414-2013: Stealing the Admin's Thunder: SAS® Macros to Interact with the UNIX OS from Within SAS® Enterprise Guide®
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UNIX Cheat Sheet – Sarah Medland Help on Any Unix Command List a Directory Change to Directory Make a New Directory Remove A
THE 2013 INTERNATIONAL WORKSHOP ON STATISTICAL METHODOLOGY FOR HUMAN GENOMIC STUDIES UNIX cheat sheet – Sarah Medland Help on any Unix command man {command} Type man ls to read the manual for the ls command. which {command} Find out where a program is installed whatis {command} Give short description of command. List a directory ls {path} ls -l {path} Long listing, with date, size and permisions. ls -R {path} Recursive listing, with all subdirs. Change to directory cd {dirname} There must be a space between. cd ~ Go back to home directory, useful if you're lost. cd .. Go back one directory. Make a new directory mkdir {dirname} Remove a directory/file rmdir {dirname} Only works if {dirname} is empty. rm {filespec} ? and * wildcards work like DOS should. "?" is any character; "*" is any string of characters. Print working directory pwd Show where you are as full path. Copy a file or directory cp {file1} {file2} cp -r {dir1} {dir2} Recursive, copy directory and all subdirs. cat {newfile} >> {oldfile} Append newfile to end of oldfile. Move (or rename) a file mv {oldfile} {newfile} Moving a file and renaming it are the same thing. View a text file more {filename} View file one screen at a time. less {filename} Like more , with extra features. cat {filename} View file, but it scrolls. page {filename} Very handy with ncftp . nano {filename} Use text editor. head {filename} show first 10 lines tail {filename} show last 10 lines Compare two files diff {file1} {file2} Show the differences. sdiff {file1} {file2} Show files side by side. Other text commands grep '{pattern}' {file} Find regular expression in file. -
Introduction to Linux – Part 1
Introduction to Linux – Part 1 Brett Milash and Wim Cardoen Center for High Performance Computing May 22, 2018 ssh Login or Interactive Node kingspeak.chpc.utah.edu Batch queue system … kp001 kp002 …. kpxxx FastX ● https://www.chpc.utah.edu/documentation/software/fastx2.php ● Remote graphical sessions in much more efficient and effective way than simple X forwarding ● Persistence - can be disconnected from without closing the session, allowing users to resume their sessions from other devices. ● Licensed by CHPC ● Desktop clients exist for windows, mac, and linux ● Web based client option ● Server installed on all CHPC interactive nodes and the frisco nodes. Windows – alternatives to FastX ● Need ssh client - PuTTY ● http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html - XShell ● http://www.netsarang.com/download/down_xsh.html ● For X applications also need X-forwarding tool - Xming (use Mesa version as needed for some apps) ● http://www.straightrunning.com/XmingNotes/ - Make sure X forwarding enabled in your ssh client Linux or Mac Desktop ● Just need to open up a terminal or console ● When running applications with graphical interfaces, use ssh –Y or ssh –X Getting Started - Login ● Download and install FastX if you like (required on windows unless you already have PuTTY or Xshell installed) ● If you have a CHPC account: - ssh [email protected] ● If not get a username and password: - ssh [email protected] Shell Basics q A Shell is a program that is the interface between you and the operating system -
A Brief Introduction to Unix-2019-AMS
Brief Intro to Linux/Unix Brief Intro to Unix (contd) A Brief Introduction to o Brief History of Unix o Compilers, Email, Text processing o Basics of a Unix session o Image Processing Linux/Unix – AMS 2019 o The Unix File System Pete Pokrandt o Working with Files and Directories o The vi editor UW-Madison AOS Systems Administrator o Your Environment [email protected] o Common Commands Twitter @PTH1 History of Unix History of Unix History of Unix o Created in 1969 by Kenneth Thompson and Dennis o Today – two main variants, but blended o It’s been around for a long time Ritchie at AT&T o Revised in-house until first public release 1977 o System V (Sun Solaris, SGI, Dec OSF1, AIX, o It was written by computer programmers for o 1977 – UC-Berkeley – Berkeley Software Distribution (BSD) linux) computer programmers o 1983 – Sun Workstations produced a Unix Workstation o BSD (Old SunOS, linux, Mac OSX/MacOS) o Case sensitive, mostly lowercase o AT&T unix -> System V abbreviations 1 Basics of a Unix Login Session Basics of a Unix Login Session Basics of a Unix Login Session o The Shell – the command line interface, o Features provided by the shell o Logging in to a unix session where you enter commands, etc n Create an environment that meets your needs n login: username n Some common shells n Write shell scripts (batch files) n password: tImpAw$ n Define command aliases (this Is my password At work $) Bourne Shell (sh) OR n Manipulate command history IHateHaving2changeMypasswordevery3weeks!!! C Shell (csh) n Automatically complete the command -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
The Linux Command Line
The Linux Command Line Fifth Internet Edition William Shotts A LinuxCommand.org Book Copyright ©2008-2019, William E. Shotts, Jr. This work is licensed under the Creative Commons Attribution-Noncommercial-No De- rivative Works 3.0 United States License. To view a copy of this license, visit the link above or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042. A version of this book is also available in printed form, published by No Starch Press. Copies may be purchased wherever fine books are sold. No Starch Press also offers elec- tronic formats for popular e-readers. They can be reached at: https://www.nostarch.com. Linux® is the registered trademark of Linus Torvalds. All other trademarks belong to their respective owners. This book is part of the LinuxCommand.org project, a site for Linux education and advo- cacy devoted to helping users of legacy operating systems migrate into the future. You may contact the LinuxCommand.org project at http://linuxcommand.org. Release History Version Date Description 19.01A January 28, 2019 Fifth Internet Edition (Corrected TOC) 19.01 January 17, 2019 Fifth Internet Edition. 17.10 October 19, 2017 Fourth Internet Edition. 16.07 July 28, 2016 Third Internet Edition. 13.07 July 6, 2013 Second Internet Edition. 09.12 December 14, 2009 First Internet Edition. Table of Contents Introduction....................................................................................................xvi Why Use the Command Line?......................................................................................xvi -
Student Number: Surname: Given Name
Computer Science 2211a Midterm Examination Sample Solutions 9 November 20XX 1 hour 40 minutes Student Number: Surname: Given name: Instructions/Notes: The examination has 35 questions on 9 pages, and a total of 110 marks. Put all answers on the question paper. This is a closed book exam. NO ELECTRONIC DEVICES OF ANY KIND ARE ALLOWED. 1. [4 marks] Which of the following Unix commands/utilities are filters? Correct answers are in blue. mkdir cd nl passwd grep cat chmod scriptfix mv 2. [1 mark] The Unix command echo HOME will print the contents of the environment variable whose name is HOME. True False 3. [1 mark] In C, the null character is another name for the null pointer. True False 4. [3 marks] The protection code for the file abc.dat is currently –rwxr--r-- . The command chmod a=x abc.dat is equivalent to the command: a. chmod 755 abc.dat b. chmod 711 abc.dat c. chmod 155 abc.dat d. chmod 111 abc.dat e. none of the above 5. [3 marks] The protection code for the file abc.dat is currently –rwxr--r-- . The command chmod ug+w abc.dat is equivalent to the command: a. chmod 766 abc.dat b. chmod 764 abc.dat c. chmod 754 abc.dat d. chmod 222 abc.dat e. none of the above 2 6. [3 marks] The protection code for def.dat is currently dr-xr--r-- , and the protection code for def.dat/ghi.dat is currently -r-xr--r-- . Give one or more chmod commands that will set the protections properly so that the owner of the two files will be able to delete ghi.dat using the command rm def.dat/ghi.dat chmod u+w def.dat or chmod –r u+w def.dat 7. -
Unix Security Overview: 1
CIS/CSE 643: Computer Security (Syracuse University) Unix Security Overview: 1 Unix Security Overview 1 User and Group • Users – root: super user (uid = 0) – daemon: handle networks. – nobody: owns no files, used as a default user for unprivileged operations. ∗ Web browser can run with this mode. – User needs to log in with a password. The encrypted password is stored in /etc/shadow. – User information is stored in /etc/passwd, the place that was used to store passwords (not anymore). The following is an example of an entry in this file. john:x:30000:40000:John Doe:/home/john:/usr/local/bin/tcsh • Groups – Sometimes, it is more convenient if we can assign permissions to a group of users, i.e. we would like to assign permission based on groups. – A user has a primary group (listed in /etc/passwd), and this is the one associated to the files the user created. – Any user can be a member of multiple groups. – Group member information is stored in /etc/group % groups uid (display the groups that uid belongs to) – For systems that use NIS (Network Information Service), originally called Yellow Page (YP), we can get the group information using the command ypcat. % ypcat group (can display all the groups and their members) 2 File Permissions • File Permissions – The meaning of the permission bits in Unix. ∗ Owner (u), Group (g), and Others (o). ∗ Readable (r), Writable (w), and Executable (x). ∗ Example: -rwxrwxrwx (777) • Permissions on Directories: – r: the directory can be listed. – w: can create/delete a file or a directory within the directory. -
File Security Lock Down Your Data
File Security Lock Down Your Data Brian Reames January 22, 2012 Table of Contents 1.0 Basic Linux Permissions...............................................................................................................4 1.1 Determining Permissions……………………………………………………………………..................... 5 1.2 File Permissions vs. Directory Permissions………………………………………………….............. 6 1.3 Changing Permissions………………………………………………………………………….................... 7 1.3.1 Symbolic Method…………………………………………………………………….................... 8 1.3.2 Octal Method………………………………………………………………………..................... 10 1.3.3 Changing Permissions Graphically……………………………………………….............. 12 1.4 Examples of Unintentional Access…………………………………………………………................. 13 2.0 Setting Default Permissions………………………………………………………………………...................... 15 2.1 Common umask Settings……………………………………………………………………....................17 3.0 Advanced Linux Permissions……………………………………………………………………….................... 18 3.1 Special Permission: setuid………………………………………………………………….....................19 3.1.1 Setting the setuid Permission……………………………………………………................ 20 3.1.2 Caution Regarding setuid………………………………………………………….................22 3.2 Special Permission setgid……………………………………………………………………................... 23 3.2.1 setgid on a File……………………………………………………………………...................... 24 3.2.2 setgid on a Directory……………………………………………………………….................. 25 3.2.3 Caution Regarding setgid…………………………………………………………................. 28 3.3 Special Permission: sticky bit……………………………………………………………….................. -
APPENDIX a Aegis and Unix Commands
APPENDIX A Aegis and Unix Commands FUNCTION AEGIS BSD4.2 SYSS ACCESS CONTROL AND SECURITY change file protection modes edacl chmod chmod change group edacl chgrp chgrp change owner edacl chown chown change password chpass passwd passwd print user + group ids pst, lusr groups id +names set file-creation mode mask edacl, umask umask umask show current permissions acl -all Is -I Is -I DIRECTORY CONTROL create a directory crd mkdir mkdir compare two directories cmt diff dircmp delete a directory (empty) dlt rmdir rmdir delete a directory (not empty) dlt rm -r rm -r list contents of a directory ld Is -I Is -I move up one directory wd \ cd .. cd .. or wd .. move up two directories wd \\ cd . ./ .. cd . ./ .. print working directory wd pwd pwd set to network root wd II cd II cd II set working directory wd cd cd set working directory home wd- cd cd show naming directory nd printenv echo $HOME $HOME FILE CONTROL change format of text file chpat newform compare two files emf cmp cmp concatenate a file catf cat cat copy a file cpf cp cp Using and Administering an Apollo Network 265 copy std input to std output tee tee tee + files create a (symbolic) link crl In -s In -s delete a file dlf rm rm maintain an archive a ref ar ar move a file mvf mv mv dump a file dmpf od od print checksum and block- salvol -a sum sum -count of file rename a file chn mv mv search a file for a pattern fpat grep grep search or reject lines cmsrf comm comm common to 2 sorted files translate characters tic tr tr SHELL SCRIPT TOOLS condition evaluation tools existf test test -
Linux Networking Cookbook.Pdf
Linux Networking Cookbook ™ Carla Schroder Beijing • Cambridge • Farnham • Köln • Paris • Sebastopol • Taipei • Tokyo Linux Networking Cookbook™ by Carla Schroder Copyright © 2008 O’Reilly Media, Inc. All rights reserved. Printed in the United States of America. Published by O’Reilly Media, Inc., 1005 Gravenstein Highway North, Sebastopol, CA 95472. O’Reilly books may be purchased for educational, business, or sales promotional use. Online editions are also available for most titles (safari.oreilly.com). For more information, contact our corporate/institutional sales department: (800) 998-9938 or [email protected]. Editor: Mike Loukides Indexer: John Bickelhaupt Production Editor: Sumita Mukherji Cover Designer: Karen Montgomery Copyeditor: Derek Di Matteo Interior Designer: David Futato Proofreader: Sumita Mukherji Illustrator: Jessamyn Read Printing History: November 2007: First Edition. Nutshell Handbook, the Nutshell Handbook logo, and the O’Reilly logo are registered trademarks of O’Reilly Media, Inc. The Cookbook series designations, Linux Networking Cookbook, the image of a female blacksmith, and related trade dress are trademarks of O’Reilly Media, Inc. Java™ is a trademark of Sun Microsystems, Inc. .NET is a registered trademark of Microsoft Corporation. Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and O’Reilly Media, Inc. was aware of a trademark claim, the designations have been printed in caps or initial caps. While every precaution has been taken in the preparation of this book, the publisher and author assume no responsibility for errors or omissions, or for damages resulting from the use of the information contained herein. -
Configuring Your Login Session
SSCC Pub.# 7-9 Last revised: 5/18/99 Configuring Your Login Session When you log into UNIX, you are running a program called a shell. The shell is the program that provides you with the prompt and that submits to the computer commands that you type on the command line. This shell is highly configurable. It has already been partially configured for you, but it is possible to change the way that the shell runs. Many shells run under UNIX. The shell that SSCC users use by default is called the tcsh, pronounced "Tee-Cee-shell", or more simply, the C shell. The C shell can be configured using three files called .login, .cshrc, and .logout, which reside in your home directory. Also, many other programs can be configured using the C shell's configuration files. Below are sample configuration files for the C shell and explanations of the commands contained within these files. As you find commands that you would like to include in your configuration files, use an editor (such as EMACS or nuTPU) to add the lines to your own configuration files. Since the first character of configuration files is a dot ("."), the files are called "dot files". They are also called "hidden files" because you cannot see them when you type the ls command. They can only be listed when using the -a option with the ls command. Other commands may have their own setup files. These files almost always begin with a dot and often end with the letters "rc", which stands for "run commands". -
Command $Line; Done
http://xkcd.com/208/ >0 TGCAGGTATATCTATTAGCAGGTTTAATTTTGCCTGCACTTGGTTGGGTACATTATTTTAAGTGTATTTGACAAG >1 TGCAGGTTGTTGTTACTCAGGTCCAGTTCTCTGAGACTGGAGGACTGGGAGCTGAGAACTGAGGACAGAGCTTCA >2 TGCAGGGCCGGTCCAAGGCTGCATGAGGCCTGGGGCAGAATCTGACCTAGGGGCCCCTCTTGCTGCTAAAACCAT >3 TGCAGGATCTGCTGCACCATTAACCAGACAGAAATGGCAGTTTTATACAAGTTATTATTCTAATTCAATAGCTGA >4 TGCAGGGGTCAAATACAGCTGTCAAAGCCAGACTTTGAGCACTGCTAGCTGGCTGCAACACCTGCACTTAACCTC cat seqs.fa PIPE grep ACGT TGCAGGTATATCTATTAGCAGGTTTAATTTTGCCTGCACTTGGTTGGGTACATTATTTTAAGTGTATTTGACAAG >1 TGCAGGTTGTTGTTACTCAGGTCCAGTTCTCTGAGACTGGAGGACTGGGAGCTGAGAACTGAGGACAGAGCTTCA >2 TGCAGGGCCGGTCCAAGGCTGCATGAGGCCTGGGGCAGAATCTGACCTAGGGGCCCCTCTTGCTGCTAAAACCAT >3 TGCAGGATCTGCTGCACCATTAACCAGACAGAAATGGCAGTTTTATACAAGTTATTATTCTAATTCAATAGCTGA >4 TGCAGGGGTCAAATACAGCTGTCAAAGCCAGACTTTGAGCACTGCTAGCTGGCTGCAACACCTGCACTTAACCTC cat seqs.fa Does PIPE “>0” grep ACGT contain “ACGT”? Yes? No? Output NULL >1 TGCAGGTTGTTGTTACTCAGGTCCAGTTCTCTGAGACTGGAGGACTGGGAGCTGAGAACTGAGGACAGAGCTTCA >2 TGCAGGGCCGGTCCAAGGCTGCATGAGGCCTGGGGCAGAATCTGACCTAGGGGCCCCTCTTGCTGCTAAAACCAT >3 TGCAGGATCTGCTGCACCATTAACCAGACAGAAATGGCAGTTTTATACAAGTTATTATTCTAATTCAATAGCTGA >4 TGCAGGGGTCAAATACAGCTGTCAAAGCCAGACTTTGAGCACTGCTAGCTGGCTGCAACACCTGCACTTAACCTC cat seqs.fa Does PIPE “TGCAGGTATATCTATTAGCAGGTTTAATTTTGCCTGCACTTG...G” grep ACGT contain “ACGT”? Yes? No? Output NULL TGCAGGTTGTTGTTACTCAGGTCCAGTTCTCTGAGACTGGAGGACTGGGAGCTGAGAACTGAGGACAGAGCTTCA >2 TGCAGGGCCGGTCCAAGGCTGCATGAGGCCTGGGGCAGAATCTGACCTAGGGGCCCCTCTTGCTGCTAAAACCAT >3 TGCAGGATCTGCTGCACCATTAACCAGACAGAAATGGCAGTTTTATACAAGTTATTATTCTAATTCAATAGCTGA