Thesis by Thomas L. Benjamin in Partial Fulfillment of The

Total Page:16

File Type:pdf, Size:1020Kb

Thesis by Thomas L. Benjamin in Partial Fulfillment of The RADIOBIOLOGICAL AND BIOCHEMICAL INVESTIGATIONS OF POLYOMA VIRUS - CELL DITERAC'TIONS Thesis by Thomas L. Benjamin In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy California Institute of ?echnology Pasadena, California 1965 DEDICATED TO MY FATHER iii ACKNOWLEIX}D1EN'J.'S To members of the f aculty of the Biology Division I would like to express my sincere appreciation for the knowledee, stimulation, gui dance and friendship which was extended to me. To Dr. Renato D.llbecco I owe special thanks for his expert guida nce and invaluable a dvice . I am also greatly indebted to Dr. Giuseppe Attardi for his generosity, advice and encouragement during the last half of my graduate work . Certain phases of my work have benefitted greatly f r om the sound advice and help of Dr. Jerome Vinograd and his associates, for which I run most srateful. The invaluable technical assistance given by Mrs. Laverne Wenzel, Mrs. Arger Drew and Mrs. Bennetn Keeley is very gratefully acknowledged. A great meas~re of thanks is also due my fellow graduate students, contacts with whom have been most stimulating and rewarding. Finally, I would like t o acknowledge the financial support received f rom the United States Public Health Service (training grant 5 Tl­ GM- 86.) iv ABSTRACT' The cytolytic in-ceraction of Polyoma virus with mouse embryo cells has been st~clied by radiobioloGical methods known to distinrsuish tem- p-erate f'rom virulent bacteriophage . No evidence :for " t.emp e:rate" proper- ties of Polyoma was found. Thlring the course of these studies, it was observed that the curve of inactivation of Polyoma virus by ultraviolet light had. two components - a more sensitive one at low doses, and a less sensitive one at higher doses. Virus which survives a low dose has an eclipse period similar to that of unirracliated virus, while virus surviving higher doses shows a significantly longer eclipse period. If Puromycin is present during the early part of the eclipse period, the survival curve becomes a single exponential with the sensitivity of the less sensitive component. These results suggest a repair mech- anism in mouse cells which operates more effectively if vir us development is delayed. A comparison of the rat es of i nactivation of the cytol ytic and trans forming abilities of Polyoma oy ultraviolet light, X-rays, nitrous - 2 acid treatment, or the decay of incorporated P3 , showed that the trans- forming ability has a target size rougi:lly &:Yfo of that of the plaque- forming abili ty. It is thus concluded that only a fraction of the viral genes are necessary for causing transformation. v The appearance of virus-specific RNA in productively infected mouse kidney cells has been followed by means of hybridization between pulse-labelled RNA from the infected cells and the purified virus DNA . The results show a sharp increase in the amount of virus-specific RNA ·around the time of virus DNA synthesis. The presence of a small amount of virus-specific RNA in virus- free transformed cells has also been shown. This r esult offers strong evidence for the persistence of at least part of the viral genome in transformed cells. vi TABLE OF CONTIDrI'S Part Title GENERAL I NTRODUCT ION 1 A. Results with Rous Sarcoma Vi rus 2 B. Results with Polyoma Virus 3 C. Outline of the Thesis 5 References 7 PART I . A RADIOBIOLOGICAL STUDY OF THE POLYOMA VIRUS - MOUSE EMBRYO CELL INTERACTION 10 Figure 1 . X-ray inactivation of Py and HSV 30 Figure 2 . X-ray capacity and cloning curves 31 Figure 3. UV inactivation of Py and HSY 32 Figure 4. UV capacity and cloning curves 33 Figure 5. Survivals of irradiated virus on irradiated cells Figure 6. Growth curves of UV-irradiated and unirradiated Py 35 Figure 7. Gro•rth curves of UV-irradiated and unirradiated Py with Puromycin between 3rd and 11th hours Figure 8. Growth curves of UV- i rradiated and unirradiated Py with Puromycin between 2oth and 28th hours 37 Figur e 9. UV survival curve of Py on cells exposed to UV or Puromycin vii Part Ti tle PART II. RELATIVE 'l'AllG~ SIZES FOR THE I NACTIVATIONS OF THE Til4NSFORMING AliD REPRODUCTIVE ABILITIES OF POLYOMA VIRUS 39 Figure 1 . Inactivat ion of plaque- forming and t rans- forming abilities of polyoma virus 47 PARI' III. VIRUS- SPECIFIC RNA I N CELLS PRODUCTIVELY INFECTED OR TRANSFORMED BY POLYOMA VIRUS 48 Figure l . Growth curves of virus under normal and low-phosphate conditions Figure 2. Virus- specific fu"'tA in infected mouse kidney cells 66 Figure 3. Kinetics of hybrid formation at 6o 0 c 67 Figure 4. Attempts to exhaust virus -specific RNA f rom ru1A of diffe ren~ periods 68 Figure 5. Attempts to saturate viral DNA '-Tith RNA of different periods Figure 6. Relative amounts of virus-specific RNA a~ different times af'ter infection 70 Figure 7. Attempts to saturate viral DNA with early and l ate IBiA 71 Figure 8. Hyb riciization of infected and uninfected cell RJ."'ffi. '-Tith mouse DNA 72 Figure 9. Test for viru ~ -s p ecific RNA in normal and transformed cells 73 viii Part Title RECAPITlJLATION AND COKC LUSIONS A. Brief Recapitulation of Results 77 B. General Conclusions 77 l GENERAL INTRODUCTION The phenomenon of virus-induced neoplastic transformation of animal cells in culture (referred to hereafter simply as transformation) has become the object of an increased amount of attention and inves- tigation in recent years. The term "transformation" is broadly used to describe the acquisition of certain heritable characteristics referring both to cellular morpholoey and, more frequently, to patterns of cell growth and interaction - specificall y, multilayer ed and criss­ cross growth pattern, and loss of contact inhibition(l). Cells trans- formed i n vitro by viruses have been shown to give rise to tumors when injected into animals, and primary virus-induced tumors transplanted into culture show growth properties sirr~ lar to those of transformed cells . On the basis of such observations , transformation is generally regarded as the in vitro com1terpart of tumor -induction. Si gnificant proeress in understanding this phenomenon has been made during t he l a st few years , due in part to improvements in tech- niques for studyi ng virus-cell interactions in tissue culture, and also to rapidly expanding knowledge in fundamentally related fields , such as biochernistrJ, physiological phage genetics, etc. Studies of two viruses in particular nave been fruitful in defining the pos sible roles of virus in transformation. One is the Rous Sar co~B Virus (RSV), repre­ 2 sentative of the group of RNA- containing Avian l eukosis vi ruses( ), and the other is polyoma virus (Py), a member of a group of smal l DNA-con- taining Mammalian tumor viruses which also includes rabbit papilloma 2 virus, human warts virus, and SV-40 virus. A brief description and sUlilillary of the important findings with these two viruses will be given, followed by an explanation of the plan of the thesis and the purposes behind the experiments . A. Results with Rous Sarcoma Virus Particles of RSV are roughly spherical, about 100 mµ in diameter, 4 and contain protein and lipid in a ddition to RNA ( 3, ). Release of virus f rora infected fowl cells in culture occurs continuously and without associated cell death(5). When infected at high multiplicity, most or 6 all of the cells become transformed( ) and release virus; however, at low multiplicities of infection, non-virus - producing transformed cells can be isolated. The production of P.SV in transformed cells is linked to the p resence of "helper" virus normally present i n RSV stocks. The helper virus can be any of several viruses in the Avian leukosis group . Non-virus-producini:s transformed cells, grown f or many cell generations, can be made to release RSV by reinfection with one of the helper viruses . The antigenic specificity of the nSV t hus produced is the same as that of the helper virus. (7, 8,9,10 ) . These f indings have shown that RSV is a defective virus, al tered in some late fUnction involved in the synthesis of the protein coat, and that the defective genome persists in t he trans- fanned cells. Furthermore, a direct role of the RSV genome in determin- ing properties of the transformed cells is shown by the f act that dif- ferent virus mutants induce different morphological tY})es of transformed cells (ll). 3 B. Results with Polyoma Virus Py is a small icosaheciral virus, npproximately 43 mµ in diameter(l2 ), and consists of protein and a double- stranded circular DNA of molecular 6 14 weiG. ht 3 x 10. (l3, ) . T'ne vir. us is. capab- 1 e o f in. ducing . a wide. variety. .of tumors in rodents (l5). Both the cytolytic interaction with embryonic 6 mouse Cells(l ,l7) and the non-c yt o lyti~ c (t rans ""~o rma t ion' ) in· t eraction· with hamster cells(lB,l9) can be obtained wi~h the viral Tu'tA alone(20,2l). - 4 The effeciency of t he virus for transformation i s low, roughly 10 of that for plaque formation . In a ddition, a maximum of only a f ew per cent of infected cells become transformed a~er a single exposure . (22) to a high concentration of VJ..rus . Efforts to i nduce the development of infectious virus from trans- formed cells by a variety of treatments knmm to induce the development 2 3 24 o f proph age 'nave give.
Recommended publications
  • Knowles2020 Naturecomm.Pdf
    ARTICLE https://doi.org/10.1038/s41467-020-18078-4 OPEN Temperate infection in a virus–host system previously known for virulent dynamics ✉ Ben Knowles 1 , Juan A. Bonachela 2, Michael J. Behrenfeld3, Karen G. Bondoc 1, B. B. Cael4, Craig A. Carlson5, Nick Cieslik1, Ben Diaz1, Heidi L. Fuchs 1, Jason R. Graff3, Juris A. Grasis 6, Kimberly H. Halsey 7, Liti Haramaty1, Christopher T. Johns1, Frank Natale1, Jozef I. Nissimov8, Brittany Schieler1, Kimberlee Thamatrakoln 1, T. Frede Thingstad9, Selina Våge9, Cliff Watkins1, ✉ Toby K. Westberry 3 & Kay D. Bidle 1 1234567890():,; The blooming cosmopolitan coccolithophore Emiliania huxleyi and its viruses (EhVs) are a model for density-dependent virulent dynamics. EhVs commonly exhibit rapid viral repro- duction and drive host death in high-density laboratory cultures and mesocosms that simulate blooms. Here we show that this system exhibits physiology-dependent temperate dynamics at environmentally relevant E. huxleyi host densities rather than virulent dynamics, with viruses switching from a long-term non-lethal temperate phase in healthy hosts to a lethal lytic stage as host cells become physiologically stressed. Using this system as a model for temperate infection dynamics, we present a template to diagnose temperate infection in other virus–host systems by integrating experimental, theoretical, and environmental approaches. Finding temperate dynamics in such an established virulent host–virus model system indicates that temperateness may be more pervasive than previously considered, and that the role of viruses in bloom formation and decline may be governed by host physiology rather than by host–virus densities. 1 Department of Marine and Coastal Science, Rutgers University, New Brunswick, NJ 08901, USA.
    [Show full text]
  • Cell Size Homeostasis and Optimal Viral Strategies
    CELL SIZE HOMEOSTASIS AND OPTIMAL VIRAL STRATEGIES FOR HOST EXPLOITATION by Cesar Augusto Vargas-Garcia A dissertation submitted to the Faculty of the University of Delaware in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Electrical and Computer Engineering Fall 2017 c 2017 Cesar Augusto Vargas-Garcia All Rights Reserved ACKNOWLEDGEMENTS I want to thank my advisor Abhyudai Singh. He discovered my professional potential and helped me to achieve this important goal in my life. I am grateful to the Dean, the Faculty, and the Staff of the Department of Electrical and Computer Engineering for providing their assistance and support through the years of my Ph.D. program. I want to thank also my co-advisor and friend, Dr. Ryan Zurakowski. He gave me the opportunity to start and enjoy this field. Also he encouraged me to be resilient in pursuing my degree in the hard days. I want to thank to professor and close friend Henry Arguello for all his support and advice through this years. I also want to thank my wife and daughter, Neyla Johanna and Victoria for their support and encouragement during my studies. They provided me the home to rest after every hard day. My students and alma-mater group HDSP gave me the motivation and encour- agement to make the best effort in my research. They have been my friends and part of my family during this time. I appreciate their collaboration and company in this part of my life. Special thanks to my friends and colleagues Mohammad Soltani and Khem Ghusinga for their support, friendship and collaborations in uncountable and exciting projects which are nowadays the core of my research.
    [Show full text]
  • Evaluation of a Potential Bacteriophage Cocktail for the Control of Shiga-Toxin Producing Escherichia Coli in Food
    fmicb-11-01801 July 23, 2020 Time: 17:24 # 1 ORIGINAL RESEARCH published: 24 July 2020 doi: 10.3389/fmicb.2020.01801 Evaluation of a Potential Bacteriophage Cocktail for the Control of Shiga-Toxin Producing Escherichia coli in Food Nicola Mangieri, Claudia Picozzi*, Riccardo Cocuzzi and Roberto Foschino Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, Milan, Italy Shiga-toxin producing Escherichia coli (STEC) are important foodborne pathogens involved in gastrointestinal diseases. Furthermore, the recurrent use of antibiotics to treat different bacterial infections in animals has increased the spread of antibiotic-resistant bacteria, including E. coli, in foods of animal origin. The use of bacteriophages for the control of these microorganisms is therefore regarded as a valid alternative, especially considering the numerous advantages (high specificity, self-replicating, self-limiting, harmless to humans, animals, and plants). This study aimed to isolate bacteriophages Edited by: Lin Lin, active on STEC strains and to set up a suspension of viral particles that can be potentially Jiangsu University, China used to control STEC food contamination. Thirty-one STEC of different serogroups Reviewed by: (O26; O157; O111; O113; O145; O23, O76, O86, O91, O103, O104, O121, O128, Kim Stanford, Alberta Ministry of Agriculture and O139) were investigated for their antibiotic resistance profile and sensitivity to phage and Forestry, Canada attack. Ten percent of strains exhibited a high multi-resistance profile, whereas ampicillin Nancy Ann Strockbine, was the most effective antibiotic by inhibiting 65% of tested bacteria. On the other Centers for Disease Control and Prevention (CDC), United States side, a total of 20 phages were isolated from feces, sewage, and bedding material of *Correspondence: cattle.
    [Show full text]
  • Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, Vb Vham Pir03 with Broad Host Lytic Activity Against Vibrio Harveyi
    pathogens Article Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, vB_VhaM_pir03 with Broad Host Lytic Activity against Vibrio harveyi Gerald N. Misol, Jr. 1,2 , Constantina Kokkari 1 and Pantelis Katharios 1,* 1 Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Center for Marine Research, 71500 Heraklion, Crete, Greece; [email protected] (G.N.M.J.); [email protected] (C.K.) 2 Department of Biology, University of Crete, 71003 Heraklion, Crete, Greece * Correspondence: [email protected] Received: 18 October 2020; Accepted: 14 December 2020; Published: 15 December 2020 Abstract: Vibrio harveyi is a Gram-negative marine bacterium that causes major disease outbreaks and economic losses in aquaculture. Phage therapy has been considered as a potential alternative to antibiotics however, candidate bacteriophages require comprehensive characterization for a safe and practical phage therapy. In this work, a lytic novel jumbo bacteriophage, vB_VhaM_pir03 belonging to the Myoviridae family was isolated and characterized against V. harveyi type strain DSM19623. It had broad host lytic activity against 31 antibiotic-resistant strains of V. harveyi, V. alginolyticus, V. campbellii and V. owensii. Adsorption time of vB_VhaM_pir03 was determined at 6 min while the latent-phase was at 40 min and burst-size at 75 pfu/mL. vB_VhaM_pir03 was able to lyse several host strains at multiplicity-of-infections (MOI) 0.1 to 10. The genome of vB_VhaM_pir03 consists of 286,284 base pairs with 334 predicted open reading frames (ORFs). No virulence, antibiotic resistance, integrase encoding genes and transducing potential were detected. Phylogenetic and phylogenomic analysis showed that vB_VhaM_pir03 is a novel bacteriophage displaying the highest similarity to another jumbo phage, vB_BONAISHI infecting Vibrio coralliilyticus.
    [Show full text]
  • Temporal Dynamics of Uncultured Viruses: a New Dimension in Viral Diversity
    The ISME Journal (2018) 12, 199–211 © 2018 International Society for Microbial Ecology All rights reserved 1751-7362/18 www.nature.com/ismej ORIGINAL ARTICLE Temporal dynamics of uncultured viruses: a new dimension in viral diversity Ksenia Arkhipova1,2, Timofey Skvortsov1,3, John P Quinn1, John W McGrath1,3, Christopher CR Allen1,3, Bas E Dutilh2,4, Yvonne McElarney5 and Leonid A Kulakov1 1School of Biological Sciences, The Queen’s University of Belfast, Belfast, UK; 2Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, The Netherlands; 3Institute for Global Food Security, The Queen’s University of Belfast, Belfast, UK; 4Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, Nijmegen, The Netherlands and 5Agri-Food and Biosciences Institute, Belfast, UK Recent work has vastly expanded the known viral genomic sequence space, but the seasonal dynamics of viral populations at the genome level remain unexplored. Here we followed the viral community in a freshwater lake for 1 year using genome-resolved viral metagenomics, combined with detailed analyses of the viral community structure, associated bacterial populations and environ- mental variables. We reconstructed 8950 complete and partial viral genomes, the majority of which were not persistent in the lake throughout the year, but instead continuously succeeded each other. Temporal analysis of 732 viral genus-level clusters demonstrated that one-fifth were undetectable at specific periods of the year. Based on host predictions for a subset of reconstructed viral genomes, we for the first time reveal three distinct patterns of host–pathogen dynamics, where the viruses may peak before, during or after the peak in their host’s abundance, providing new possibilities for modelling of their interactions.
    [Show full text]
  • The Effect of Multiplicity of Infection on the Temperateness of a Bacteriophage: Implications for Viral Fitness
    2017 IEEE 56th Annual Conference on Decision and Control (CDC) December 12-15, 2017, Melbourne, Australia The Effect of Multiplicity of Infection on the Temperateness of a Bacteriophage: Implications for Viral Fitness Joshua A. Blotnick1,Cesar´ A. Vargas-Garc´ıa2, John J. Dennehy 3, Ryan Zurakowski4, and Abhyudai Singh5 Abstract— Since phage-bacteria interactions are among the acid into the genome of the host cell [7], [8]. A phage most abundant in nature, they have become in the object of thus integrated is called a prophage. While the prophage intensive study. In particular, how phages evolved temperate- remains latent, it does not impede the host cell in any ness – the propensity of the phage to enter lysogeny – and how temparateness has been optimized, remains poorly understood. way. The bacterium will continue thriving and propagating, In this work, we study the advantages of the lysogeny over the copying and transmitting the prophage into its progeny. This lytic path in phages under fluctuating environments. Also we allows the phage to reproduce without exposing itself to the explore how multiplicity of infection (MOI) drives the decision detrimental effects of the outside environment. The lysogen made by the phage. We found that temperate phages might has the ability to maintain its current state of latency or use the lysogenic path to protect themselves from long periods of bad conditions. Additionally, phages with MOI strategies undergo induction. When induction occurs, prophage DNA might have better chances of survive long periods of detrimental is cut off from the bacterial genome and coat proteins are conditions. produced via transcription and translation of the phage DNA for the regulation of lytic growth.
    [Show full text]
  • Challenges and Future Prospects of Antibiotic Therapy: from Peptides to Phages Utilization
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE REVIEW ARTICLEprovided by Frontiers - Publisher Connector published: 13 May 2014 doi: 10.3389/fphar.2014.00105 Challenges and future prospects of antibiotic therapy: from peptides to phages utilization Santi M. Mandal 1*†, Anupam Roy 1†, Ananta K. Ghosh1,Tapas K. Hazra 2 , Amit Basak1 and Octavio L. Franco 3 * 1 Central Research Facility, Department of Chemistry and Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, India 2 Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Texas Medical Branch at Galveston, Galveston, TX, USA 3 Centro de Análises Proteômicas e Bioquímicas, Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasilia, Brazil Edited by: Bacterial infections are raising serious concern across the globe. The effectiveness of Miguel Castanho, University of conventional antibiotics is decreasing due to global emergence of multi-drug-resistant Lisbon, Portugal (MDR) bacterial pathogens.This process seems to be primarily caused by an indiscriminate Reviewed by: and inappropriate use of antibiotics in non-infected patients and in the food industry. New Frederico Nuno C. Aires Da Silva, University of Lisbon, Portugal classes of antibiotics with different actions against MDR pathogens need to be developed Margarida Bastos, University of Porto, urgently. In this context, this review focuses on several ways and future directions to search Portugal for the next generation of safe and effective antibiotics compounds including antimicrobial Marta Planas, University of Girona, Spain peptides, phage therapy, phytochemicals, metalloantibiotics, lipopolysaccharide, and efflux pump inhibitors to control the infections caused by MDR pathogens.
    [Show full text]
  • Brown MR 2019.Pdf
    Virus Dynamics and their Interactions with Microbial Communities and Ecosystem Functions in Engineered Systems. A thesis submitted to Newcastle University in partial fulfilment of the requirements for the degree of Doctor of Philosophy in the Faculty of Science, Agriculture and Engineering. Author: Mathew Robert Brown Supervisor: Professor Tom Curtis Co-Supervisor: Dr Russell Davenport 2019 Declaration I hereby certify that this work is my own, except where otherwise acknowledged, and that it has not been submitted for a degree at this, or any other, institution. Mathew Robert Brown Abstract Climate change, population growth and increasingly strict environmental regulation means the global water industry is currently facing an unprecedented coincidence of challenges (Palmer, 2010). Better microbial ecology could significantly contribute, since explicitly engineering and maintaining efficient and functionally stable microbial communities would allow existing assets to be optimised and their robustness improved. Given its role in natural systems viral infection could be an important, yet overlooked, factor. Here we attempt to address this lacuna, particularly within activated sludge systems. To facilitate this process we developed, optimised and validated a flow cytometry method, allowing rapid (relative to other methods), accurate and highly reproducible quantification of total free viruses in activated sludge samples (mixed liquor (ML)). Its use spatially identified viruses are highly abundant, with concentrations ranging from 0.59 - 5.14 × 109 viruses mL-1 across 25 activated sludge plants. Subsequently we applied this method to ML collected from one full- and twelve replicate lab-scale activated sludge systems respectively. At both scales viruses in the ML were shown to be both abundant and temporally/spatiotemporally dynamic, thus ever present across activated sludge systems.
    [Show full text]
  • The Project Gutenberg Ebook of Roget's Thesaurus, by Peter Mark Roget
    The Project Gutenberg EBook of Roget's Thesaurus, by Peter Mark Roget Copyright laws are changing all over the world. Be sure to check the copyright laws for your country before downloading or redistributing this or any other Project Gutenberg eBook. This header should be the first thing seen when viewing this Project Gutenberg file. Please do not remove it. Do not change or edit the header without written permission. Please read the "legal small print," and other information about the eBook and Project Gutenberg at the bottom of this file. Included is important information about your specific rights and restrictions in how the file may be used. You can also find out about how to make a donation to Project Gutenberg, and how to get involved. **Welcome To The World of Free Plain Vanilla Electronic Texts** **eBooks Readable By Both Humans and By Computers, Since 1971** *****These eBooks Were Prepared By Thousands of Volunteers!***** Title: Roget's Thesaurus Author: Peter Mark Roget Release Date: December, 1991 [EBook #22] [Most recently updated: January 5, 2004] Edition: 15a Language: English Character set encoding: US-ASCII *** START OF THE PROJECT GUTENBERG EBOOK, ROGET'S THESAURUS *** This is the Project Gutenberg Etext of Roget's Thesaurus No. Two It has not been compared with the roget13.txt so keep both!! This edition should be labeled roget15a.txt or roget15a.zip ************************************************************************* ** Thesaurus-1911 ** ** Version 1.02 (supplemented: July 18, 1991) ** ************************************************************************* <-- An electronic thesaurus derived from the version of Roget's Thesaurus published in 1911. This thesaurus has been prepared by MICRA, Inc. (May 1991).
    [Show full text]
  • T-Even Phage Lysis Inhibition, the Granddaddy of Virus-Virus Intercellular Communication Research
    viruses Review Look Who’s Talking: T-Even Phage Lysis Inhibition, the Granddaddy of Virus-Virus Intercellular Communication Research Stephen T. Abedon Department of Microbiology, The Ohio State University, Mansfield, OH 44906, USA; [email protected] Received: 27 June 2019; Accepted: 30 September 2019; Published: 16 October 2019 Abstract: That communication can occur between virus-infected cells has been appreciated for nearly as long as has virus molecular biology. The original virus communication process specifically was that seen with T-even bacteriophages—phages T2, T4, and T6—resulting in what was labeled as a lysis inhibition. Another proposed virus communication phenomenon, also seen with T-even phages, can be described as a phage-adsorption-induced synchronized lysis-inhibition collapse. Both are mediated by virions that were released from earlier-lysing, phage-infected bacteria. Each may represent ecological responses, in terms of phage lysis timing, to high local densities of phage-infected bacteria, but for lysis inhibition also to locally reduced densities of phage-uninfected bacteria. With lysis inhibition, the outcome is a temporary avoidance of lysis, i.e., a lysis delay, resulting in increased numbers of virions (greater burst size). Synchronized lysis-inhibition collapse, by contrast, is an accelerated lysis which is imposed upon phage-infected bacteria by virions that have been lytically released from other phage-infected bacteria. Here I consider some history of lysis inhibition, its laboratory manifestation, its molecular basis, how it may benefit expressing phages, and its potential ecological role. I discuss as well other, more recently recognized examples of virus-virus intercellular communication. Keywords: arbitrium systems; burst size; latent period; lysis from without; mutual policing; quorum sensing; secondary adsorption; superinfection 1.
    [Show full text]
  • Mls 602 L2 Animal Viruses & Bacteriophages
    MLS 602 L2 ANIMAL VIRUSES & BACTERIOPHAGES TAINA NAIVALU At the end of this lecture you should be able to: • Differentiate between RNA and DNA viruses • Understand the life-cycle of viruses Viral Genome • Either DNA or RNA and never both • DNA viruses have DNA in their genome obviously and the same goes for RNA viruses DNA Viruses • Larger than RNA viruses • Can have • i)Small genome – Use host factors (DNA polymerase in host)for replication • ii)Large genome – Encode a DNA polymerase – More genes encode proteins • Most Replicate in the nucleus to use the host cell DNA-dependent polymerase to synthesize their mRNA (poxvirus replicates in the cytoplasm as it has its own polymerase) Examples of DNA viruses RNA Viruses • Minimal genome size • Encode a limited number of proteins • Often encodes a RNA-dependent RNA polymerase (RdRp) – Essential for replication • Most RNA viruses undergo their entire replication in cytoplasm (except for Retroviruses and Influenza viruses as both have an important replication step in the nucleus) • All RNA viruses are ss except for Reovirus which has ds RNA Examples of RNA viruses VIRUS REPLICATION STRATEGIES • All virus replication occurs within the host cell • Host cell provides: – Nucleotide substrates – Energy – Enzymes – Other proteins • All virus genomes must produce mRNA which can be translated by host ribosomes VIRUS LIFECYCLE • Viruses need to: – Get their genome into the host cell – Produce mRNA; leads to viral protein synthesis • Synthesis of viral mRNA • Synthesis of viral proteins • Synthesis of viral nucleic acid – Replicate their own genome – Assemble new virions and leave the cell – Continue infection The Lifecycle • Attachment.
    [Show full text]
  • Studies Towards the Development of Salmonella-Specific Bacteriophages for Sanitation in the Food Industry
    STUDIES TOWARDS THE DEVELOPMENT OF SALMONELLA-SPECIFIC BACTERIOPHAGES FOR SANITATION IN THE FOOD INDUSTRY MASTERS OF SCIENCE IN BIOTECHNOLOGY SCHOOL OF MOLECULAR AND CELL BIOLOGY Candidate: Angela Hobbs Supervisor: Dr. Steven I. Durbach Co-supervisor: Dr. Denise Lindsay University of the Witwatersrand STUDIES TOWARDS THE DEVELOPMENT OF SALMONELLA-SPECIFIC BACTERIOPHAGES FOR SANITATION IN THE FOOD INDUSTRY Angela Hobbs A research report submitted to the Faculty of Science, University of the Witwatersrand, Johannesburg, in partial fulfilment of the requirement for the degree of Master of Science in Biotechnology. Johannesburg, 2007 DECLARATION I declare that this research report is my own, unaided work. It is being submitted for the degree of Master of Science in Biotechnology in the University of the Witwatersrand, Johannesburg. It has not been submitted before for any degree or examination in any other university. Angela Hobbs Day of March 2007 TABLE OF CONTENTS ABSTRACT……………….…………………...…………………………………I ACKNOWLEDGEMENTS……………………………………………………..II LIST OF FIGURES………….…………………………………………………III LIST OF TABLES………….…………………………………………………..IV ABBREVIATIONS……………….……………………………..………………V CHAPTER ONE 1. INTRODUCTION 1.1 FOODBORNE ILLNESS……………….……………………………………….2 1.2 CLEANING-IN-PLACE SYSTEMS USED IN FOOD PROCESSING………………….6 (i) Detergents……………….………………………………………………. 7 (ii) Chemical sanitizers ……………….……………………………………. 8 1.3 BACTERIAL BIOFILMS IN FOOD PROCESSING………………………………… 9 (i) Biofilm formation on surfaces……………….…………………………..11 (ii) Virulence factors in biofilm
    [Show full text]