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New Methods for the Synthesis of Nitrogen Containing, Biologically Relevant Small Molecules
New Methods for the Synthesis of Nitrogen Containing, Biologically Relevant Small Molecules James K. Howard BSc (Hons) A thesis submitted in fulfilment of the requirements for the degree Doctor of Philosophy School of Physical Sciences (Chemistry) University of Tasmania 2015 Table of Contents DECLARATION III! STATEMENT OF AUTHORITY III! STATEMENT ON PUBLISHED CHAPTERS IV! ACKNOWLEDGEMENTS V! ABSTRACT VI! ABBREVIATION LIST VII! PUBLICATIONS X! PART 1: THE OXIDATIVE DEAROMATISATION OF PYRROLE I! CHAPTER 1 – INTRODUCTION 1! 1.1 PYRROLIDINE NATURAL PRODUCTS AND SYNTHETIC STRATEGIES 1! 1.2 METHODS FOR THE DEAROMATISATION OF PYRROLE 11! 1.3 THE GENERAL STRATEGY FOR THE THESIS 22! CHAPTER 2 – INVESTIGATIONS TOWARDS CONTROLLED OXIDATION 24! 2.1 PARTIAL REDUCTION OF PYRROLE TOWARDS PREUSSIN 24! 2.2 THE HYPERVALENT IODINE OXIDATION OF ELECTRON-RICH PYRROLES 26! 2.3 THE IBX CONTROLLED OXIDATION OF N-METHYLPYRROLE 41! 2.4 IODONIUMPYRROLIC SPECIES 46! 2.5 MECHANISTIC CONSIDERATIONS FOR THE CONTROLLED OXIDATION OF PYRROLE 50! CHAPTER 3 – CONTROLLED PHOTO-OXIDATION OF PYRROLE 55! 3.1 BACKGROUND 55! 3.2 PHOTO-OXIDATION OF PYRROLIC SPECIES WITH LED PHOTO-REACTOR 61! 3.3 OTHER OXIDATIONS TO DEMONSTRATE GENERAL BATCH CAPABILITY. 74! CHAPTER 4 – APPLYING THE OXIDATION OF PYRROLE TO TOTAL SYNTHESIS 78! 4.1 TARGETING PREUSSIN VIA THE OXIDATION OF PYRROLE 78! 4.2 OXIDATION AT THE C3 AND C4 POSITION 83! 4.3 N-ACYLIMINIUM ION METHODOLOGY 87! I 4.4 REDUCTION OF 5-SUBSITUTED 2-PYRROLINONES 97! 4.5 CONCLUSIONS AND CONSIDERATIONS FOR THE FUTURE 102! CHAPTER 5 – EXPERIMENTAL 103! 5.0 GENERAL EXPERIMENTAL 103! 5.1 MISCELLANEOUS PYRROLE SYNTHESIS 106! 5.2 CHAPTER 2 EXPERIMENTAL 109! 5.3 EXPERIMENTAL FOR CHAPTER 3 124! 5.4 EXPERIMENTAL FOR CHAPTER 4 138! 5.5 REFERENCE LIST 144! PART 2: THE STRAIN DRIVEN REARRANGEMENT OF CYCLOPROPENYL TRICHLOROACETIMIDATES. -
Design of Sensors for Highly Phosphorylated Natural Compounds
Design of sensors for highly phosphorylated natural compounds Dissertation Submitted for the Degree Doctor rerum naturalium (Doctor rer. nat.) at the Faculty of Chemistry and Pharmacy University of Freiburg by Rahel Hinkelmann Rheinfelden (Baden) 2020 Vorsitzender des Promotionsausschusses: Prof. Dr. Stefan Weber Dekan: Prof. Dr. O. Einsle Referent/in: Prof. Dr. H. J. Jessen Korreferent/in: Prof. Dr. M. Müller Datum der mündlichen Prüfung: 30.10.2020 Abstract Highly phosphorylated metabolites, e.g. inositol polyphosphates (InsPs), diphospho- inositol phosphates (PP-InsPs), inorganic polyphosphate (polyP) and Magic spot nu- cleotides (MSN) regulate various biological processes. Their distinctive role in biology remain still elusive particularly concerning their dynamic turnover. The investigation of their contributions in metabolic processes asks for the development of, in vivo and in vitro, real time analytical detection. In this work the design, synthesis and evaluation of a set of new fluorescent chemosen- sors is presented, since inositol polyphosphates and polyP are lacking an intrinsic chro- mophore. The synthesized chemosensors can be divided into the following three cate- gories - Pyrene-excimer based, disassembly approach and DAPI derivatives. A 4’,6-diamidin-2-phenylindol (DAPI) synthesis was developed in this work. The photo- physical properties of the respective set of synthesized chemosensors in combination with the above mentioned phosphorylated metabolites was evaluated. Fe3+-Salen and PyDPA was successfully used as a polyacrylamide gel electrophoresis (PAGE) stain and the latter dye was applied as a post-column staining reagent for Ins(1,2,3,4,5,6)-hexakisphosphate (InsP6) on an ion chromatography system. In addition, the investigation and appli- cation of a new 31P-NMR based method using a chiral solvating agent revealed the stereoselectivity of the first described naturally occurring 1-phytase. -
SYNTHESIS, STRUCTURAL and BIOLOGICAL STUDIES of POTENTIAL 5-HT3 RECEPTOR ANTAGONISTS. BRENDAN A. WHELAN Ph.D. 1994
SYNTHESIS, STRUCTURAL AND BIOLOGICAL STUDIES OF POTENTIAL 5-HT3 RECEPTOR ANTAGONISTS. BRENDAN A. WHELAN Ph.D. 1994 SYNTHESIS, STRUCTURAL AND BIOLOGICAL STUDIES OF POTENTIAL 5-HT3 RECEPTOR ANTAGONISTS. bv* Brendan /I.lA/h&Un, A Thesis presented to Dublin City University for the degree of Doctor of Philosophy. This work was carried out under the supervision of Dr. Paraic James at Dublin City University, Dublin and Dr. Enrique Galvez at Universidad de Alcala de Henares, Madrid. December 1994 mt? anc^ mtf/ parents (linttoy and /Cathie&n. I hereby certify that this material, which I now submit for assessment on the programme of study leading to the award of PhD is entirely my own work and has not been taken from the work of others save and to the extent that such work has been cited and acknowledged within the text of my own work Candidate Date: I ' tf></- Adnou/iedgements / wouid fiile to begin bp expressing my* pr-a.titu.dle, to mp superu-isor Or, Paraic (James a t Dublin City* {/(nio-ersitp and to Or.Fnritjue (jdbez and Dr. /satfriepa a t th e iyfniu-ersitp ofr Ahatfa de- nenareSj Madrid, To (lose, Sanz-Aporicio and /sabetf Fonseca / woutfd tfi£e to g/Ve mp than is faor collaborating with the X~rap studies and to Antonio Orga^es ofi F.A .F .S, ltd . faor the phar-mac oiogiG a / studies. liietoise, to Dr.tfracia (yfceda and Or, Antonio (jar cl a faor the, biochemical assays. Sincere thanis to affl mp department coffleagues and stafafa mem hers at A^caia. -
Development of Fluorescent Ligands for A1 Adenosine Receptor And
Development of fluorescent ligands for A1 adenosine receptor and cannabinoid receptors A dissertation submitted for the degree of Doctor of Philosophy at the University of Otago, Dunedin, New Zealand Sameek Singh July 2018 Abstract Adenosine A1 receptor (A1AR), cannabinoid type 1 receptor (CB1R) and cannabinoid type 2 receptor (CB2R) are class A G protein-coupled receptors (GPCRs) and play important roles in human pathophysiological conditions such as cardiovascular, neurological, metabolic and immunological disorders. Fluorescent ligands are powerful tools to investigate processes such as receptor expression, localisation, trafficking and receptor-protein interactions in the native cell environment. Fluorescent ligands can also be used as tracers in pharmacological assays, instead of the commonly used radioligands that carry inherent safety risks. The development of fluorescent ligands with high affinity, selectivity and suitable imaging properties for A1AR, CB1R and CB2R would greatly contribute to an increased understanding of receptor biology and thus facilitate the drug development process. Development of fluorescent ligands with sufficient polarity for cannabinoid receptors (CBRs), which have lipid-based endogenous ligands, is an especially challenging task. This thesis describes the development of small molecule- based fluorescent ligands for A1AR, CB1R and CB2R, via attachment of a linker and fluorophore to a ligand. (Benzimidazolyl)isoquinolinols, analogues of previously reported high affinity A1AR (benzimidazolyl)isoquinolines, were explored in chapter 2 for the development of A1AR fluorescent ligands. A procedure for 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) mediated aromatisation of tetrahydroisoquinolines and multistep synthesis for the preparation of (benzimidazolyl)isoquinolinols was developed. Based on the previously reported structure–activity relationship (SAR), linkers (and linker plus fluorophore conjugates) were introduced in the C-6 or C-7 position of (benzimidazolyl)isoquinolinols. -
A Comprehensive Review of the Covalent Immobilization of Biomolecules Onto Electrospun Nanofibers
nanomaterials Review A Comprehensive Review of the Covalent Immobilization of Biomolecules onto Electrospun Nanofibers Soshana Smith 1,* , Katarina Goodge 1 , Michael Delaney 2, Ariel Struzyk 2, Nicole Tansey 1 and Margaret Frey 1 1 Department of Fiber Science and Apparel Design, Cornell University, Ithaca, NY 14853, USA; [email protected] (K.G.); [email protected] (N.T.); [email protected] (M.F.) 2 Robert Frederick Smith School of Chemical & Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA; [email protected] (M.D.); [email protected] (A.S.) * Correspondence: [email protected] Received: 7 October 2020; Accepted: 21 October 2020; Published: 27 October 2020 Abstract: Biomolecule immobilization has attracted the attention of various fields such as fine chemistry and biomedicine for their use in several applications such as wastewater, immunosensors, biofuels, et cetera. The performance of immobilized biomolecules depends on the substrate and the immobilization method utilized. Electrospun nanofibers act as an excellent substrate for immobilization due to their large surface area to volume ratio and interconnectivity. While biomolecules can be immobilized using adsorption and encapsulation, covalent immobilization offers a way to permanently fix the material to the fiber surface resulting in high efficiency, good specificity, and excellent stability. This review aims to highlight the various covalent immobilization techniques being utilized and their benefits and drawbacks. These methods typically fall into two categories: (1) direct immobilization and (2) use of crosslinkers. Direct immobilization techniques are usually simple and utilize the strong electrophilic functional groups on the nanofiber. While crosslinkers are used as an intermediary between the nanofiber substrate and the biomolecule, with some crosslinkers being present in the final product and others simply facilitating the reactions.