Characteristics of Meiofauna in Extreme Marine Ecosystems: a Review
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First Molecular Data and Morphological Re-Description of Two
Journal of King Saud University – Science 33 (2021) 101290 Contents lists available at ScienceDirect Journal of King Saud University – Science journal homepage: www.sciencedirect.com Original article First molecular data and morphological re-description of two copepod species, Hatschekia sargi and Hatschekia leptoscari, as parasites on Parupeneus rubescens in the Arabian Gulf ⇑ Saleh Al-Quraishy a, , Mohamed A. Dkhil a,b, Nawal Al-Hoshani a, Wejdan Alhafidh a, Rewaida Abdel-Gaber a,c a Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia b Department of Zoology and Entomology, Faculty of Science, Helwan University, Cairo, Egypt c Zoology Department, Faculty of Science, Cairo University, Cairo, Egypt article info abstract Article history: Little information is available about the biodiversity of parasitic copepods in the Arabian Gulf. The pre- Received 6 September 2020 sent study aimed to provide new information about different parasitic copepods gathered from Revised 30 November 2020 Parupeneus rubescens caught in the Arabian Gulf (Saudi Arabia). Copepods collected from the infected fish Accepted 9 December 2020 were studied using light microscopy and scanning electron microscopy and then examined using stan- dard staining and measuring techniques. Phylogenetic analyses were conducted based on the partial 28S rRNA gene sequences from other copepod species retrieved from GenBank. Two copepod species, Keywords: Hatschekia sargi Brian, 1902 and Hatschekia leptoscari Yamaguti, 1939, were identified as naturally 28S rRNA gene infected the gills of fish. Here we present a phylogenetic analysis of the recovered copepod species to con- Arabian Gulf Hatschekiidae firm their taxonomic position in the Hatschekiidae family within Siphonostomatoida and suggest the Marine fish monophyletic origin this family. -
Biogeographic Atlas of the Southern Ocean
Census of Antarctic Marine Life SCAR-Marine Biodiversity Information Network BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN CHAPTER 5.3. ANTARCTIC FREE-LIVING MARINE NEMATODES. Ingels J., Hauquier F., Raes M., Vanreusel A., 2014. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 83-87. EDITED BY: Claude DE BROYER & Philippe KOUBBI (chief editors) with Huw GRIFFITHS, Ben RAYMOND, Cédric d’UDEKEM d’ACOZ, Anton VAN DE PUTTE, Bruno DANIS, Bruno DAVID, Susie GRANT, Julian GUTT, Christoph HELD, Graham HOSIE, Falk HUETTMANN, Alexandra POST & Yan ROPERT-COUDERT SCIENTIFIC COMMITTEE ON ANTARCTIC RESEARCH THE BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN The “Biogeographic Atlas of the Southern Ocean” is a legacy of the International Polar Year 2007-2009 (www.ipy.org) and of the Census of Marine Life 2000-2010 (www.coml.org), contributed by the Census of Antarctic Marine Life (www.caml.aq) and the SCAR Marine Biodiversity Information Network (www.scarmarbin.be; www.biodiversity.aq). The “Biogeographic Atlas” is a contribution to the SCAR programmes Ant-ECO (State of the Antarctic Ecosystem) and AnT-ERA (Antarctic Thresholds- Ecosys- tem Resilience and Adaptation) (www.scar.org/science-themes/ecosystems). Edited by: Claude De Broyer (Royal Belgian Institute of Natural Sciences, Brussels) Philippe Koubbi (Université Pierre et Marie Curie, Paris) Huw Griffiths (British Antarctic Survey, Cambridge) Ben Raymond (Australian -
Three New Genera and Species of Siphonostomatoid Copepods (Crustacea) Associated with Sponges from Samar Island in the Philippines, with a Proposal of a New Family
Anim. Syst. Evol. Divers. Vol. 34, No. 2: 79-91, April 2018 https://doi.org/10.5635/ASED.2018.34.2.008 Review article Three New Genera and Species of Siphonostomatoid Copepods (Crustacea) Associated with Sponges from Samar Island in the Philippines, with a Proposal of a New Family Jimin Lee1, Il-Hoi Kim2,* 1Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Busan 49111, Korea 2Korea Institute of Coastal Ecology, Bucheon 14449, Korea ABSTRACT Three new genera and species of siphonostomatoid copepods are described as associates of sponges from shallow water of Samar Island in the Philippines: Samarus filipes n. gen., n. sp., Paurocheres dentatus n. gen., n. sp., and Platymyzon umbonatum n. gen., n. sp. A new family Samarusidae is proposed to accommodate Samarus n. gen. which has rudimentary legs 1-5 represented only by filiform setae. Paurocheres n. gen. is characterized by 2-segmented endopod of leg 4 and reduced setation of legs, and Platymyzon n. gen. by missing of mandibular gnathobase. Keywords: Samarusidae n. fam., three new genera, Samarus, Paurocheres, Platymyzon, sponge hosts INTRODUCTION MATERIALS AND METHODS Siphonostomatoid copepods associated with invertebrates Studied copepod material was obtained from washings of are small copepod, mostly less than 2 mm in length (Humes, mixed species of sponges. These sponge hosts were collected 1997a). Although sponges in the tropical Indo-Pacific har- by SCUBA divers of KIOST in the depth of 15-25 m on Feb- bor numerous siphonostomatoid copepods (Humes, 1996), ruary 24, 2017. For microscopic study selected copepod spe- perhaps Lee and Kim (2017) was the only record on the co- cimens were dissected in lactic acid and observed using the pepods associated with sponges from the Philippines. -
Bellec Et Al.5)
Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, Lucile Durand, Nicolas Gayet, Daniela Zeppilli To cite this version: Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, et al.. Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. Scientific Reports, Nature Publishing Group, 2019, 9 (1), 10.1038/s41598-019-43517-8. hal-02265357 HAL Id: hal-02265357 https://hal.archives-ouvertes.fr/hal-02265357 Submitted on 9 Aug 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. www.nature.com/scientificreports OPEN Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Received: 30 October 2018 Laure Bellec1,2,3,4, Marie-Anne Cambon Bonavita2,3,4, Stéphane Hourdez5,6, Mohamed Jebbar 3,4, Accepted: 2 April 2019 Aurélie Tasiemski 7, Lucile Durand2,3,4, Nicolas Gayet1 & Daniela Zeppilli1 Published: xx xx xxxx Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Phylogenetic and Functional Characterization of Symbiotic Bacteria in Gutless Marine Worms (Annelida, Oligochaeta)
Phylogenetic and functional characterization of symbiotic bacteria in gutless marine worms (Annelida, Oligochaeta) Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften -Dr. rer. nat.- dem Fachbereich Biologie/Chemie der Universität Bremen vorgelegt von Anna Blazejak Oktober 2005 Die vorliegende Arbeit wurde in der Zeit vom März 2002 bis Oktober 2005 am Max-Planck-Institut für Marine Mikrobiologie in Bremen angefertigt. 1. Gutachter: Prof. Dr. Rudolf Amann 2. Gutachter: Prof. Dr. Ulrich Fischer Tag des Promotionskolloquiums: 22. November 2005 Contents Summary ………………………………………………………………………………….… 1 Zusammenfassung ………………………………………………………………………… 2 Part I: Combined Presentation of Results A Introduction .…………………………………………………………………… 4 1 Definition and characteristics of symbiosis ...……………………………………. 4 2 Chemoautotrophic symbioses ..…………………………………………………… 6 2.1 Habitats of chemoautotrophic symbioses .………………………………… 8 2.2 Diversity of hosts harboring chemoautotrophic bacteria ………………… 10 2.2.1 Phylogenetic diversity of chemoautotrophic symbionts …………… 11 3 Symbiotic associations in gutless oligochaetes ………………………………… 13 3.1 Biogeography and phylogeny of the hosts …..……………………………. 13 3.2 The environment …..…………………………………………………………. 14 3.3 Structure of the symbiosis ………..…………………………………………. 16 3.4 Transmission of the symbionts ………..……………………………………. 18 3.5 Molecular characterization of the symbionts …..………………………….. 19 3.6 Function of the symbionts in gutless oligochaetes ..…..…………………. 20 4 Goals of this thesis …….………………………………………………………….. -
A Review on Taxonomy of Phylum Kinorhyncha
Open Journal of Marine Science, 2020, 10, 260-294 https://www.scirp.org/journal/ojms ISSN Online: 2161-7392 ISSN Print: 2161-7384 A Review on Taxonomy of Phylum Kinorhyncha C. Jeeva, P. M. Mohan, P. Ragavan, V. Muruganantham Department of Ocean Studies and Marine Biology, Pondicherry University, Brookshabad Campus, Port Blair, Andaman and Nicobar Islands, India How to cite this paper: Jeeva, C., Mo- Abstract han, P.M., Ragavan, P. and Muruganan- tham, V. (2020) A Review on Taxonomy Kinorhyncha is exclusively marine, holobenthic, free-living, meiofaunal spe- of Phylum Kinorhyncha. Open Journal of cies found in all marine habitats in the world. However, information on geo- Marine Science, 10, 260-294. graphical distribution and taxonomical distributional status of Kinorhyncha https://doi.org/10.4236/ojms.2020.104020 are needed further understanding. This research article presents a compiled, Received: September 10, 2020 up-to-date checklist of the Phylum Kinorhyncha based on bibliographical Accepted: October 27, 2020 survey and revision of taxon names. Present checklist of this phylum com- Published: October 30, 2020 prises 271 species belonging to 30 genera and 13 families. The families are Copyright © 2020 by author(s) and distributed under three orders, Echinorhagata Sørensen et al. 2015, Kentror- Scientific Research Publishing Inc. hagata Sørensen et al. 2015, Xenosomata Zelinka, 1907. Among the 271 valid This work is licensed under the Creative species, in the last five years 82 new species emerged, two new orders and Commons Attribution International three families were described. It also includes nine new genera. This checklist License (CC BY 4.0). -
Free-Living Marine Nematodes from San Antonio Bay (Río Negro, Argentina)
A peer-reviewed open-access journal ZooKeys 574: 43–55Free-living (2016) marine nematodes from San Antonio Bay (Río Negro, Argentina) 43 doi: 10.3897/zookeys.574.7222 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina) Gabriela Villares1, Virginia Lo Russo1, Catalina Pastor de Ward1, Viviana Milano2, Lidia Miyashiro3, Renato Mazzanti3 1 Laboratorio de Meiobentos LAMEIMA-CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina 2 Universidad Nacional de la Patagonia San Juan Bosco, sede Puerto Madryn. Boulevard Brown 3051, U9120ACF, Puerto Madryn, Argentina 3Centro de Cómputos CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina Corresponding author: Gabriela Villares ([email protected]) Academic editor: H-P Fagerholm | Received 18 November 2015 | Accepted 11 February 2016 | Published 28 March 2016 http://zoobank.org/3E8B6DD5-51FA-499D-AA94-6D426D5B1913 Citation: Villares G, Lo Russo V, Pastor de Ward C, Milano V, Miyashiro L, Mazzanti R (2016) Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina). ZooKeys 574: 43–55. doi: 10.3897/zookeys.574.7222 Abstract The dataset of free-living marine nematodes of San Antonio Bay is based on sediment samples collected in February 2009 during doctoral theses funded by CONICET grants. A total of 36 samples has been taken at three locations in the San Antonio Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for benthic biodiversity assessment of Patagonian nematodes as this area remains one of the least known regions. -
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 316-317 Ivanenko V.N. & Defaye D. 2006. Copepoda. In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 318-355 Viatcheslav N. IVANENKO, Ph.D. Department of Invertebrate Zoology Biological Faculty, Moscow State University Leninskie Gory, 1-12 Moscow 119992, Russia http://www.nature.ok.ru/invertebrates/cv.html Handbook of Deep-Sea Hydrothermal Vent Fauna D. DESBRYÈRES, M. SEGONZAC & M. BRIGHT (Eds.) Denisia 18, 544 pages (27 x 21 cm) ISSN: 1608-8700; ISBN: 10 3-85474-154-5 or ISBN: 13 978-3-85474-154-1 Ordering via e-mail: [email protected] Price: 49 € (excl. shipping) The second extensively expanded edition of the "Handbook of Deep-Sea Hydrothermal Vent Fauna" gives on overview of our current knowledge on the animals living at hydrothermal vents. The discovery of hydrothermal vents and progresses made during almost 30 years are outlined. A brief introduction is given on hydrothermal vent meiofauna and parasites. Geographic maps and a table of mid-ocean ridges and back-arc basins with the major known hydrothermal vent fields, their location and depth range and the most prominent vent sites are provided. Higher taxa are presented individually with information on the current taxonomic and biogeographic status, the number of species described, recommendations for fixation, and schematic drawings, which aim to help non-specialists to identify the animals. 86 authors contributed with their expertise to create a comprehensive database on animals living at hydrothermal vents, which contains information on the morphology, biology, and geographic distribution of more than 500 currently described species belonging to one protist and 12 animal phyla. -
Copepoda, Siphonostomatoida, Asterocheridae)
A peer-reviewed open-access journal ZooKeys 607:A new93–102 species (2016) of Monocheres Stock (Copepoda, Siphonostomatoida, Asterocheridae)... 93 doi: 10.3897/zookeys.607.9137 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research A new species of Monocheres Stock (Copepoda, Siphonostomatoida, Asterocheridae) from shallow waters off Florida, USA: an unexpected discovery Eduardo Suárez-Morales1 1 El Colegio de la Frontera Sur (ECOSUR), Unidad Chetumal. A.P. 424, Av. Centenario Km 5.5, Chetumal, Quintana Roo 77014, Mexico Corresponding author: Eduardo Suárez-Morales ([email protected]) Academic editor: D. Defaye | Received 10 May 2016 | Accepted 13 July 2016 | Published 27 July 2016 http://zoobank.org/1B09E08D-457F-46AF-8AB1-06AC8D226814 Citation: Suárez-Morales E (2016) A new species of Monocheres Stock (Copepoda, Siphonostomatoida, Asterocheridae) from shallow waters off Florida, USA: an unexpected discovery. ZooKeys 607: 93–102.doi: 10.3897/zookeys.607.9137 Abstract The rare asterocherid copepod genus Monocheres, ectosymbionts of corals and sponges, contains only two species, one from Mauritius (Indian Ocean) and the other one from Brazil (western Atlantic). From the analysis of the digestive caecum contents of the benthic hesionid polychaete Hesione picta Müller, 1858, an adult female of an undescribed species of Monocheres was unexpectedly recovered; it is the third species of this rare asterocherid genus. The new species, M. sergioi sp. n., has the distinctive reduction of the fifth leg as a process with a single seta. It differs from its two other congeners by several characters including the presence of an inner basipodal spine, the armature details of the third exopodal segment of leg 1, the shape of the cephalosome and pedigerous somites 3 and 4, and the ornamentation of the postero-lateral corners of the genital double-somite. -
CURRICULUM VITAE NICOLE DUBILIER Address Max-Planck
CURRICULUM VITAE NICOLE DUBILIER Address Max-Planck-Institute for Marine Microbiology (MPI-MM) Celsiusstr. 1, D-28359 Bremen Tel. +49 421 2028-932 email: [email protected] Academic Training 1985 University of Hamburg Zoology, Biochemistry, Diplom Microbiology 1992 University of Hamburg Marine Biology PhD Dissertation Title: Adaptations of the Marine Oligochaete Tubificoides benedii to Sulfide-rich Sediments: Results from Ecophysiological and Morphological Studies. Current Position Director of the Max Planck Institute for Marine Microbiology (MPI-MM) Head of the Symbiosis Department at the MPI-MM (W3 position) Professor for Microbial Symbiosis at the University of Bremen, Germany Academic Positions Since 2013 Director of the Symbiosis Department at the MPI-MM (W3 position) Since 2012 Professor for Microbial Symbiosis at the University of Bremen, Germany Since 2012 Affiliate Professor at MARUM, University of Bremen 2007 - 2013 Head of the Symbiosis Group at the MPI-MM (W2 position) 2002 - 2006 Coordinator of the International Max Planck Research School of Marine Microbiology 2004 - 2005 Invited Visiting Professor at the University of Pierre and Marie Curie, Paris, France (2 months) 2001 - 2006 Research Associate in the Department of Molecular Ecology at the MPI-MM 1998 - 2001 Postdoctoral Fellow at the MPI-MM in the DFG Project: "Evolution of symbioses between chemoautotrophic bacteria and gutless marine worms" 1997 Parental leave 1995 - 1996 Research Assistant at the University of Hamburg in the BMBF project: "Hydrothermal fluid development and material balance in the North Fiji Basin" 1993 - 1995 Postdoctoral Fellow in the laboratory of Dr. Colleen Cavanaugh, Harvard University, MA, USA in the NSF project "Biogeography of chemoautotrophic symbioses in marine oligochaetes" 1990 - 1993 Research Assistant at the University of Hamburg in the EU project 0044: Sulphide- and methane-based ecosystems. -
Chemosynthetic Ectosymbionts Associated with a Shallow-Water
www.nature.com/scientificreports OPEN Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Received: 30 October 2018 Laure Bellec1,2,3,4, Marie-Anne Cambon Bonavita2,3,4, Stéphane Hourdez5,6, Mohamed Jebbar 3,4, Accepted: 2 April 2019 Aurélie Tasiemski 7, Lucile Durand2,3,4, Nicolas Gayet1 & Daniela Zeppilli1 Published: xx xx xxxx Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. We used a multi-approach study based on microscopic observations (Scanning Electron Microscopy and Fluorescence In Situ Hybridization) coupled with an assessment of molecular diversity using metabarcoding based on the 16S rRNA gene. All investigated free-living marine nematode specimens harboured distinct microbial communities (from the surrounding water and sediment and through the seasons) with ectosymbiosis seemed more abundant during summer. Microscopic observations distinguished two main morphotypes of bacteria (rod-shaped and flamentous) on the cuticle of these nematodes, which seemed to be afliated to Campylobacterota and Gammaproteobacteria, respectively. Both ectosymbionts belonged to clades of bacteria usually associated with invertebrates from deep-sea hydrothermal vents. The presence of the AprA gene involved in sulfur metabolism suggested a potential for chemosynthesis in the nematode microbial community. The discovery of potential symbiotic associations of a shallow-water organism with taxa usually associated with deep-sea hydrothermal vents, is new for Nematoda, opening new avenues for the study of ecology and bacterial relationships with meiofauna.