RESEARCH ARTICLE The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees Jian Huang1,2☯, Chunmei Zhang1,2☯, Xing Zhao3☯, Zhangjun Fei4☯, KangKang Wan3, Zhong Zhang1,2, Xiaoming Pang5, Xiao Yin1, Yang Bai4, Xiaoqing Sun3, Lizhi Gao6, Ruiqiang Li3, Jinbo Zhang3*, Xingang Li1,2* 1 College of Forestry, Northwest A&F University, Yangling, China, 2 Center for Jujube Engineering and Technology of State Forestry Administration, Northwest A&F University, Yangling, China, 3 Novogene a11111 Bioinformatics Institute, Beijing, China, 4 Boyce Thompson Institute, Cornell University, Ithaca, New York, United States of America, 5 College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China, 6 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China ☯ These authors contributed equally to this work. *
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[email protected] (JZ) OPEN ACCESS Citation: Huang J, Zhang C, Zhao X, Fei Z, Wan K, Abstract Zhang Z, et al. (2016) The Jujube Genome Jujube (Ziziphus jujuba Mill.) belongs to the Rhamnaceae family and is a popular fruit tree Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit species with immense economic and nutritional value. Here, we report a draft genome of the Trees. PLoS Genet 12(12): e1006433. doi:10.1371/ dry jujube cultivar `Junzao' and the genome resequencing of 31 geographically diverse journal.pgen.1006433 accessions of cultivated and wild jujubes (Ziziphus jujuba var. spinosa). Comparative analy- Editor: Gregory P. Copenhaver, The University of sis revealed that the genome of `Dongzao', a fresh jujube, was ~86.5 Mb larger than that of North Carolina at Chapel Hill, UNITED STATES the `Junzao', partially due to the recent insertions of transposable elements in the `Dongzao' Received: June 14, 2016 genome.