Database and File System on Embedded Devices
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Copy on Write Based File Systems Performance Analysis and Implementation
Copy On Write Based File Systems Performance Analysis And Implementation Sakis Kasampalis Kongens Lyngby 2010 IMM-MSC-2010-63 Technical University of Denmark Department Of Informatics Building 321, DK-2800 Kongens Lyngby, Denmark Phone +45 45253351, Fax +45 45882673 [email protected] www.imm.dtu.dk Abstract In this work I am focusing on Copy On Write based file systems. Copy On Write is used on modern file systems for providing (1) metadata and data consistency using transactional semantics, (2) cheap and instant backups using snapshots and clones. This thesis is divided into two main parts. The first part focuses on the design and performance of Copy On Write based file systems. Recent efforts aiming at creating a Copy On Write based file system are ZFS, Btrfs, ext3cow, Hammer, and LLFS. My work focuses only on ZFS and Btrfs, since they support the most advanced features. The main goals of ZFS and Btrfs are to offer a scalable, fault tolerant, and easy to administrate file system. I evaluate the performance and scalability of ZFS and Btrfs. The evaluation includes studying their design and testing their performance and scalability against a set of recommended file system benchmarks. Most computers are already based on multi-core and multiple processor architec- tures. Because of that, the need for using concurrent programming models has increased. Transactions can be very helpful for supporting concurrent program- ming models, which ensure that system updates are consistent. Unfortunately, the majority of operating systems and file systems either do not support trans- actions at all, or they simply do not expose them to the users. -
Development of a Verified Flash File System ⋆
Development of a Verified Flash File System ? Gerhard Schellhorn, Gidon Ernst, J¨orgPf¨ahler,Dominik Haneberg, and Wolfgang Reif Institute for Software & Systems Engineering University of Augsburg, Germany fschellhorn,ernst,joerg.pfaehler,haneberg,reifg @informatik.uni-augsburg.de Abstract. This paper gives an overview over the development of a for- mally verified file system for flash memory. We describe our approach that is based on Abstract State Machines and incremental modular re- finement. Some of the important intermediate levels and the features they introduce are given. We report on the verification challenges addressed so far, and point to open problems and future work. We furthermore draw preliminary conclusions on the methodology and the required tool support. 1 Introduction Flaws in the design and implementation of file systems already lead to serious problems in mission-critical systems. A prominent example is the Mars Explo- ration Rover Spirit [34] that got stuck in a reset cycle. In 2013, the Mars Rover Curiosity also had a bug in its file system implementation, that triggered an au- tomatic switch to safe mode. The first incident prompted a proposal to formally verify a file system for flash memory [24,18] as a pilot project for Hoare's Grand Challenge [22]. We are developing a verified flash file system (FFS). This paper reports on our progress and discusses some of the aspects of the project. We describe parts of the design, the formal models, and proofs, pointing out challenges and solutions. The main characteristic of flash memory that guides the design is that data cannot be overwritten in place, instead space can only be reused by erasing whole blocks. -
Membrane: Operating System Support for Restartable File Systems Swaminathan Sundararaman, Sriram Subramanian, Abhishek Rajimwale, Andrea C
Membrane: Operating System Support for Restartable File Systems Swaminathan Sundararaman, Sriram Subramanian, Abhishek Rajimwale, Andrea C. Arpaci-Dusseau, Remzi H. Arpaci-Dusseau, Michael M. Swift Computer Sciences Department, University of Wisconsin, Madison Abstract and most complex code bases in the kernel. Further, We introduce Membrane, a set of changes to the oper- file systems are still under active development, and new ating system to support restartable file systems. Mem- ones are introduced quite frequently. For example, Linux brane allows an operating system to tolerate a broad has many established file systems, including ext2 [34], class of file system failures and does so while remain- ext3 [35], reiserfs [27], and still there is great interest in ing transparent to running applications; upon failure, the next-generation file systems such as Linux ext4 and btrfs. file system restarts, its state is restored, and pending ap- Thus, file systems are large, complex, and under develop- plication requests are serviced as if no failure had oc- ment, the perfect storm for numerous bugs to arise. curred. Membrane provides transparent recovery through Because of the likely presence of flaws in their imple- a lightweight logging and checkpoint infrastructure, and mentation, it is critical to consider how to recover from includes novel techniques to improve performance and file system crashes as well. Unfortunately, we cannot di- correctness of its fault-anticipation and recovery machin- rectly apply previous work from the device-driver litera- ery. We tested Membrane with ext2, ext3, and VFAT. ture to improving file-system fault recovery. File systems, Through experimentation, we show that Membrane in- unlike device drivers, are extremely stateful, as they man- duces little performance overhead and can tolerate a wide age vast amounts of both in-memory and persistent data; range of file system crashes. -
CS 5600 Computer Systems
CS 5600 Computer Systems Lecture 10: File Systems What are We Doing Today? • Last week we talked extensively about hard drives and SSDs – How they work – Performance characterisEcs • This week is all about managing storage – Disks/SSDs offer a blank slate of empty blocks – How do we store files on these devices, and keep track of them? – How do we maintain high performance? – How do we maintain consistency in the face of random crashes? 2 • ParEEons and MounEng • Basics (FAT) • inodes and Blocks (ext) • Block Groups (ext2) • Journaling (ext3) • Extents and B-Trees (ext4) • Log-based File Systems 3 Building the Root File System • One of the first tasks of an OS during bootup is to build the root file system 1. Locate all bootable media – Internal and external hard disks – SSDs – Floppy disks, CDs, DVDs, USB scks 2. Locate all the parEEons on each media – Read MBR(s), extended parEEon tables, etc. 3. Mount one or more parEEons – Makes the file system(s) available for access 4 The Master Boot Record Address Size Descripon Hex Dec. (Bytes) Includes the starEng 0x000 0 Bootstrap code area 446 LBA and length of 0x1BE 446 ParEEon Entry #1 16 the parEEon 0x1CE 462 ParEEon Entry #2 16 0x1DE 478 ParEEon Entry #3 16 0x1EE 494 ParEEon Entry #4 16 0x1FE 510 Magic Number 2 Total: 512 ParEEon 1 ParEEon 2 ParEEon 3 ParEEon 4 MBR (ext3) (swap) (NTFS) (FAT32) Disk 1 ParEEon 1 MBR (NTFS) 5 Disk 2 Extended ParEEons • In some cases, you may want >4 parEEons • Modern OSes support extended parEEons Logical Logical ParEEon 1 ParEEon 2 Ext. -
Ext4 File System and Crash Consistency
1 Ext4 file system and crash consistency Changwoo Min 2 Summary of last lectures • Tools: building, exploring, and debugging Linux kernel • Core kernel infrastructure • Process management & scheduling • Interrupt & interrupt handler • Kernel synchronization • Memory management • Virtual file system • Page cache and page fault 3 Today: ext4 file system and crash consistency • File system in Linux kernel • Design considerations of a file system • History of file system • On-disk structure of Ext4 • File operations • Crash consistency 4 File system in Linux kernel User space application (ex: cp) User-space Syscalls: open, read, write, etc. Kernel-space VFS: Virtual File System Filesystems ext4 FAT32 JFFS2 Block layer Hardware Embedded Hard disk USB drive flash 5 What is a file system fundamentally? int main(int argc, char *argv[]) { int fd; char buffer[4096]; struct stat_buf; DIR *dir; struct dirent *entry; /* 1. Path name -> inode mapping */ fd = open("/home/lkp/hello.c" , O_RDONLY); /* 2. File offset -> disk block address mapping */ pread(fd, buffer, sizeof(buffer), 0); /* 3. File meta data operation */ fstat(fd, &stat_buf); printf("file size = %d\n", stat_buf.st_size); /* 4. Directory operation */ dir = opendir("/home"); entry = readdir(dir); printf("dir = %s\n", entry->d_name); return 0; } 6 Why do we care EXT4 file system? • Most widely-deployed file system • Default file system of major Linux distributions • File system used in Google data center • Default file system of Android kernel • Follows the traditional file system design 7 History of file system design 8 UFS (Unix File System) • The original UNIX file system • Design by Dennis Ritche and Ken Thompson (1974) • The first Linux file system (ext) and Minix FS has a similar layout 9 UFS (Unix File System) • Performance problem of UFS (and the first Linux file system) • Especially, long seek time between an inode and data block 10 FFS (Fast File System) • The file system of BSD UNIX • Designed by Marshall Kirk McKusick, et al. -
Improving Journaling File System Performance in Virtualization
SOFTWARE – PRACTICE AND EXPERIENCE Softw. Pract. Exper. 2012; 42:303–330 Published online 30 March 2011 in Wiley Online Library (wileyonlinelibrary.com). DOI: 10.1002/spe.1069 VM aware journaling: improving journaling file system performance in virtualization environments Ting-Chang Huang1 and Da-Wei Chang2,∗,† 1Department of Computer Science, National Chiao Tung University, No. 1001, University Road, Hsinchu 300, Taiwan 2Department of Computer Science and Information Engineering, National Cheng Kung University, No. 1, Ta-Hsueh Road, Tainan 701, Taiwan SUMMARY Journaling file systems, which are widely used in modern operating systems, guarantee file system consistency and data integrity by logging file system updates to a journal, which is a reserved space on the storage, before the updates are written to the data storage. Such journal writes increase the write traffic to the storage and thus degrade the file system performance, especially in full data journaling, which logs both metadata and data updates. In this paper, a new journaling approach is proposed to eliminate journal writes in server virtualization environments, which are gaining in popularity in server platforms. Based on reliable hardware subsystems and virtual machine monitor (VMM), the proposed approach eliminates journal writes by retaining journal data (i.e. logged file system updates) in the memory of each virtual machine and ensuring the integrity of these journal data through cooperation between the journaling file systems and the VMM. We implement the proposed approach in Linux ext3 in the Xen virtualization environment. According to the performance results, a performance improvement of up to 50.9% is achieved over the full data journaling approach of ext3 due to journal write elimination. -
AMD Alchemy™ Processors Building a Root File System for Linux® Incorporating Memory Technology Devices
AMD Alchemy™ Processors Building a Root File System for Linux® Incorporating Memory Technology Devices 1.0 Scope This document outlines a step-by-step process for building and deploying a Flash-based root file system for Linux® on an AMD Alchemy™ processor-based development board, using an approach that incorporates Memory Technology Devices (MTDs) with the JFFS2 file system. Note: This document describes creating a root file system on NOR Flash memory devices, and does not apply to NAND Flash devices. 1.1 Journaling Flash File System JFFS2 is the second generation of the Journaling Flash File System (JFFS). This file system provides a crash-safe and powerdown-safe Linux file system for use with Flash memory devices. The home page for the JFFS project is located at http://developer.axis.com/software/jffs. 1.2 Memory Technology Device The MTD subsystem provides a generic Linux driver for a wide range of memory devices, including Flash memory devices. This driver creates an abstracted device used by JFFS2 to interface to the actual Flash memory hardware. The home page for the MTD project is located at http://www.linux-mtd.infradead.org. 2.0 Building the Root File System Before being deployed to an AMD Alchemy platform, the file system must first be built on an x86 Linux host PC. The pri- mary concern when building a Flash-based root file system is often the size of the image. The file system must be designed so that it fits within the available space of the Flash memory, with enough extra space to accommodate any runtime-created files, such as temporary or log files. -
Filesystem Considerations for Embedded Devices ELC2015 03/25/15
Filesystem considerations for embedded devices ELC2015 03/25/15 Tristan Lelong Senior embedded software engineer Filesystem considerations ABSTRACT The goal of this presentation is to answer a question asked by several customers: which filesystem should you use within your embedded design’s eMMC/SDCard? These storage devices use a standard block interface, compatible with traditional filesystems, but constraints are not those of desktop PC environments. EXT2/3/4, BTRFS, F2FS are the first of many solutions which come to mind, but how do they all compare? Typical queries include performance, longevity, tools availability, support, and power loss robustness. This presentation will not dive into implementation details but will instead summarize provided answers with the help of various figures and meaningful test results. 2 TABLE OF CONTENTS 1. Introduction 2. Block devices 3. Available filesystems 4. Performances 5. Tools 6. Reliability 7. Conclusion Filesystem considerations ABOUT THE AUTHOR • Tristan Lelong • Embedded software engineer @ Adeneo Embedded • French, living in the Pacific northwest • Embedded software, free software, and Linux kernel enthusiast. 4 Introduction Filesystem considerations Introduction INTRODUCTION More and more embedded designs rely on smart memory chips rather than bare NAND or NOR. This presentation will start by describing: • Some context to help understand the differences between NAND and MMC • Some typical requirements found in embedded devices designs • Potential filesystems to use on MMC devices 6 Filesystem considerations Introduction INTRODUCTION Focus will then move to block filesystems. How they are supported, what feature do they advertise. To help understand how they compare, we will present some benchmarks and comparisons regarding: • Tools • Reliability • Performances 7 Block devices Filesystem considerations Block devices MMC, EMMC, SD CARD Vocabulary: • MMC: MultiMediaCard is a memory card unveiled in 1997 by SanDisk and Siemens based on NAND flash memory. -
Recursive Updates in Copy-On-Write File Systems - Modeling and Analysis
2342 JOURNAL OF COMPUTERS, VOL. 9, NO. 10, OCTOBER 2014 Recursive Updates in Copy-on-write File Systems - Modeling and Analysis Jie Chen*, Jun Wang†, Zhihu Tan*, Changsheng Xie* *School of Computer Science and Technology Huazhong University of Science and Technology, China *Wuhan National Laboratory for Optoelectronics, Wuhan, Hubei 430074, China [email protected], {stan, cs_xie}@hust.edu.cn †Dept. of Electrical Engineering and Computer Science University of Central Florida, Orlando, Florida 32826, USA [email protected] Abstract—Copy-On-Write (COW) is a powerful technique recursive update. Recursive updates can lead to several for data protection in file systems. Unfortunately, it side effects to a storage system, such as write introduces a recursively updating problem, which leads to a amplification (also can be referred as additional writes) side effect of write amplification. Studying the behaviors of [4], I/O pattern alternation [5], and performance write amplification is important for designing, choosing and degradation [6]. This paper focuses on the side effects of optimizing the next generation file systems. However, there are many difficulties for evaluation due to the complexity of write amplification. file systems. To solve this problem, we proposed a typical Studying the behaviors of write amplification is COW file system model based on BTRFS, verified its important for designing, choosing, and optimizing the correctness through carefully designed experiments. By next generation file systems, especially when the file analyzing this model, we found that write amplification is systems uses a flash-memory-based underlying storage greatly affected by the distributions of files being accessed, system under online transaction processing (OLTP) which varies from 1.1x to 4.2x. -
F2punifycr: a Flash-Friendly Persistent Burst-Buffer File System
F2PUnifyCR: A Flash-friendly Persistent Burst-Buffer File System ThanOS Department of Computer Science Florida State University Tallahassee, United States I. ABSTRACT manifold depending on the workloads it is handling for With the increased amount of supercomputing power, applications. In order to leverage the capabilities of burst it is now possible to work with large scale data that buffers to the utmost level, it is very important to have a pose a continuous opportunity for exascale computing standardized software interface across systems. It has to that puts immense pressure on underlying persistent data deal with an immense amount of data during the runtime storage. Burst buffers, a distributed array of node-local of the applications. persistent flash storage devices deployed on most of Using node-local burst buffer can achieve scalable the leardership supercomputers, are means to efficiently write bandwidth as it lets each process write to the handling the bursty I/O invoked through cutting-edge local flash drive, but when the files are shared across scientific applications. In order to manage these burst many processes, it puts the management of metadata buffers, many ephemeral user level file system solutions, and object data of the files under huge challenge. In like UnifyCR, are present in the research and industry order to handle all the challenges posed by the bursty arena. Because of the intrinsic nature of the flash devices and random I/O requests by the Scientific Applica- due to background processing overhead, like Garbage tions running on leadership Supercomputing clusters, Collection, peak write bandwidth is hard to get. -
Model-Based Failure Analysis of Journaling File Systems
Model-Based Failure Analysis of Journaling File Systems Vijayan Prabhakaran, Andrea C. Arpaci-Dusseau, and Remzi H. Arpaci-Dusseau University of Wisconsin, Madison Computer Sciences Department 1210, West Dayton Street, Madison, Wisconsin {vijayan, dusseau, remzi}@cs.wisc.edu Abstract To analyze such file systems, we develop a novel model- based fault-injection technique. Specifically, for the file We propose a novel method to measure the dependability system under test, we develop an abstract model of its up- of journaling file systems. In our approach, we build models date behavior, e.g., how it orders writes to disk to maintain of how journaling file systems must behave under different file system consistency. By using such a model, we can journaling modes and use these models to analyze file sys- inject faults at various “interesting” points during a file sys- tem behavior under disk failures. Using our techniques, we tem transaction, and thus monitor how the system reacts to measure the robustness of three important Linux journaling such failures. In this paper, we focus only on write failures file systems: ext3, Reiserfs and IBM JFS. From our anal- because file system writes are those that change the on-disk ysis, we identify several design flaws and correctness bugs state and can potentially lead to corruption if not properly present in these file systems, which can cause serious file handled. system errors ranging from data corruption to unmountable We use this fault-injection methodology to test three file systems. widely used Linux journaling file systems: ext3 [19], Reis- erfs [14] and IBM JFS [1]. -
Architecture and Performance of Perlmutter's 35 PB Clusterstor
Lawrence Berkeley National Laboratory Recent Work Title Architecture and Performance of Perlmutter’s 35 PB ClusterStor E1000 All-Flash File System Permalink https://escholarship.org/uc/item/90r3s04z Authors Lockwood, Glenn K Chiusole, Alberto Gerhardt, Lisa et al. Publication Date 2021-06-18 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Architecture and Performance of Perlmutter’s 35 PB ClusterStor E1000 All-Flash File System Glenn K. Lockwood, Alberto Chiusole, Lisa Gerhardt, Kirill Lozinskiy, David Paul, Nicholas J. Wright Lawrence Berkeley National Laboratory fglock, chiusole, lgerhardt, klozinskiy, dpaul, [email protected] Abstract—NERSC’s newest system, Perlmutter, features a 35 1,536 GPU nodes 16 Lustre MDSes PB all-flash Lustre file system built on HPE Cray ClusterStor 1x AMD Epyc 7763 1x AMD Epyc 7502 4x NVIDIA A100 2x Slingshot NICs E1000. We present its architecture, early performance figures, 4x Slingshot NICs Slingshot Network 24x 15.36 TB NVMe and performance considerations unique to this architecture. We 200 Gb/s demonstrate the performance of E1000 OSSes through low-level 2-level dragonfly 16 Lustre OSSes 3,072 CPU nodes Lustre tests that achieve over 90% of the theoretical bandwidth 1x AMD Epyc 7502 2x AMD Epyc 7763 2x Slingshot NICs of the SSDs at the OST and LNet levels. We also show end-to-end 1x Slingshot NICs performance for both traditional dimensions of I/O performance 24x 15.36 TB NVMe (peak bulk-synchronous bandwidth) and non-optimal workloads endemic to production computing (small, incoherent I/Os at 24 Gateway nodes 2 Arista 7804 routers 2x Slingshot NICs 400 Gb/s/port random offsets) and compare them to NERSC’s previous system, 2x 200G HCAs > 10 Tb/s routing Cori, to illustrate that Perlmutter achieves the performance of a burst buffer and the resilience of a scratch file system.