Qingxin Kaiqiao Fang Inhibits Aβ25-35-Induced Apoptosis In

Total Page:16

File Type:pdf, Size:1020Kb

Qingxin Kaiqiao Fang Inhibits Aβ25-35-Induced Apoptosis In Hindawi Evidence-Based Complementary and Alternative Medicine Volume 2020, Article ID 9058135, 14 pages https://doi.org/10.1155/2020/9058135 Research Article Qingxin Kaiqiao Fang Inhibits Aβ25-35-Induced Apoptosis in Primary Cultured Rat Hippocampal Neuronal Cells via the p38 MAPK Pathway: An Experimental Validation and Network Pharmacology Study Tian-Qi Wang,1,2 Xiao-Xiao Lai,1,2 Lu-Ting Xu,1,2 Yan Shen,1,2 Jian-Wei Lin,1,2 Shi-Yu Gao,1,2 and Hai-Yan Hu 1,2 1 e Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical University, 109 Xue Yuan Xi Road, Lu Cheng District, Wenzhou 325000, China 2 e Second Clinical College, Wenzhou Medical University, Wenzhou 325003, China Correspondence should be addressed to Hai-Yan Hu; [email protected] Received 5 April 2020; Revised 7 July 2020; Accepted 13 July 2020; Published 4 August 2020 Academic Editor: Yoshiki Mukudai Copyright © 2020 Tian-Qi Wang et al. 0is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Qingxin kaiqiao fang (QKF), a traditional Chinese medicine compound, has been applied to treat Alzheimer’s disease (AD) for many years and has exhibited remarkable effects. However, the underlying mechanism is still not explicit. 0e current study aims to investigate whether QKF exerts an antiapoptotic role through the p38 MAPK pathway in the course of AD. Network pharmacology analysis was applied to study the effective components, possible therapeutic targets, and AD-related pathway of QKF. Further, the AD cell model was established using amyloid-beta (Aβ)25-35 peptide and primary hippocampal neuronal cells extracted from newborn Sprague-Dawley rats. Microtubule-associated protein-2 (MAP-2) imaging was used to detect the morphology of hippocampal neurons. Western blot (WB) analysis was applied to detect the protein expression levels of p38 MAPK, p-p38 MAPK, Bcl-2, Bax, caspase-3, and cleaved caspase-3. Cell viability and apoptosis were determined using cell counting kit-8 (CCK-8) and terminal deoxynucleotidyl transferase-mediated dUTP nick end-labeling (TUNEL) assays, re- spectively. SB203580 and U46619 were used to detect changes in cell morphology, cell viability, and apoptosis upon inhibiting or activating p38 MAPK. Our present work showed that QKF protects hippocampal neuronal morphology, enhances cell viability, and reduces the number of TUNEL-positive cells. In addition, our results showed that QKF increased the expression levels of antiapoptotic proteins and decreased the expression of proapoptotic proteins. QKF at 25 mg·mL−1 best inhibited neuronal apoptosis among the three doses of QKF by suppressing p38 MAPK activity. Collectively, QKF plays an antiapoptotic role via the p38 MAPK pathway. 1. Introduction aggregation and deposition of amyloid-beta (Aβ) fragments, the main component of SP. Among the Aβ fragments As a serious neurodegenerative disease in aged individuals, studied to date, Aβ 25-35 is the shortest, but it retains the Alzheimer’s disease (AD) is characterized by the formation toxicity of the full-length peptide and exhibits a significant of intracellular neurofibrillary tangles, extracellular deposits level of molecular aggregation [3, 4]. Evidence suggests that of senile plaques (SP), and the loss of neurons [1]. It is the excessive deposition of Aβ in the hippocampus leads to generally accepted that the apoptosis-induced death of a changes in nerve function and eventually cognitive dys- large number of neurons is a common feature in the brains function, as the hippocampus is one of the most delicate of patients with AD [2]. 0is programmed cell death can be areas in the brain and primarily responsible for learning and induced by multiple factors, one of which is the abnormal memory [5]. Moreover, some studies have shown that 2 Evidence-Based Complementary and Alternative Medicine hippocampal neuronal damage induced by Aβ can be me- which the network degrees and betweenness were greater diated by the regulation of p38 mitogen-activated protein than the mean values. kinase (p38 MAPK) [6, 7]. A member of the MAPK family, p38 MAPK, is closely related to the regulation of cell pro- liferation, differentiation, survival, and death. Recent studies 2.3. Gene Pathway and Functional Analysis. 0e core target have found that its phosphorylation is markedly increased in genes were identified using the DAVID database (http:// both the hippocampi of AD rats and in cultured neurons david.nifcrf.gov/). 0e signaling pathways and biological [8, 9]. In addition, p38 MAPK activation leads to pro- processes of QKF relevant to the treatment of AD were grammed neuronal cell death primarily through alterations analyzed by gene ontology (GO) enrichment analysis (http:// in the expression of proteins involved in apoptosis, including www.geneontology.org) and the Kyoto Encyclopedia of caspase-3, the antiapoptotic protein regulator Bcl2, and the Genes and Genomes (KEGG) pathway enrichment analysis proapoptotic protein regulator Bax [10]. In view of the role (http://www.kegg.jp/) (P ≤ 0:01). of p38 MAPK in apoptosis, SB203580, a direct inhibitor of p38 MAPK, and U46619, an agonist of p38 MAPK, are 2.4. Main Reagents. Poly-L-lysine (PLL) (10x) was pur- currently applied by many researchers to assess whether the chased from Beijing Solarbio Science and Technology Co., antiapoptotic role of p38 MAPK is mediated by its sup- Ltd. (Beijing, China). DMEM/F12 (1 :1), Neurobasal Plus pression [11, 12]. Qingxin kaiqiao fang (QKF), which is Medium, B27 Plus Supplement (50x), HBSS (1x), FBS, and based on Fumanjian, a notable traditional Chinese medicine 0.25% trypsin were obtained from Gibco (Grand Island, New compound from Jingyue Quanshu that was first described by York, USA). 0e Aβ25-35 fragment and dimethyl sulfoxide Zhang Jingyue during the Ming Dynasty, is made mainly (DMSO) were purchased from Sigma (St. Louis, MO, USA). from Radix Rehmanniae (Sheng Di Huang), Radix Paeoniae Donepezil hydrochloride, SB203580, and U46619 were ob- Alba (Bai Shao), Radix Ophiopogonis (Mai dong), Cortex tained from Santa Cruz Biotechnology Inc. (Delaware, Moutan Radicis (Mu dan pi), Poria cocos (Fu Ling), Herba USA). L-Glutamine was obtained from 0ermo Fisher Dendrobii Rhizoma (Shi Hu), Rhizoma Acori Tatarinowii (Massachusetts, USA). 0e rabbit polyclonal antibodies (Shi Chang Pu), Rhizoma Anemarrhenae (Zhi mu), Soph- against MAP2 were purchased from Proteintech Group, Inc. orae Flavescentis (Ku Shen), and Pericarpium Citri Retic- (Chicago, USA). Rabbit monoclonal antibodies against p38 ulatae (Chenpi). A network pharmacology analysis, which MAPK, p-p38 MAPK, caspase-3, cleaved caspase-3, and Bax integrates high-throughput data integration, database re- were purchased from Cell Signaling Technology (Beverly, trieval, data mining, target prediction, laboratory simula- MA, USA). 0e primary antibody against Bcl-2 was pur- tions, and other research methods [13], was applied in this chased from Abcam (Cambridge, UK). Horseradish per- study to reveal the complex mechanism of QKF in the oxidase- (HRP-) conjugated IgG secondary antibody was treatment of AD. purchased from Beijing Bioss Biotechnology Co., Ltd. (Beijing, China), and the BCA protein assay kit was obtained 2. Materials and Methods from Beyotime Biotechnological Technology Co., Ltd. (Shanghai, China). 2.1. Active Ingredients Screening and Targets Identification. 0e BATMAN-TCM database (a bioinformatics analysis tool for determining the molecular mechanism of TCM) 2.5. Preparation of QKF and Aβ25-35. QKF is composed of 10 (http://bionet.ncpsb.org/batman-tcm/) was used to search herbs: Radix Rehmanniae (Sheng Di Huang), Radix Paeo- for the compounds contained in QKF. Further, we predicted niae Alba (Bai Shao), Radix Ophiopogonis (Mai dong), the potential targets of the above drugs based on the Cortex Moutan Radicis (Mu dan pi), Poria cocos (Fu Ling), BATMAN-TCM database and set a target score≥20 as the Herba Dendrobii Rhizoma (Shi Hu), Rhizoma Acori threshold for targets. Afterward, a “QKF-compound-target” Tatarinowii (Shi Chang Pu), Rhizoma Anemarrhenae (Zhi network was constructed and analyzed using Cytoscape 3.7.2 mu), Sophorae Flavescentis (Ku Shen), and Pericarpium software. AD-related targets were retrieved from the fol- Citri Reticulatae (Chenpi), all of which are recorded in the lowing five databases, namely, Online Mendelian Inheri- Chinese Pharmacopoeia, as being present in QKF at a ratio tance in Man (OMIM; https://www.omim.org/), PharmGKB of 2 : 2: 2 : 2: 2 : 2: 2 :1.5 :1.5 :1 on a dry-weight basis, re- (http://www.pharmgkc.org/), GeneCards (http://www. spectively. All herbs were provided by the Second Affiliated genecards.org/), GAD (https://geneticassociationdb.nih. Hospital of Wenzhou Medical University and verified by the gov/), and KEGG (http://www.kegg.jp/) databases. Department of Chinese Materia Medical of Wenzhou Medical University. To make the 1 g·mL−1 stock solution, the raw herbs were decocted with 10 times the volume of dis- 2.2. Network Establishment. 0e drug-related targets and tilled water, extracted twice, filtered, and concentrated, and disease targets were standardized by using the UniProt the drug stocks were then sterilized in an autoclave database. 0e String database (https://string-db.rog/) was (Panasonic Co., Ltd. Tokyo, Japan; MLS-3751L) and stored ° used to analyze protein-protein interactions (PPIs). After- at 4 C until use. 0e Aβ25-35 peptide was dissolved in DMSO ward, the network analyzer function of Cytoscape 3.7.2 at a concentration of 100 μmol L−1 and then placed in a 37°C software was used to analyze the network parameters. 0e thermostat water bath three days prior to use. Prior to use, it topological analysis was used to identify the key genes for was diluted to 10 μmol L−1 with a maintenance medium. Evidence-Based Complementary and Alternative Medicine 3 2.6. Primary Hippocampal Neuron Cultures. One-day-old culture, the neurons were washed with PBS three times Sprague-Dawley (5-6 g) rats were purchased from Beijing (5 min each time), fixed with 4% paraformaldehyde for Vital River Laboratory Animal Technology Co., Ltd.
Recommended publications
  • Nucleotide Sequence and Analysis of the 58.3 to 65.5-Kb Early Region of Bacteriophage T4
    Volume 14 Number 21 1986 Nucleic Acids Research Nucleotide sequence and analysis of the 58.3 to 65.5-kb early region of bacteriophage T4 Kristoffer Valerie 13.4, John Stevens', Mark Lynch'5, Earl E.Henderson12 and Jon K.de Riel1 'Fels Research Institute, and 2Department of Microbiology and Immunology, Temple University School of Medicine, Philadelphia, PA 19140, USA and 3Department of Biochemistry and Biotechnology, Royal Institute of Technology, S-100 44 Stockholm, Sweden Received 21 July 1986; Revised and Accepted 30 September 1986 ABSTRACT The complete 7.2-kb nucleotide sequence from the 58.3 to 65.5-kb early region of bacteriophage T4 has been determined by Maxam and Gilbert sequencing. Computer analysis revealed at least 20 open reading frames (ORFs) within this sequence. All major ORFs are transcribed from the left strand, suggesting that they are expressed early during infection. Among the ORFs, we have identified the pIIII, II, denV and tk genes. The ORFs are very tightly spaced, even over Lapping in some instances, and when ORF interspacing occurs, promoter-like sequences can be implicated. Several of the sequences preceding the ORFs, in particular those at ipIII, ipII, denV, and orf6l.9, can potentially form stable stem-loop structures. INTRODUCTION Recently, considerable progress has been made studying the bacteriophage T4 genome at the molecular level due to the development of T4 strains with unmod- ified DNA suitable for digestion with restriction endonucleases (1). Many T4 genes have since been cloned, sequenced, and their gene products overproduced in Escherichia coli (for review see ref. 2). A majority of the T4 genes studied so far have been essential and non-essential genes with well-characterized pheno- types.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • 4-6 Weeks Old Female C57BL/6 Mice Obtained from Jackson Labs Were Used for Cell Isolation
    Methods Mice: 4-6 weeks old female C57BL/6 mice obtained from Jackson labs were used for cell isolation. Female Foxp3-IRES-GFP reporter mice (1), backcrossed to B6/C57 background for 10 generations, were used for the isolation of naïve CD4 and naïve CD8 cells for the RNAseq experiments. The mice were housed in pathogen-free animal facility in the La Jolla Institute for Allergy and Immunology and were used according to protocols approved by the Institutional Animal Care and use Committee. Preparation of cells: Subsets of thymocytes were isolated by cell sorting as previously described (2), after cell surface staining using CD4 (GK1.5), CD8 (53-6.7), CD3ε (145- 2C11), CD24 (M1/69) (all from Biolegend). DP cells: CD4+CD8 int/hi; CD4 SP cells: CD4CD3 hi, CD24 int/lo; CD8 SP cells: CD8 int/hi CD4 CD3 hi, CD24 int/lo (Fig S2). Peripheral subsets were isolated after pooling spleen and lymph nodes. T cells were enriched by negative isolation using Dynabeads (Dynabeads untouched mouse T cells, 11413D, Invitrogen). After surface staining for CD4 (GK1.5), CD8 (53-6.7), CD62L (MEL-14), CD25 (PC61) and CD44 (IM7), naïve CD4+CD62L hiCD25-CD44lo and naïve CD8+CD62L hiCD25-CD44lo were obtained by sorting (BD FACS Aria). Additionally, for the RNAseq experiments, CD4 and CD8 naïve cells were isolated by sorting T cells from the Foxp3- IRES-GFP mice: CD4+CD62LhiCD25–CD44lo GFP(FOXP3)– and CD8+CD62LhiCD25– CD44lo GFP(FOXP3)– (antibodies were from Biolegend). In some cases, naïve CD4 cells were cultured in vitro under Th1 or Th2 polarizing conditions (3, 4).
    [Show full text]
  • Zbtb16 Regulates Social Cognitive Behaviors and Neocortical
    Usui et al. Translational Psychiatry (2021) 11:242 https://doi.org/10.1038/s41398-021-01358-y Translational Psychiatry ARTICLE Open Access Zbtb16 regulates social cognitive behaviors and neocortical development Noriyoshi Usui 1,2,3,4, Stefano Berto5,AmiKonishi1, Makoto Kondo1,4, Genevieve Konopka5,HideoMatsuzaki 2,6,7 and Shoichi Shimada1,2,4 Abstract Zinc finger and BTB domain containing 16 (ZBTB16) play the roles in the neural progenitor cell proliferation and neuronal differentiation during development, however, how the function of ZBTB16 is involved in brain function and behaviors unknown. Here we show the deletion of Zbtb16 in mice leads to social impairment, repetitive behaviors, risk- taking behaviors, and cognitive impairment. To elucidate the mechanism underlying the behavioral phenotypes, we conducted histological analyses and observed impairments in thinning of neocortical layer 6 (L6) and a reduction of TBR1+ neurons in Zbtb16 KO mice. Furthermore, we found increased dendritic spines and microglia, as well as developmental defects in oligodendrocytes and neocortical myelination in the prefrontal cortex (PFC) of Zbtb16 KO mice. Using genomics approaches, we identified the Zbtb16 transcriptome that includes genes involved in neocortical maturation such as neurogenesis and myelination, and both autism spectrum disorder (ASD) and schizophrenia (SCZ) pathobiology. Co-expression networks further identified Zbtb16-correlated modules that are unique to ASD or SCZ, respectively. Our study provides insight into the novel roles of ZBTB16 in behaviors and neocortical development related to the disorders. 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; Introduction identified as a causative mutation for skeletal defects, ZBTB16 (PLZF) encodes a transcription factor, which genital hypoplasia, and mental retardation (SGYMR)6,7.
    [Show full text]
  • Transcriptional Regulation Differs in Affected Facioscapulohumeral Muscular Dystrophy Patients Compared to Asymptomatic Related Carriers
    University of Massachusetts Medical School eScholarship@UMMS Wellstone Center for FSHD Publications Wellstone Center for FSHD 2009-04-14 Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers Patricia Arashiro University of Sao Paulo Et al. Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/wellstone_pubs Part of the Cell Biology Commons, Developmental Biology Commons, Molecular Biology Commons, Molecular Genetics Commons, Musculoskeletal Diseases Commons, and the Nervous System Diseases Commons Repository Citation Arashiro P, Eisenberg I, Kho AT, Cerqueira AM, Canovas M, Silva HC, Pavanello RC, Verjovski-Almeida S, Kunkel LM, Zatz M. (2009). Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers. Wellstone Center for FSHD Publications. https://doi.org/10.1073/pnas.0901573106. Retrieved from https://escholarship.umassmed.edu/ wellstone_pubs/18 This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in Wellstone Center for FSHD Publications by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers Patricia Arashiroa, Iris Eisenbergb, Alvin T. Khoc, Antonia M. P. Cerqueiraa, Marta
    [Show full text]
  • Alterations of Genetic Variants and Transcriptomic Features of Response to Tamoxifen in the Breast Cancer Cell Line
    Alterations of Genetic Variants and Transcriptomic Features of Response to Tamoxifen in the Breast Cancer Cell Line Mahnaz Nezamivand-Chegini Shiraz University Hamed Kharrati-Koopaee Shiraz University https://orcid.org/0000-0003-2345-6919 seyed taghi Heydari ( [email protected] ) Shiraz University of Medical Sciences https://orcid.org/0000-0001-7711-1137 Hasan Giahi Shiraz University Ali Dehshahri Shiraz University of Medical Sciences Mehdi Dianatpour Shiraz University of Medical Sciences Kamran Bagheri Lankarani Shiraz University of Medical Sciences Research Keywords: Tamoxifen, breast cancer, genetic variants, RNA-seq. Posted Date: August 17th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-783422/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/33 Abstract Background Breast cancer is one of the most important causes of mortality in the world, and Tamoxifen therapy is known as a medication strategy for estrogen receptor-positive breast cancer. In current study, two hypotheses of Tamoxifen consumption in breast cancer cell line (MCF7) were investigated. First, the effect of Tamoxifen on genes expression prole at transcriptome level was evaluated between the control and treated samples. Second, due to the fact that Tamoxifen is known as a mutagenic factor, there may be an association between the alterations of genetic variants and Tamoxifen treatment, which can impact on the drug response. Methods In current study, the whole-transcriptome (RNA-seq) dataset of four investigations (19 samples) were derived from European Bioinformatics Institute (EBI). At transcriptome level, the effect of Tamoxifen was investigated on gene expression prole between control and treatment samples.
    [Show full text]
  • Identification of Novel Nasopharyngeal Carcinoma
    Imaging, Diagnosis, Prognosis Identification of Novel Nasopharyngeal Carcinoma Biomarkers by Laser Capture Microdissection and Proteomic Analysis Ai-Lan Cheng,1, 3 Wei-Guo Huang,1, 3 Zhu-Chu Chen,1, 2 Fang Peng,1Peng-Fei Zhang,1Mao-Yu Li,1 Feng Li,1, 2 Jian-Ling Li,1Cui Li,1Hong Yi,1Bin Yi,1and Zhi-Qiang Xiao1 Abstract Purpose: To identify novel nasopharyngeal carcinoma (NPC) biomarkers by laser capture microdissection and a proteomic approach. Experimental Design: Proteins from pooled microdissected NPC and normal nasopharyngeal epithelial tissues (NNET) were separated by two-dimensional gel electrophoresis, and differential proteins were identified by mass spectrometry. Expression of three differential proteins (stathmin, 14 -3 -3j, and annexin I) in the above two tissues as well as four NPC cell lines was determined by Western blotting. Immunohistochemistry was also done to detect the expression ofthree differential proteins in 98 cases of primary NPC, 30 cases of NNET, and 20 cases of cervical lymph node metastases, and the correlation oftheir expression levels with clinicopathologic features and clinical outcomes were evaluated. Results: Thirty-six differential proteins between the NPC and NNET were identified. The expression levels ofstathmin, 14-3-3 j, and annexin I in the two types oftissues were confirmed and related to differentiation degree and/or metastatic potential of the NPC cell lines. Significant stathmin up-regulation and down-regulation of14-3-3 j and annexin I were observed in NPC versus NNET, and significant down-regulation of 14-3-3j and annexin I was also observed in lymph node metastasis versus primary NPC. In addition, stathmin up-regulation and down- regulation of14-3-3 j and annexin I were significantly correlated with poor histologic differentiation, advanced clinical stage, and recurrence, whereas down-regulation of 14-3-3j and annexin I was also significantly correlated with lymph node and distant metastasis.
    [Show full text]
  • Salty Taste Deficits in CALHM1 Knockout Mice M
    Donald and Barbara Zucker School of Medicine Journal Articles Academic Works 2014 Salty Taste Deficits in CALHM1 Knockout Mice M. G. Tordoff H. T. Ellis T. R. Aleman A. Downing P. Marambaud Northwell Health See next page for additional authors Follow this and additional works at: https://academicworks.medicine.hofstra.edu/articles Part of the Medical Molecular Biology Commons Recommended Citation Tordoff M, Ellis H, Aleman T, Downing A, Marambaud P, Foskett ,J Dana R, McCaughey S. Salty Taste Deficits in CALHM1 Knockout Mice. 2014 Jan 01; 39(6):Article 2870 [ p.]. Available from: https://academicworks.medicine.hofstra.edu/articles/2870. Free full text article. This Article is brought to you for free and open access by Donald and Barbara Zucker School of Medicine Academic Works. It has been accepted for inclusion in Journal Articles by an authorized administrator of Donald and Barbara Zucker School of Medicine Academic Works. For more information, please contact [email protected]. Authors M. G. Tordoff, H. T. Ellis, T. R. Aleman, A. Downing, P. Marambaud, J. K. Foskett, R. M. Dana, and S. A. McCaughey This article is available at Donald and Barbara Zucker School of Medicine Academic Works: https://academicworks.medicine.hofstra.edu/articles/2870 Chem. Senses 39: 515–528, 2014 doi:10.1093/chemse/bju020 Advance Access publication May 20, 2014 Salty Taste Deficits in CALHM1 Knockout Mice Michael G. Tordoff1, Hillary T. Ellis1, Tiffany R. Aleman1, Arnelle Downing1, Philippe Marambaud2, J. Kevin Foskett3, Rachel M. Dana4 and Stuart
    [Show full text]
  • 1.3 the CRAC Channel
    CRAC channel related proteins in the pathogenesis of inborn errors of immunity Laura Jane Rice Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Medicine and Health Under the supervision of Rashida Anwar PhD and Sinisa Savic MD, PhD June 2021 Publication statement The candidate confirms that the work submitted is her own, except where work which has formed part of jointly-authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. The right of Laura Jane Rice to be identified as Author of this work has been asserted by her in accordance with the Copyright, Designs and Patents Act 1988. © 2021 The University of Leeds and Laura Jane Rice ii Acknowledgements This work was funded by University of Leeds and CSL Behring (West Sussex, UK). I would like to thank my supervisors for their continued support. Rashida Anwar for her scientific knowledge, detail driven questions and help during the writing of this thesis. Sinisa Savic for his encouragement and clinical and immunology expertise. The Anwar group and Level 9 WTBB PhD students made this experience enjoyable with coffee and gin. I was fortunate to have collaborators with experience in CRAC channel research.
    [Show full text]
  • Functional Analogy in Human Metabolism: Enzymes with Different Biological Roles Or Functional Redundancy?
    GBE Functional Analogy in Human Metabolism: Enzymes with Different Biological Roles or Functional Redundancy? Rafael Mina Piergiorge1, Antonio Basılio de Miranda2, Ana Carolina Guimaraes~ 1,*, and Marcos Catanho1 1Laboratorio de Genoˆ mica Funcional e Bioinformatica, Fiocruz, Instituto Oswaldo Cruz, Manguinhos, Rio de Janeiro, Brazil 2Laboratorio de Biologia Computacional e Sistemas, Fiocruz, Instituto Oswaldo Cruz, Manguinhos, Rio de Janeiro, Brazil *Corresponding author: E-mail: carolg@fiocruz.br. Accepted: July 4, 2017 Abstract Since enzymes catalyze almost all chemical reactions that occur in living organisms, it is crucial that genes encoding such activities are correctly identified and functionally characterized. Several studies suggest that the fraction of enzymatic activities in which multiple events of independent origin have taken place during evolution is substantial. However, this topic is still poorly explored, and a comprehensive investigation of the occurrence, distribution, and implications of these events has not been done so far. Fundamental questions, such as how analogous enzymes originate, why so many events of independent origin have apparently occurred during evolution, and what are the reasons for the coexistence in the same organism of distinct enzymatic forms catalyzing the same reaction, remain unanswered. Also, several isofunctional enzymes are still not recognized as nonhomologous, even with substantial evidence indicating different evolutionary histories. In this work, we begin to investigate the biological significance of the cooccur- rence of nonhomologous isofunctional enzymes in human metabolism, characterizing functional analogous enzymes identified in metabolic pathways annotated in the human genome. Our hypothesis is that the coexistence of multiple enzymatic forms might not be interpreted as functional redundancy. Instead, these enzymatic forms may be implicated in distinct (and probably relevant) biological roles.
    [Show full text]
  • Anti-CALHM1 Antibody (ARG56385)
    Product datasheet [email protected] ARG56385 Package: 100 μl anti-CALHM1 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes CALHM1 Tested Reactivity Hu, Rat Tested Application IHC-P, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name CALHM1 Antigen Species Human Immunogen Recombinant protein of Human CALHM1 Conjugation Un-conjugated Alternate Names FAM26C; Calcium homeostasis modulator protein 1; Protein FAM26C Application Instructions Application table Application Dilution IHC-P 1:50 - 1:200 WB 1:500 - 1:2000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control SH-SY5Y Calculated Mw 38 kDa Properties Form Liquid Purification Affinity purification with immunogen. Buffer PBS (pH 7.3), 0.02% Sodium azide and 50% Glycerol. Preservative 0.02% sodium azide Stabilizer 50% Glycerol Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. Note For laboratory research only, not for drug, diagnostic or other use. www.arigobio.com 1/2 Bioinformation Database links GeneID: 255022 Human Swiss-port # Q8IU99 Human Gene Symbol CALHM1 Gene Full Name calcium homeostasis modulator 1 Background This gene encodes a calcium channel that plays a role in processing of amyloid-beta precursor protein. A polymorphism at this locus has been reported to be associated with susceptibility to late-onset Alzheimer's disease in some populations, but the pathogenicity of this polymorphism is unclear.[provided by RefSeq, Mar 2010] Function Pore-forming subunit of a voltage-gated ion channel required for sensory perception of sweet, bitter and umami tastes.
    [Show full text]
  • Identification of Isobutyryl-Coa Dehydrogenase and Its Deficiency
    Molecular Genetics and Metabolism 77 (2002) 68–79 www.academicpress.com Identification of isobutyryl-CoA dehydrogenase and its deficiency in humans Tien V. Nguyen,a Brage S. Andresen,b,c Thomas J. Corydon,b Sandro Ghisla,d Nasser Abd-El Razik,d Al-Walid A. Mohsen,a Stephen D. Cederbaum,e Diane S. Roe,f Charles R. Roe,f Nicolas J. Lench,g and Jerry Vockleya,* a Department of Medical Genetics, Mayo Clinic, Rochester, MN 55905, USA b Institute for Human Genetics, Aarhus University, Aarhus, Denmark c Research Unit for Molecular Medicine, Skejby Sygehus and Aarhus University, Aarhus, Denmark d Faculty of Biology, University of Konstanz, Konstanz, Germany e Department of Pediatrics, UCLA Medical Center, Los Angeles, CA, USA f Institute of Metabolic Disease, Baylor University, Dallas, TX, USA g Molecular Medicine Unit, University of Leeds, St. JamesÕ University Hospital, Leeds, UK Received 19 July 2002; received in revised form 31 July 2002; accepted 1 August 2002 Abstract The acyl-CoA dehydrogenases (ACDs) are a family of related enzymes that catalyze the a,b-dehydrogenation of acyl-CoA esters. Two homologues active in branched chain amino acid metabolism have previously been identified. We have used expression in Escherichia coli to produce a previously uncharacterized ACD-like sequence (ACAD8) and define its substrate specificity. Purified À1 À1 recombinant enzyme had a kcat=Km of 0.8, 0.23, and 0.04 (lM s ) with isobutyryl-CoA, (S) 2-methylbutyryl-CoA, and n-propionyl- CoA, respectively, as substrates. Thus, this enzyme is an isobutyryl-CoA dehydrogenase. A single patient has previously been described whose fibroblasts exhibit a specific deficit in the oxidation of valine.
    [Show full text]