phosphate N-acetylglutamyl-phosphate xylulokinase: aminotransferase: pyruvate RseP erythritol kinase: erythritol kinase: small subunit: leuD N-succinyldiaminopimelate xylB L-homoserine imidazoleglycerol- jaqu_RS05895 O-phospho- kinase: pyk an (S-diacyl-sn- a plant soluble XLLG xyloglucan 1915 jaqu_RS08005 jaqu_RS08005 phosphate [+ 2 isozymes] aminotransferase: ornithine anthranilate D-xylulose an L-1- D-glucopyranose a pseudouridine (9Z,12Z,15Z,18Z)-3- threonine L-homoserine glyceryl)-L-cysteinyl- heteroglycan 2-decaprenylphenol a [protein] Ser/Thr 2-hydroxyisobutyramide reduced riboflavin propionitrile hispidin citrate 2-phospho-4-(cytidine 2-phospho-4-(cytidine branched-chain jaqu_RS08900 carbamoyltransferase: synthase component 5-phosphate phosphatidylethanolamine oligosaccharide in 23S rRNA oxotetracosatetraenoyl-CoA synthase: dehydratase (2R,3S)-3- threonine pyruvate [apolipoprotein] 5'-diphospho)-2-C- 5'-diphospho)-2-C- amino acid argF N-acetyl- I: jaqu_RS05370 23S rRNA serine/threonine nitrile hydratase heme aconitate jaqu_RS18905 HisB: hisB isopropylmalate N-succinyl-L,L-2,6- acetoacetyl-CoA 2-polyprenylphenol amidase: flavin reductase: methyl-D-erythritol methyl-D-erythritol aminotransferase: synthase: (pseudouridine(1915)- protein kinase: diaminopimelate gamma-glutamyl- C1 Compound Utilization and Assimilation 4-alpha- beta-glucosidase: subunit alpha: peroxidase: hydratase 2-C-methyl-D- 2-C-methyl-D- 3-(imidazol-4-yl)-2- 3-isopropylmalate jaqu_RS02780 jaqu_RS18905 N(3))-methyltransferase reductase: phbB 6-hydroxylase: ubiB jaqu_RS07415 jaqu_RS14985 thr phosphate anthranilate apolipoprotein N- glucanotransferase: jaqu_RS14765 jaqu_RS11255 jaqu_RS07115 AcnA: acnA RS07895 oxopropyl phosphate dehydrogenase: succinyl- PRPP jaqu_RS00185 RlmH: rlmH erythritol 2,4- erythritol 2,4- asp L-citrulline reductase: argC acyltransferase: lnt malQ an N 3 - (3R,9Z,12Z,15Z,18Z)-3- 3-(all-trans-decaprenyl) a [protein] (L-serine/L- 2-hydroxy-2- diaminopimelate acetylglutamate thr formate assimilation into 5,10- riboflavin propionamide 3,14'-bihispidinyl D-threo-isocitrate cyclodiphosphate cyclodiphosphate histidinol-phosphate leuB ile formate oxidation to CO 1915 threonine/serine desuccinylase: kinase: argB methylenetetrahydrofolate formaldehyde 2 methylpseudouridine hydroxytetracosatetraenoyl-CoA benzene-1,2-diol threonine) phosphate methylpropanoate synthase: ispF synthase: ispF transaminase: (2S)-2-isopropyl- gln N-acetyl-L-glutamate anthranilate oxidation II an N-acyl-(S-diacyl- a plant soluble XXXG xyloglucan in 23S rRNA dehydratase: dapE argininosuccinate glu N-acetyl-L-glutamate a 2-acyl-1-lyso- maltose D-galactopyranose jaqu_RS18720 3-oxosuccinate 5-semialdehyde phosphoribosyltransferase: trpD formate (glutathione-dependent) formate sn-glyceryl)-L- heteroglycan oligosaccharide 2-C-methyl-D-erythritol- 2-C-methyl-D-erythritol- jaqu_RS13680 synthase: bifunctional phosphatidylethanolamine carbamoyl- N-acetylornithine formate-- formate dehydrogenase cysteinyl-[lipoprotein] 2,4-cyclodiphosphate 2,4-cyclodiphosphate [+ 2 isozymes] L-histidinol phosphate L,L-diaminopimelate jaqu_RS06025 glutamate N- formaldehyde RS09470 phosphate aminotransferase: N-(5-phosphoribosyl)-anthranilate tetrahydrofolate subunit alpha: fdhF flavodoxin- flavodoxin- (2Z)-2-aminobut- acetyltransferase/ bifunctional superpathway of L-cysteine synthase large jaqu_RS08900 Amine and Polyamine Degradation ligase: formate dehydrogenase dependent dependent 2-enoate histidinol- 4-methyl-2- diaminopimelate L-arginino- amino-acid glutamate N- a [protein]-N 6 - XLXG xyloglucan a 5' triphospho- biosynthesis (mammalian) subunit: carB L-proline phosphoribosylanthranilate jaqu_RS14460 S-(hydroxymethyl) subunit gamma: NAD + D-glucopyranose maltotetraose uroporphyrinogen-III 2-nonaprenylphenol 4-hydroxybenzoate 4-guanidinobutyramide an aliphatic nitrile L-iditol L-idonate 7,8-dihydropterin (E)-4-hydroxy- (E)-4-hydroxy- phosphatase: hisN oxopentanoate epimerase: dapF succinate acetyltransferase acetyltransferase/ an N 10 - acetyl-L-lysine oligosaccharide isomerase: jaqu_RS18560 [mRNA] ArgJ: argJ glutamine- amino-acid biosynthesis I glycine betaine degradation I glutathione jaqu_RS12765 uroporphyrinogen-III C- L-iditol 2- L-idonate 5- 3-methylbut- 3-methylbut- branched-chain argininosuccinate allantoin degradation formyltetrahydrofolate RNA 4-hydroxybenzoate nitrile hydratase guanine met (from L-glutamate) 1-(2-carboxyphenylamino)-1- CO methyltransferase: cobA 2-polyprenylphenol amidase: 2-enyl- 2-enyl- alanine histidinol amino acid meso-diaminopimelate lyase: hydrolyzing acetyltransferase allantoin degradation bifunctional S-(hydroxymethyl) 2 4-alpha- pyrophosphohydrolase: 3-monooxygenase: subunit alpha: dehydrogenase: dehydrogenase: deaminase: to glyoxylate III NAD-dependent beta-glucosidase: 6-hydroxylase: ubiB jaqu_RS07415 UrtB diphosphate diphosphate racemization aminotransferase: jaqu_RS21350 carbamoyl- ArgJ: argJ deoxy-D-ribulose 5-phosphate to glyoxylate I glutathione glucanotransferase: uroporphyrinogen-III C- jaqu_RS09600 pobA jaqu_RS11255 jaqu_RS12410 jaqu_RS15445 guaD 2-iminobutanoate histidinol methionine glu glycine betaine methylenetetrahydrofolate deacylase: jaqu_RS00185 synthase: ispG synthase: ispG jaqu_RS05895 diaminopimelate phosphate indole-3-glycerol dehydrogenase/ malQ methyltransferase: cobA a 5'-phospho- a primary 5-dehydro- 7,8- dehydrogenase: hisD adenosyltransferase: argininosuccinate N-acetyl-L-ornithine glutamate betaine--homocysteine (S)-(+)-allantoin dehydrogenase/ jaqu_RS13345 3-(all-trans-nonaprenyl) keto-L-sorbose (E)-4-hydroxy-3- (E)-4-hydroxy-3- synthase small phosphate class III alcohol precorrin-2 protocatechuate 4-guanidinobutanoate D-gluconate ala branched-chain jaqu_RS08575 decarboxylase: lysA lyase: argH 5-kinase: S-methyltransferase: bmt allantoinase (S)-(+)-allantoin methenyltetrahydrofolate [mRNA] benzene-1,2-diol aliphatic amide dihydrolumazine methylbut-2-en- methylbut-2-en- alanine histidinol subunit: carA synthase TrpC: trpC dehydrogenase: XXXG xyloglucan amino acid γ jaqu_RS10215 PuuE: puuE allantoinase cyclohydrolase FolD: folD 2''-O-acetyl- D-galactopyranose 1-yl diphosphate 1-yl diphosphate dehydrogenase: hisD -L-glutamyl N,N-dimethylglycine jaqu_RS15645 maltose maltotriose oligosaccharide racemase: alr aminotransferase: SAM lys arg L-ornithine (1S,2R)-1-C-(indol-3- allantoate PuuE: puuE a 5,10- ADP-ribose nicotinamide a [protein]-L-lysine 4-hydroxy- 4-hydroxy- 2-oxobutanoate carbamoyl phosphate 5-phosphate TatC amino acid histidinal jaqu_RS02780 yl)glycerol 3-phosphate allantoate methenyltetrahydrofolate S-formylglutathione 3-methylbut- 3-methylbut- racemase: glutamate-5- acetolactate tryptophan synthase bifunctional 2-enyl 2-enyl jaqu_RS17365 histidinol semialdehyde synthase: ilvN leu methylenetetrahydrofolate 2,5-diamino-6-(5- 2-amino-6-[1-hydroxyethyl]- XXLG xyloglucan 2-hydroxychromene- (3R,7Z,10Z,13Z,16Z)-3- a uridine 55 (2S)- CTP diphosphate diphosphate dehydrogenase: hisD subunit beta: trpB uroporphyrinogen-I 5,6-dihydrouracil maltose L-idonate jaqu_RS05335 D-ala dehydrogenase: phospho-D-ribitylamino) oligosaccharide reductase: reductase: tryptophan synthase dehydrogenase/ 7-methyl-7,8-dihydropterin 2-carboxylate hydroxydocosatetraenoyl-CoA in tRNA ethylmalonyl-CoA 2'-deoxycytidine 4-hydroxy- 4-hydroxy- histidinol jaqu_RS10210 sarcosine (S)-ureidoglycine pyrimidin-4(3H)-one 2-hydroxychromene- alpha L-idonate 5- ispH ispH (S)-2-aceto-2- SAH L-phenylalanine L-cysteine biosynthesis I L-alanine methenyltetrahydrofolate bifunctional 2-amino-4-hydroxy-6- uroporphyrinogen tRNA NAD-dependent methylmalonyl- 5'-triphosphate 3-methylbut- 3-methylbut- dehydrogenase: hisD subunit alpha: (S)-ureidoglycolate formate 2-carboxylate acetoacetyl-CoA hydroxybutanoate biosynthesis I ornithine L-glutamate-5- cyclohydrolase FolD: folD diaminohydroxyphosphoribosylaminopyrimidine hydroxymethyldihydropteridine decarboxylase: pseudouridine(55) dihydropyrimidine CoA glucosidase: dehydrogenase: RS15015 2-enyl 2-enyl biosynthesis III jaqu_RS03975 (S)-ureidoglycine beta-glucosidase: reductase: phbB deaminase: IPP IPP carbamoyltransferase: semialdehyde ureidoglycolate deaminase/5-amino-6-(5-phosphoribosylamino) diphosphokinase: folK isomerase: jaqu_RS09090 synthase TruB: truB dehydrogenase epimerase: mce jaqu_RS00210 jaqu_RS15445 diphosphate diphosphate ketol-acid his adenosylhomocysteinase: aminohydrolase: a 5,10- jaqu_RS00185 jaqu_RS02410 ser argF ser [1-(2-amino-7-methyl-4-oxo- jaqu_RS01555 55 reductoisomerase: chorismate indole lyase: uracil reductase RibD: ribD (7Z,10Z,13Z,16Z)-3- a pseudouridine subunit PreA: preA (2R)- D-glucopyranose 5-dehydro- reductase: reductase: glycine jaqu_RS14290 cys jaqu_RS15440 methylenetetrahydrofolate 7,8-dihydro-3H-pteridin- trans-O- coproporphyrinogen I UTP chorismate jaqu_RS13870 5-amino-6-(5-phospho- oxodocosatetraenoyl-CoA in tRNA uracil ethylmalonyl-CoA D-gluconate ispH ispH ilvC biosynthesis IV uracil degradation serine O- cysteine hydroxybenzylidenepyruvate isopentenyl- isopentenyl- mutase: gly (S)-ureidoglycolate D-ribitylamino)uracil 6-yl)]ethyl diphosphate XXXG xyloglucan (R)-2,3-dihydroxy- I (reductive) L-homocysteine ser acetyltransferase: desulfurase: tryptophan synthase D-galactopyranose diphosphate diphosphate jaqu_RS14455 (S)-1-pyrroline- glyoxylate oligosaccharide RS17935 delta- delta- 3-methylpentanoate cysE jaqu_RS01700 subunit beta: trpB serine ureidoglycolate thr uracil chorismate L-glutamate 5-carboxylate dihydroxy-acid hydroxymethyltransferase: lyase: isomerase: idi isomerase: idi low specificity cysteine biosynthesis II pyrroline-5- tryptophan synthase Alcohol Degradation dehydratase: mutase: O-acetyl-L-serine 4a-hydroxy-N 10 - 3-phenyl-2- 2-hydroxy-2- 5,6- 6,8- dCTP L-threonine hydrogen sulfide desulfurase: L-citrulline subunit alpha: jaqu_RS11515 jaqu_RS13870 phosphatidylglycerolphosphate protochlorophyllide a 2-heptaprenylphenol an α-limit dextrin 5-methylcytosine 5-fluorocytosine ilvD jaqu_RS18115 carboxylate formyltetrahydrofolate oxopropanoate methylpropanenitrile dihydrothymine dihydroxypurine aldolase: jaqu_RS01735 2-oxoglutarate jaqu_RS03975 (1-oleoyl, 2-palmitoyl) 2'-deoxycytidine DMAPP DMAPP 5,6-dihydrouracil prephenate reductase: glyoxylate glycerol and glycerophosphodiester degradation 4-alpha- nitrile hydratase NAD-dependent xanthine cytosine cytosine (3S)-3-methyl-2- ala argininosuccinate glutamate ser ethanol glycerol degradation V ferredoxin:protochlorophyllide 5'-triphosphate jaqu_RS01995 jaqu_RS19010 urea phosphatidylglycerophosphatase 4a-hydroxytetrahydrobiopterin 4-hydroxyphenylpyruvate 2-polyprenylphenol glucanotransferase: dihydropyrimidine oxopentanoate gly L-cystathionine prephenate cysteine synthase synthase: dehydrogenase: degradation II reductase (ATP-dependent): subunit alpha: dehydrogenase: deaminase: deaminase: deaminase: RS19380 dihydropyrimidinase: degradation II glycerol dehydratase: jaqu_RS14170 dioxygenase: hppD 6-hydroxylase: ubiB dehydrogenase A: jaqu_RS12355 jaqu_RS06025 trp threonine/serine A: jaqu_RS00245 jaqu_RS15905 jaqu_RS15910 malQ jaqu_RS11255 xdhB xdhA jaqu_RS15725 jaqu_RS15725 jaqu_RS02410 branched-chain hydA dehydratase: jaqu_RS08840 pro glycerol a α-limit dextrin subunit PreA: preA cystathionine gamma- O-acetylhomoserine dehydratase: jaqu_RS13680 ethanol 1-oleoyl-2-palmitoyl- an N 10 -formyl- (2-hydroxyphenyl) 3-(all-trans-heptaprenyl) thymine 5-fluorouracil amino acid jaqu_RS09135 glu urea chlorophyllide a with short branches 2-hydroxyisobutyramide thymine urate dUTP lyase: jaqu_RS03670 aminocarboxypropyltransferase/ L-arginino-succinate threonine/serine alcohol 7,8-dihydrofolate acetate benzene-1,2-diol aminotransferase: 3-ureidopropanoate 3-phenyl-2- L-ornithine degradation choline degradation I urease: ureC phosphatidylglycerol cysteine synthase: jaqu_RS18435 a glycerophosphodiester dehydrogenase jaqu_RS05895 oxopropanoate I (L-proline biosynthesis) dehydratase: jaqu_RS19690 jaqu_RS10400 argininosuccinate AdhP: adhP dihydroxyacetone cys lyase: jaqu_RS10410 glycerol RS07405 branched-chain aspartate/ 2-aminoprop-2-enoate choline acetaldehyde ammonium glycerophosphodiester dihydroxyacetone amino acid tyrosine/aromatic cys jaqu_RS21350 L-ornithine choline phosphodiesterase: kinase subunit aminotransferase: aminotransferase: argininosuccinate ornithine dehydrogenase: glycerol kinase β-alanine jaqu_RS10060 DhaK: dhaK jaqu_RS02780 jaqu_RS02390 lyase: argH cyclodeaminase: betA GlpK: glpK jaqu_RS07240 betaine aldehyde DHAP ile phe arg pro 2-iminopropanoate acetate RS02730 betaine-aldehyde sn-glycerol 3-phosphate dehydrogenase: acetate--CoA betB glycerol-3-phosphate ligase: acs dehydrogenase: glpD pyruvate glycine betaine acetyl-CoA DHAP RS11710 a reduced a reduced plastocyanin plastocyanin an oxidized an oxidized plastocyanin phosphonate plastocyanin an (aminoalkyl)phosphonate molybdate D-ribopyranose ammonium an alkylphosphonate

cytochrome- cytochrome ModC RS07570 RS15980 RS09560 OppB RS05215 RS15760 RS05975 RS18660 RS12745 SecE RS20025 RS15150 RS07165 RS16480 RS06770 PhnE RS12010 RS03720 RS16210 RS01450 RS05715 RS12265 RS01665 RS10230 TolQ RS01920 c oxidase, PhnC RS16155 RS07825 TolR RS13615 RS01670 RS14210 RS03005 RS02045 FtsA RS16545 RS00850 RS16465 RS04355 RS08610 RS08725 MotA RS01860 RS15480 CcmE RS14190 TrkA RS07990 RS17820 RS04900 ChoW RS02745 c oxidase cbb3-type phosphonate D-ribopyranose molybdate an (aminoalkyl)phosphonate ammonium O an alkylphosphonate 2 O H O 2 2 H O 2 This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.