Small Mammal Survey of Chiquibul
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The Chocó-Darién Conservation Corridor
July 4, 2011 The Chocó-Darién Conservation Corridor A Project Design Note for Validation to Climate, Community, and Biodiversity (CCB) Standards (2nd Edition). CCB Project Design Document – July 4, 2011 Executive Summary Colombia is home to over 10% of the world’s plant and animal species despite covering just 0.7% of the planet’s surface, and has more registered species of birds and amphibians than any other country in the world. Along Colombia’s northwest border with Panama lies the Darién region, one of the most diverse ecosystems of the American tropics, a recognized biodiversity hotspot, and home to two UNESCO Natural World Heritage sites. The spectacular rainforests of the Darien shelter populations of endangered species such as the jaguar, spider monkey, wild dog, and peregrine falcon, as well as numerous rare species that exist nowhere else on the planet. The Darién is also home to a diverse group of Afro-Colombian, indigenous, and mestizo communities who depend on these natural resources. On August 1, 2005, the Council of Afro-Colombian Communities of the Tolo River Basin (COCOMASUR) was awarded collective land title to over 13,465 hectares of rainforest in the Serranía del Darién in the municipality of Acandí, Chocó in recognition of their traditional lifestyles and longstanding presence in the region. If they are to preserve the forests and their traditional way of life, these communities must overcome considerable challenges. During 2001- 2010 alone, over 10% of the natural forest cover of the surrounding region was converted to pasture for cattle ranching or cleared to support unsustainable agricultural practices. -
March Rice Rat, <I>Oryzomys Palustris</I>
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Mammalogy Papers: University of Nebraska State Museum, University of Nebraska State Museum 1-25-1985 March Rice Rat, Oryzomys palustris Hugh H. Genoways University of Nebraska - Lincoln, [email protected] Follow this and additional works at: http://digitalcommons.unl.edu/museummammalogy Part of the Biodiversity Commons, Terrestrial and Aquatic Ecology Commons, and the Zoology Commons Genoways, Hugh H., "March Rice Rat, Oryzomys palustris" (1985). Mammalogy Papers: University of Nebraska State Museum. 227. http://digitalcommons.unl.edu/museummammalogy/227 This Article is brought to you for free and open access by the Museum, University of Nebraska State at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Mammalogy Papers: University of Nebraska State Museum by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Genoways in Species of Special Concern in Pennsylvania (Genoways & Brenner, editors). Special Publication, Carnegie Museum of Natural History (1985) no. 11. Copyright 1985, Carnegie Museum of Natural History. Used by permission. 402 SPECIAL PUBLICATION CARNEGIE MUSEUM OF NATURAL HISTORY NO. 11 "'-" "~_MARSH RICE RAT (Oryzomys pa!ustris) Status Undetermined MARSH RICE RAT Oryzomys palustris Family Cricetidae Order Rodentia River Valley and in the areas surrounding its prin OTHER NAMES: Rice rat, swamp rice rat, north cipal tributaries (Hall, 1981). ern rice rat. HABITAT: The marsh rice rat is a semi-aquatic DESCRIPTION: A medium-sized rat that would species that is found in greatest abundance in the be most easily confused with smaller individuals of marshes and swamps and other wetlands ofthe Gulf the introduced Norway rat (Rattus norvegicus). -
Downloaded from Ensembl (Www
Lin et al. BMC Genomics 2014, 15:32 http://www.biomedcentral.com/1471-2164/15/32 RESEARCH ARTICLE Open Access Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia) Gong-Hua Lin1, Kun Wang2, Xiao-Gong Deng1,3, Eviatar Nevo4, Fang Zhao1, Jian-Ping Su1, Song-Chang Guo1, Tong-Zuo Zhang1* and Huabin Zhao5* Abstract Background: Subterranean mammals have been of great interest for evolutionary biologists because of their highly specialized traits for the life underground. Owing to the convergence of morphological traits and the incongruence of molecular evidence, the phylogenetic relationships among three subfamilies Myospalacinae (zokors), Spalacinae (blind mole rats) and Rhizomyinae (bamboo rats) within the family Spalacidae remain unresolved. Here, we performed de novo transcriptome sequencing of four RNA-seq libraries prepared from brain and liver tissues of a plateau zokor (Eospalax baileyi) and a hoary bamboo rat (Rhizomys pruinosus), and analyzed the transcriptome sequences alongside a published transcriptome of the Middle East blind mole rat (Spalax galili). We characterize the transcriptome assemblies of the two spalacids, and recover the phylogeny of the three subfamilies using a phylogenomic approach. Results: Approximately 50.3 million clean reads from the zokor and 140.8 million clean reads from the bamboo ratwere generated by Illumina paired-end RNA-seq technology. All clean reads were assembled into 138,872 (the zokor) and 157,167 (the bamboo rat) unigenes, which were annotated by the public databases: the Swiss-prot, Trembl, NCBI non-redundant protein (NR), NCBI nucleotide sequence (NT), Gene Ontology (GO), Cluster of Orthologous Groups (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG). -
Mammal Watching in Northern Mexico Vladimir Dinets
Mammal watching in Northern Mexico Vladimir Dinets Seldom visited by mammal watchers, Northern Mexico is a fascinating part of the world with a diverse mammal fauna. In addition to its many endemics, many North American species are easier to see here than in USA, while some tropical ones can be seen in unusual habitats. I travelled there a lot (having lived just across the border for a few years), but only managed to visit a small fraction of the number of places worth exploring. Many generations of mammologists from USA and Mexico have worked there, but the knowledge of local mammals is still a bit sketchy, and new discoveries will certainly be made. All information below is from my trips in 2003-2005. The main roads are better and less traffic-choked than in other parts of the country, but the distances are greater, so any traveler should be mindful of fuel (expensive) and highway tolls (sometimes ridiculously high). In theory, toll roads (carretera quota) should be paralleled by free roads (carretera libre), but this isn’t always the case. Free roads are often narrow, winding, and full of traffic, but sometimes they are good for night drives (toll roads never are). All guidebooks to Mexico I’ve ever seen insist that driving at night is so dangerous, you might as well just kill yourself in advance to avoid the horror. In my experience, driving at night is usually safer, because there is less traffic, you see the headlights of upcoming cars before making the turn, and other drivers blink their lights to warn you of livestock on the road ahead. -
The Neotropical Region Sensu the Areas of Endemism of Terrestrial Mammals
Australian Systematic Botany, 2017, 30, 470–484 ©CSIRO 2017 doi:10.1071/SB16053_AC Supplementary material The Neotropical region sensu the areas of endemism of terrestrial mammals Elkin Alexi Noguera-UrbanoA,B,C,D and Tania EscalanteB APosgrado en Ciencias Biológicas, Unidad de Posgrado, Edificio A primer piso, Circuito de Posgrados, Ciudad Universitaria, Universidad Nacional Autónoma de México (UNAM), 04510 Mexico City, Mexico. BGrupo de Investigación en Biogeografía de la Conservación, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM), 04510 Mexico City, Mexico. CGrupo de Investigación de Ecología Evolutiva, Departamento de Biología, Universidad de Nariño, Ciudadela Universitaria Torobajo, 1175-1176 Nariño, Colombia. DCorresponding author. Email: [email protected] Page 1 of 18 Australian Systematic Botany, 2017, 30, 470–484 ©CSIRO 2017 doi:10.1071/SB16053_AC Table S1. List of taxa processed Number Taxon Number Taxon 1 Abrawayaomys ruschii 55 Akodon montensis 2 Abrocoma 56 Akodon mystax 3 Abrocoma bennettii 57 Akodon neocenus 4 Abrocoma boliviensis 58 Akodon oenos 5 Abrocoma budini 59 Akodon orophilus 6 Abrocoma cinerea 60 Akodon paranaensis 7 Abrocoma famatina 61 Akodon pervalens 8 Abrocoma shistacea 62 Akodon philipmyersi 9 Abrocoma uspallata 63 Akodon reigi 10 Abrocoma vaccarum 64 Akodon sanctipaulensis 11 Abrocomidae 65 Akodon serrensis 12 Abrothrix 66 Akodon siberiae 13 Abrothrix andinus 67 Akodon simulator 14 Abrothrix hershkovitzi 68 Akodon spegazzinii 15 Abrothrix illuteus -
Socio-Ecology of the Marsh Rice Rat (<I
The University of Southern Mississippi The Aquila Digital Community Faculty Publications 5-1-2013 Socio-ecology of the Marsh Rice Rat (Oryzomys palustris) and the Spatio-Temporal Distribution of Bayou Virus in Coastal Texas Tyla S. Holsomback Texas Tech University, [email protected] Christopher J. Van Nice Texas Tech University Rachel N. Clark Texas Tech University Alisa A. Abuzeineh University of Southern Mississippi Jorge Salazar-Bravo Texas Tech University Follow this and additional works at: https://aquila.usm.edu/fac_pubs Part of the Biology Commons Recommended Citation Holsomback, T. S., Van Nice, C. J., Clark, R. N., Abuzeineh, A. A., Salazar-Bravo, J. (2013). Socio-ecology of the Marsh Rice Rat (Oryzomys palustris) and the Spatio-Temporal Distribution of Bayou Virus in Coastal Texas. Geospatial Health, 7(2), 289-298. Available at: https://aquila.usm.edu/fac_pubs/8826 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Faculty Publications by an authorized administrator of The Aquila Digital Community. For more information, please contact [email protected]. Geospatial Health 7(2), 2013, pp. 289-298 Socio-ecology of the marsh rice rat (Oryzomys palustris) and the spatio-temporal distribution of Bayou virus in coastal Texas Tyla S. Holsomback1, Christopher J. Van Nice2, Rachel N. Clark2, Nancy E. McIntyre1, Alisa A. Abuzeineh3, Jorge Salazar-Bravo1 1Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA; 2Department of Economics and Geography, Texas Tech University, Lubbock, TX 79409, USA; 3Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406, USA Abstract. -
With Focus on the Genus Handleyomys and Related Taxa
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2015-04-01 Evolution and Biogeography of Mesoamerican Small Mammals: With Focus on the Genus Handleyomys and Related Taxa Ana Villalba Almendra Brigham Young University - Provo Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Biology Commons BYU ScholarsArchive Citation Villalba Almendra, Ana, "Evolution and Biogeography of Mesoamerican Small Mammals: With Focus on the Genus Handleyomys and Related Taxa" (2015). Theses and Dissertations. 5812. https://scholarsarchive.byu.edu/etd/5812 This Dissertation is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Evolution and Biogeography of Mesoamerican Small Mammals: Focus on the Genus Handleyomys and Related Taxa Ana Laura Villalba Almendra A dissertation submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Doctor of Philosophy Duke S. Rogers, Chair Byron J. Adams Jerald B. Johnson Leigh A. Johnson Eric A. Rickart Department of Biology Brigham Young University March 2015 Copyright © 2015 Ana Laura Villalba Almendra All Rights Reserved ABSTRACT Evolution and Biogeography of Mesoamerican Small Mammals: Focus on the Genus Handleyomys and Related Taxa Ana Laura Villalba Almendra Department of Biology, BYU Doctor of Philosophy Mesoamerica is considered a biodiversity hot spot with levels of endemism and species diversity likely underestimated. For mammals, the patterns of diversification of Mesoamerican taxa still are controversial. Reasons for this include the region’s complex geologic history, and the relatively recent timing of such geological events. -
New Species of Red-Backed Vole (Mammalia: Rodentia: Cricetidae) in Fauna of Russia: Molecular and Morphological Evidences
Proceedings of the Zoological Institute RAS Vol. 313, No. 1, 2009, рр. 3–9 УДК 599.323.4(5-012) NEW SPECIES OF RED-BACKED VOLE (MAMMALIA: RODENTIA: CRICETIDAE) IN FAUNA OF RUSSIA: MOLECULAR AND MORPHOLOGICAL EVIDENCES N.I. Abramson, A.V. Abramov and G.I. Baranova Zoological Institute of the Russian Academy of Sciences, Universitetskaya Emb., 1, St. Petersburg, 199034, Russia, e-mail: [email protected] ABSTRACT The new species for the fauna of Russia, Hokkaido red-backed vole (Myodes rex), has been identified at the south of Sakhalin Island (Dolinsk District). Its identification was reliably confirmed by molecular and morphological methods. Undoubtedly, this species is much more widespread in islands of the Far East. Some records of M. sikotanensis from Sakhalin including the so-called “microtinus” form, actually, should be reidentified as M. rex. The voles with complex molars from Shikotan Island and probably those from Zelenyi (= Sibotsu) Island also belong to M. rex. Key words: Myodes rex, mitochondrial DNA, Sakhalin, teeth pattern РЕЗЮМЕ На южной оконечности о. Сахалин (Долинский р-н) обнаружен новый для фауны России вид рыжих полевок – Myodes rex. Достоверность определения этого вида подтверждена как молекулярным, так и морфологическим методами. Несомненно, этот вид имеет более широкое распространение на островах Дальнего Востока. Часть находок M. sikotanensis с о. Сахалин, включая и т.н. форму “microtinus”, долж- ны быть переопределены как M. rex. Полевки со сложным строением зубов с о. Шикотан и, вероятно, с о. Зеленый (= Шиботцу) также должны быть отнесены к M. rex. INTRODUCTION During the mammalogical survey in Sakhalin Island in 2008, we collected M. -
Diversification of Muroid Rodents Driven by the Late Miocene Global Cooling Nelish Pradhan University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2018 Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling Nelish Pradhan University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Biochemistry, Biophysics, and Structural Biology Commons, Evolution Commons, and the Zoology Commons Recommended Citation Pradhan, Nelish, "Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling" (2018). Graduate College Dissertations and Theses. 907. https://scholarworks.uvm.edu/graddis/907 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. DIVERSIFICATION OF MUROID RODENTS DRIVEN BY THE LATE MIOCENE GLOBAL COOLING A Dissertation Presented by Nelish Pradhan to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology May, 2018 Defense Date: January 8, 2018 Dissertation Examination Committee: C. William Kilpatrick, Ph.D., Advisor David S. Barrington, Ph.D., Chairperson Ingi Agnarsson, Ph.D. Lori Stevens, Ph.D. Sara I. Helms Cahan, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT Late Miocene, 8 to 6 million years ago (Ma), climatic changes brought about dramatic floral and faunal changes. Cooler and drier climates that prevailed in the Late Miocene led to expansion of grasslands and retreat of forests at a global scale. -
Life History Account for Hispid Cotton
California Wildlife Habitat Relationships System California Department of Fish and Wildlife California Interagency Wildlife Task Group HISPID COTTON RAT Sigmodon hispidus Family: MURIDAE Order: RODENTIA Class: MAMMALIA M123 Written by: P. Brylski Reviewed by: H. Shellhammer Edited by: R. Duke DISTRIBUTION, ABUNDANCE, AND SEASONALITY In California, occurs only along the Colorado River and in the Imperial Valley. Establishment of cotton rats in the Imperial Valley apparently was in response to agricultural irrigation practices (Dixon 1922). Most common in grassland and cropland habitats near water (Fleharty and Mares 1973, Kaufman and Fleharty 1974), including grass-forb understories in early successional stages of other habitats (McClenaghan and Gaines 1978). Also occurs in overgrown clearings, and herbaceous borders of fields and brushy areas (Hall and Dalquest 1963). SPECIFIC HABITAT REQUIREMENTS Feeding: Feeds mainly on grasses, eating insects seasonally. Food is not stored. Runways are made through dense herbaceous growth, and are similar in appearance to vole runways but much larger. Sometimes feeds on sugar beets, citrus, and other crops. Cover: Tall, dense grass is preferred. Reproduction: Nests of woven grass are constructed either in burrows or on the surface (Baar et al. 1974). Water: No data found, but probably requires free water. Pattern: Grasslands, overgrown clearings and herbaceous borders of fields, and brushy areas are preferred. SPECIES LIFE HISTORY Activity Patterns: Both nocturnal and diurnal, with bimodal nocturnal activity pattern (Kilduff and Dube 1979). Active yearlong. Seasonal Movements/Migration: None. Home Range: Home range averaged 0.35 to 0.39 ha (0.86 to 0.96 ac) for males, and 0.22 ha (0.54 ac) for females (Fleharty and Mares 1973, Layne 1974). -
Rodent Pests in Cowmbian Agriculture
RODENT PESTS IN COWMBIAN AGRICULTURE DANILO VALENCIA, Agronomist, Instituto Colombiano Agropecuario (ICA), Palmira, Colombia. DONALD J. ELIAS, Biologist, USDA/APHIS/Denver Wildlife Research Center, Denver, Colorado. JORGE A. OSPINA, Economist, MINAGRO LTDA., Bogota, Colombia. ABSTRACT: The tropical zones of Latin America are sources of a great faunal richness. A significant number of mammals are associated with damage to the agricultural and livestock industries of Colombia. Some studies have indicated that rodents cause serious economic and social damage in the agricultural, livestock, and stored product sectors of the Colombian economy. Evaluations of this damage have been based on three criteria: 1) the characteristics of the damage; 2) the species of rodent involved; and 3) the loss of production at harvest. Cereals and oil-producing crops are most affected as standing crops; in the livestock area, poultry and pork production are most affected; many agricultural products, especially grains, are attacked by rodents during the post-harvest stage. The level of economic loss caused by rodents can range from about 4 % to about 50 % depending on the crop, the season, and the species of rodent involved in the damage. Social damages are characterized by the transmission of illnesses such as salmonellosis and leptospirosis via contaminated foods or grains. Six species of rodents of the families Cricetidae and Muridae are most commonly associated with these problems in Colombia. Proc. 16th Vcrtcbr. Pest Conf. (W.S. Halvcnon & A.C. Crabb, Eds.) Published at Univ. of Calif., Davis. 1994. INTRODUCTION stage. Social damages are characterized by the The tropical beh of Latin America has a significant transmission of illnesses via contaminated foods or grains. -
Kangaroo Rat and Pocket Mouse
Shrew Family Order Rodentia (Soricoidae) masked shrew vagrant shrew water shrew Sorex cinereus Sorex vagrans Sorex palustris grassland streambank streambank Mouse, Vole, Rats, and Muskrat (Cricetidae) meadow vole long-tailed vole heather vole Microtus pennsylvanicu Microtus longicaudus Phenacomys intermedius grassland streambank streambank/grassland/mountain Gapper’s red-backed vole deer mouse Western harvest mouse Clethrionomys gapperi Peromycus maniculatus Reithrodontomys megalotis mountain mountain/streambank grassland bushy-tailed woodrat Neotoma cinerea mountain rock mouse Northern grasshopper mouse Peromyscus difficilis Onychomys leucogaster mountain grassland Jumping Mouse Kangaroo Rat and Family Pocket Mouse silky pocket mouse (Zapodidae) (Heteromyidae) Perognathus flavus desert Western jumping mouse Ord’s kangaroo rat Apache pocket mouse Zapus princeps Dipodomys ordii Perognathus apache streambank desert mountain 1:1 0 1 2 3 4 5 6 inches 1 - Rodents Tracks are actual size. Pocket Gopher Porcupine Family Order Rodentia Family (Erethizonidae) (Geomyidae) Beaver Family (Castoridae) porcupine Erethizon dorsatum mountains/grasslands scale 1:3 beaver Castor canadensis streams/lakes/wetlands Northern pocket gopher scale 1:3 Thomomys talpoides grasslands scale 1:1 1:3 0 1 2 3 4 5 6 inches Squirrel Family (Sciuridae) least chipmunk Colorado chipmunk chicaree Eutamias minimus Eutamias quadrivittatus Tamiasciurus douglassi mountain/grassland mountain forest Abert’s squirrel Sciurus aberti kaibabensis mountain/forest rock ground squirrel golden-mantled ground Spermophilus variegatus squirrel mountain Spermophilus lateralis streambank yellow-bellied marmot Gunnison’s prairie dog thirteen-lined ground squirrel Marmota flaviventris Cynomys gunnisoni Spermophilus tridecemlineatus mountain/rockslide grassland grassland 1:1 0 1 2 3 4 5 6 inches 2 - Rodents Rodentia tracks vary in size. Sciuridae tracks are actual size.