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The Taxonomicon Systema Naturae 2000

Classification of () down to

Compiled by Drs. S.J. Brands Universal Taxonomic Services

6 Nov 2017 Systema Naturae 2000 - Domain Bacteria - Domain Bacteria Woese et al. 1990 1 Genus †Eoleptonema Schopf 1983, 2 Genus †Primaevifilum Schopf 1983, incertae sedis 3 Genus †Archaeotrichion Schopf 1968, incertae sedis 4 Genus †Siphonophycus Schopf 1968, incertae sedis 5 Genus Bactoderma Tepper and Korshunova 1973 (Approved Lists 1980), incertae sedis 6 Genus Stibiobacter Lyalikova 1974 (Approved Lists 1980), incertae sedis 7.1.1.1.1.1 Superphylum "" Craig et al. 2010 1.1 Phylum "" 1.2.1 Phylum "Acidithiobacillia" 1.2.2.1 Phylum "" 1.2.2.2.1 Candidate phylum Muproteobacteria (RIF23) Anantharaman et al. 2016 1.2.2.2.2 Phylum "" 2 Phylum "" 7.1.1.1.1.2 Phylum "Deltaproteobacteria_1" 7.1.1.1.2.1.1.1 Phylum "" [polyphyletic] 7.1.1.1.2.1.1.2.1 Phylum "Deltaproteobacteria_2" 7.1.1.1.2.1.1.2.2 Phylum "Deltaproteobacteria_3" 7.1.1.1.2.1.2 Candidate phylum Dadabacteria (CSP1-2) Hug et al. 2015 7.1.1.1.2.2.1 Candidate phylum "MBNT15" 7.1.1.1.2.2.2 Candidate phylum "Uncultured Bacterial Phylum 10 (UBP10)" Parks et al. 2017 7.1.1.2.1 Phylum "Nitrospirae_1" 7.1.1.2.2 Phylum Chrysiogenetes Garrity and Holt 2001 7.1.2.1.1 Phylum "" Garrity and Holt 2001 [polyphyletic] 7.1.2.1.2.1.1 Candidate phylum Rokubacteria (CSP1-6) Hug et al. 2015 7.1.2.1.2.1.2 Candidate phylum "NC10" 7.1.2.1.2.2.1 Candidate phylum (KSB3) Sekiguchi et al. 2015 7.1.2.1.2.2.2 Candidate phylum Tectomicrobia Wilson et al. 2014 7.1.2.2.1 Candidate phylum Schekmanbacteria (RIF3) Anantharaman et al. 2016 7.1.2.2.2.1 Candidatus Entotheonella Schmidt et al. 2000 7.1.2.2.2.2 Phylum "" Lücker et al. 2013 7.2.1 Phylum Thrash and Coates 2012 7.2.2.1 Candidate phylum Aminicenantes (OP8) Rinke et al. 2013 7.2.2.2 Candidate phylum Fischerbacteria (RIF25) Anantharaman et al. 2016 8.1.1.1 Superphylum -Chlorobi- (FCB) Gupta 2004 1.1.1.1.1.1.1 Phylum Bacteroidetes Krieg et al. 2012 1.1.1.1.1.1.2 Phylum Chlorobi Iino et al. 2010 1.1.1.1.1.2 Phylum Ignavibacteriae Podosokorskaya et al. 2013 1.1.1.1.2.1 Phylum "Calditrichaeota" Kublanov et al. 2017 1.1.1.1.2.2 Candidate phylum "KSB1" 1.1.1.2.1 Candidate phylum (SAR406 / Marine Group A) Rinke et al. 2013 1.1.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 11 (UBP11)" Parks et al. 2017 1.1.2.1.1 Candidate phylum Edwardsbacteria (RIF29) Anantharaman et al. 2016 1.1.2.1.2.1 Candidate phylum Raymondbacteria (RIF7) Anantharaman et al. 2016 1.1.2.1.2.2 Phylum Fibrobacteres Garrity and Holt 2012 1.1.2.2.1.1 Phylum Zhang et al. 2003 1.1.2.2.1.2 Candidate phylum Glassbacteria (RIF5) Anantharaman et al. 2016 1.1.2.2.2 Candidate phylum Latescibacteria (WS3) Rinke et al. 2013 1.2.1.1 Candidate phylum (RBG-1) Castelle et al. 2013 1.2.1.2 Candidate phylum "Uncultured Bacterial Phylum 14 (UBP14)" Parks et al. 2017 1.2.1.3.1 Candidate phylum Handelsmanbacteria (RIF27) Anantharaman et al. 2016 1.2.1.3.2.1 Candidate phylum "TA06" 1.2.1.3.2.2 Candidate phylum Eisenbacteria (RIF28) Anantharaman et al. 2016 1.2.2.1 Candidate phylum "Uncultured Bacterial Phylum 1 (UBP1)" Parks et al. 2017 1.2.2.2 Candidate phylum "Uncultured Bacterial Phylum 2 (UBP2)" Parks et al. 2017 2.1.1 Candidate phylum Cloacimonetes (WWE1) Rinke et al. 2013 2.1.2 Candidate phylum Delongbacteria (RIF26) Anantharaman et al. 2016 2.2.1 Candidate phylum (Hyd24-12) Kirkegaard et al. 2016 2.2.2.1 Candidate phylum Hydrothermae (EM3) Jungbluth et al. 2017 2.2.2.2 Candidate phylum "WOR-3" 8.1.1.2.1 Superphylum -- (PVC) Wagner and Horn 2006 1.1.1.1 Phylum Verrucomicrobia Hedlund 2011 1.1.1.2 Phylum Lentisphaerae Cho et al. 2004 1.1.2 Phylum Chlamydiae Garrity and Holt 2012 1.2 Candidate phylum "Uncultured Bacterial Phylum 17 (UBP17)" Parks et al. 2017 2 Phylum "Planctomycetes" Garrity and Holt 2001 8.1.1.2.2 Candidate phylum Hydrogenedentes (NKB19) Rinke et al. 2013 8.1.2.1.1.1.1 Phylum Geissinger et al. 2010 8.1.2.1.1.1.2 Candidate phylum Firestonebacteria (RIF1) Anantharaman et al. 2016 8.1.2.1.1.1.3 Candidate phylum Desantisbacteria Probst et al. 2017 8.1.2.1.1.2.1 Candidate phylum Aerophobetes (CD12 / BHI80-139) Rinke et al. 2013 8.1.2.1.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 5 (UBP5)" Parks et al. 2017 - 1 -

© Universal Taxonomic Services, Zwaag, The Netherlands Systema Naturae 2000 - Domain Bacteria - 8.1.2.1.2.1.1 Candidate phylum Omnitrophica (OP3) Rinke et al. 2013 8.1.2.1.2.1.2 Candidate phylum "Uncultured Bacterial Phylum 3 (UBP3)" Parks et al. 2017 8.1.2.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 4 (UBP4)" Parks et al. 2017 8.1.2.2.1 Candidate phylum Fieseler et al. 2004 8.1.2.2.2 Candidate phylum "BRC1" 8.2.1.1.1 Superphylum Battistuzzi et al. 2004 1.1.1 Phylum corrig. Gibbons and Murray 1978 (Approved Lists 1980) 1.1.2.1 Phylum Tamaki et al. 2011 1.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 13 (UBP13)" Parks et al. 2017 1.2.1.1 Phylum "" Garrity and Holt 2001 1.2.1.2 Phylum "-" 1.2.2.1 Phylum Garrity and Holt 2001 1.2.2.2.1 Candidate phylum "Uncultured Bacterial Phylum 9 (UBP9/SHA-109)" Parks et al. 2017 1.2.2.2.2 Candidate phylum "Uncultured Bacterial Phylum 12 (UBP12)" Parks et al. 2017 2.1 Candidate phylum Coatesbacteria (RIF8) Anantharaman et al. 2016 2.2.1.1 Phylum (ex Stanier 1974) Cavalier-Smith 2002 - cyanobacteria 2.2.1.2 Candidate phylum (ACD20) Wrighton et al. 2014 2.2.2.1 Candidate phylum "RBX1" 2.2.2.2 Candidate phylum "WOR1" 2.2.2.3 Candidate phylum Margulisbacteria (RIF30) Anantharaman et al. 2016 8.2.1.1.2.1.1.1 Phylum Reysenbach 2001 8.2.1.1.2.1.1.2 Candidate phylum Acetothermia (OP1) Rinke et al. 2013 8.2.1.1.2.1.2.1 Candidate phylum Fervidibacteria (Oct-Spa1-106) Rinke et al. 2013 8.2.1.1.2.1.2.2.1.1 Phylum Caldiserica Mori et al. 2009 8.2.1.1.2.1.2.2.1.2 Phylum "Coprothermobacteraeota" Parks et al. 2017 8.2.1.1.2.1.2.2.2 Phylum Dictyoglomi Patel 2012 8.2.1.1.2.2.1 Phylum Jumas-Bilak et al. 2009 8.2.1.1.2.2.2 Candidate phylum (OP9) Rinke et al. 2013 8.2.1.2.1 Candidate phylum "Uncultured Bacterial Phylum 16 (UBP16)" Parks et al. 2017 8.2.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 15 (UBP15)" Parks et al. 2017 8.2.2.1.1.1.1 Candidate phylum Lambdaproteobacteria (RIF24) Anantharaman et al. 2016 8.2.2.1.1.1.2 Phylum "" 8.2.2.1.1.2 Phylum Deferribacteres Garrity and Holt 2001 8.2.2.1.2.1.1.1.1 Phylum Reysenbach 2001 8.2.2.1.2.1.1.1.2 Candidate phylum Calescamantes (EM19) Rinke et al. 2013 8.2.2.1.2.1.1.2 Candidate phylum Fraserbacteria (RIF31) Anantharaman et al. 2016 8.2.2.1.2.1.2.1 Phylum Garrity and Holt 2012 8.2.2.1.2.1.2.2 Candidate phylum "Uncultured Bacterial Phylum 6 (UBP6)" Parks et al. 2017 8.2.2.1.2.2.1 Candidate phylum Riflebacteria (RIF32) Anantharaman et al. 2016 8.2.2.1.2.2.2 Candidate phylum Wallbacteria (RIF33) Anantharaman et al. 2016 8.2.2.2.1 Phylum "" Garrity and Holt 2001 8.2.2.2.2.1.1 Candidate phylum Lindowbacteria (RIF2) Anantharaman et al. 2016 8.2.2.2.2.1.2 Phylum "Dependentiae (TM6)" Yeoh et al. 2016 8.2.2.2.2.1.3 Candidate phylum "Uncultured Bacterial Phylum 8 (UBP8)" Parks et al. 2017 8.2.2.2.2.2.1 Candidate phylum "Uncultured Bacterial Phylum 7 (UBP7)" Parks et al. 2017 8.2.2.2.2.2.2.1 "Candidate Phyla Radiation (CPR)" Brown et al. 2015 1.1 Candidate phylum Dojkabacteria (WS6) Wrighton et al. 2016 1.2.1.1.1 Candidate phylum "CPR3" Brown et al. 2015 1.2.1.1.2 Candidate phylum Woykebacteria (RIF34) Anantharaman et al. 2016 1.2.1.2.1 Candidate phylum "CPR1" Brown et al. 2015 1.2.1.2.2 Candidate superphylum Microgenomates (OP11) Brown et al. 2015 1.1 Candidate phylum Daviesbacteria Brown et al. 2015 1.2 Candidate phylum Curtissbacteria Brown et al. 2015 2.1.1.1 Candidate phylum Shapirobacteria Brown et al. 2015 2.1.1.2.1 Candidate phylum Amesbacteria Brown et al. 2015 2.1.1.2.2.1 Candidate phylum Blackburnbacteria (RIF35) Anantharaman et al. 2016 2.1.1.2.2.2 Candidate phylum Woesebacteria Brown et al. 2015 2.1.2.1 Candidate phylum Beckwithbacteria Brown et al. 2015 2.1.2.2.1 Candidate phylum Chisholmbacteria (RIF36) Anantharaman et al. 2016 2.1.2.2.2.1 Candidate phylum Pacebacteria Brown et al. 2015 2.1.2.2.2.2 Candidate phylum Collierbacteria Brown et al. 2015 2.2.1 Candidate phylum Roizmanbacteria Brown et al. 2015 2.2.2.1 Candidate phylum Gottesmanbacteria Brown et al. 2015 2.2.2.2 Candidate phylum Levybacteria Brown et al. 2015 1.2.2 Candidate phylum (WWE3) Hug et al. 2016 2.1.1.1.1 Candidate phylum Abawacabacteria (RIF46) Anantharaman et al. 2016 2.1.1.1.2.1.1 Candidate phylum Absconditabacteria (SR1) Hug et al. 2016 2.1.1.1.2.1.2 Candidate phylum (GN02 / BD1-5) Rinke et al. 2013 2.1.1.1.2.2 Candidate phylum Peregrinibacteria (PER) Brown et al. 2015 2.1.1.2 Candidate superphylum Parcubacteria (OD1) Brown et al. 2015 1.1 Candidate phylum Doudnabacteria (SM2F11) Anantharaman et al. 2016 1.2.1 Candidate phylum Kerfeldbacteria (RIF4) Anantharaman et al. 2016 - 2 -

© Universal Taxonomic Services, Zwaag, The Netherlands Systema Naturae 2000 - Domain Bacteria - 1.2.2.1.1 Candidate phylum Komeilibacteria (RIF6) Anantharaman et al. 2016 1.2.2.1.2.1 Candidate phylum Jacksonbacteria (RIF38) Anantharaman et al. 2016 1.2.2.1.2.2 Candidate phylum Veblenbacteria (RIF39) Anantharaman et al. 2016 1.2.2.2.1 Candidate phylum Kuenenbacteria Brown et al. 2015 1.2.2.2.2.1.1 Candidate phylum Buchananbacteria (RIF37) Anantharaman et al. 2016 1.2.2.2.2.1.2 Candidate phylum Falkowbacteria Brown et al. 2015 1.2.2.2.2.2.1 Candidate phylum Magasanikbacteria Brown et al. 2015 1.2.2.2.2.2.2 Candidate phylum Uhrbacteria Brown et al. 2015 2.1 Candidate phylum Andersenbacteria (RIF9) Anantharaman et al. 2016 2.2.1.1 Candidate phylum Yanofskybacteria Brown et al. 2015 2.2.1.2.1.1 Candidate phylum Azambacteria-i Brown et al. 2015 2.2.1.2.1.2.1.1 Candidate phylum "Azambacteria-ii" 2.2.1.2.1.2.1.2.1.1.1 Candidate phylum Ryanbacteria (RIF10) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.1 Candidate phylum Giovannonibacteria Brown et al. 2015 2.2.1.2.1.2.1.2.1.1.2.2.1 Candidate phylum Niyogibacteria (RIF11) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.1 Candidate phylum Tagabacteria (RIF12) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.2.1 Candidate phylum Vogelbacteria (RIF14) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.1.1 Candidate phylum Adlerbacteria Brown et al. 2015 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.1.2.1 Candidatus Sonnebornia yantaiensis Gong et al. 2014 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.1.2.2 Candidate phylum Kaiserbacteria Brown et al. 2015 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.2.1 Candidate phylum Campbellbacteria Brown et al. 2015 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.2.2.1 Candidate phylum Zambryskibacteria (RIF15) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.1.2.2.2 Candidate phylum Taylorbacteria (RIF16) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.2.1 Candidate phylum Nomurabacteria Brown et al. 2015 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.2.2.1 Candidate phylum Yonathbacteria (RIF44) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.1.2.2.2.2.2.2.2.2 Candidate phylum Lloydbacteria (RIF45) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.1.2 Candidate phylum Sungbacteria (RIF17) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.2.1 Candidate phylum Brennerbacteria (RIF18) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.2.2.1 Candidate phylum Jorgensenbacteria Brown et al. 2015 2.2.1.2.1.2.1.2.2.2.2.1 Candidate phylum Wolfebacteria Brown et al. 2015 2.2.1.2.1.2.1.2.2.2.2.2.1 Candidate phylum Colwellbacteria (RIF41) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.2.2.2.2.2.1 Candidate phylum Liptonbacteria (RIF42) Anantharaman et al. 2016 2.2.1.2.1.2.1.2.2.2.2.2.2.2 Candidate phylum Harrisonbacteria (RIF43) Anantharaman et al. 2016 2.2.1.2.1.2.2 Candidate phylum Terrybacteria (RIF13) Anantharaman et al. 2016 2.2.1.2.2.1.1 Candidate phylum Spechtbacteria (RIF19) Anantharaman et al. 2016 2.2.1.2.2.1.2.1 Candidate phylum Staskawiczbacteria (RIF20) Anantharaman et al. 2016 2.2.1.2.2.1.2.2.1 Candidate phylum Wildermuthbacteria (RIF21) Anantharaman et al. 2016 2.2.1.2.2.1.2.2.2 Candidate phylum Nealsonbacteria (RIF40) Anantharaman et al. 2016 2.2.1.2.2.2 Candidate phylum Portnoybacteria (RIF22) Anantharaman et al. 2016 2.2.2 Candidate phylum Moranbacteria (OD1-i) Brown et al. 2015 2.1.2.1 Candidate phylum "KAZAN" 2.1.2.2 Candidate phylum (ACD58) Wrighton et al. 2014 2.2.1 Candidate phylum "CPR2" Brown et al. 2015 2.2.2 Candidate phylum (TM7) Albertsen et al. 2013 8.2.2.2.2.2.2.2 Candidate phylum Probst et al. 2017

Citation: Brands, S.J. (ed.), 2017. Classification of Domain Bacteria (prokaryotes) down to Phylum. In Systema Naturae 2000. The Taxonomicon. Universal Taxonomic Services, Zwaag, The Netherlands, 6 Nov 2017.

Sources

Anantharaman, K., Brown, C.T., Hug, L.A., Sharon, I., Castelle, C.J., Probst, A.J., Thomas, B.C., Singh, A., Wilkins, M.J., Karaoz, U., Brodie, E.L., Williams, K.H., Hubbard, S.S. & Banfield, J.F. 2016. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat. Commun. 7 (13219), 24 Oct 2016: 1-11. Brown, C.T., Hug, L.A., Thomas, B.C., Sharon, I., Castelle, C.J., Singh, A., Wilkins, M.J., Wrighton, K.C., Williams, K.H. & Banfield, J.F. 2015. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature 523, 9 Jul 2015: 208-211, Suppl. Info.. Euzéby, J.P. 2016. Classification of domains and phyla - Hierarchical classification of prokaryotes (bacteria). Version 2.0, 2 Oct 2016. Hug, L.A., Baker, B.J., Anantharaman, K., Brown, C.T., Probst, A.J., Castelle, C.J., Butterfield, C.N., Hernsdorf, A.W., Amano, Y., Ise, K., Suzuki, Y., Dudek, N., Relman, D.A., Finstad, K.M., Amundson, R., Thomas, B.C. & Banfield, J.F. 2016. A new view of the tree of . Nat. Microbiol. 16048, 11 Apr 2016: 1-6. Parks, D.H., Rinke, C., Chuvochina, M., Chaumeil, P.-A., Woodcroft, B.J., Evans, P.N., Hugenholtz, P. & Tyson, G.W. 2017. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the . Nat. Microbiol. 2, 11 Sep 2017: 1533-1542. Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.-F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A., Dodsworth, J.A., Hedlund, B.P., Tsiamis, G., Sievert, S.M., Liu, W.-T., Eisen, J.A., Hallam, S.J., Kyrpides, N.C., Stepanauskas, R., Rubin, E.M., Hugenholtz, P. & Woyke, T. 2013. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 25 Jul 2013: 431-437. Schopf, J.W. 1992. Paleobiology of the Archean. In J.W. Schopf et al., Geology and Paleobiology of the Archean Earth. In J.W. Schopf & C. Klein (eds.), The Proterozoic Biosphere: a multidisciplinary study. Cambridge University Press, New York, NY: 25-39.

DISCLAIMER: This document is not published for nomenclatural purposes within the meaning of the International Code of Nomenclature of Bacteria (ICNB).

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© Universal Taxonomic Services, Zwaag, The Netherlands