Vitamin Synthesis in Plants: Tocopherols and Carotenoids

Total Page:16

File Type:pdf, Size:1020Kb

Vitamin Synthesis in Plants: Tocopherols and Carotenoids ANRV274-PP57-27 ARI 29 March 2006 12:21 Vitamin Synthesis in Plants: Tocopherols and Carotenoids Dean DellaPenna1 and Barry J. Pogson2 1Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824; email: [email protected] 2ARC Center of Excellence in Plant Energy Biology, School of Biochemistry and Molecular Biology, Australian National University, Canberra ACT 0200, Australia; email: [email protected] Annu. Rev. Plant Biol. Key Words 2006. 57:711–38 metabolic engineering, vitamin E, provitamin A, Arabidopsis, The Annual Review of Plant Biology is online at chloroplast, photosynthesis plant.annualreviews.org Abstract by UNIVERSITAT BERN on 09/12/09. For personal use only. doi: 10.1146/ annurev.arplant.56.032604.144301 Carotenoids and tocopherols are the two most abundant groups of Copyright c 2006 by lipid-soluble antioxidants in chloroplasts. In addition to their many Annual Reviews. All rights functional roles in photosynthetic organisms, these compounds are Annu. Rev. Plant Biol. 2006.57:711-738. Downloaded from arjournals.annualreviews.org reserved also essential components of animal diets, including humans. During First published online as a the past decade, a near complete set of genes required for the synthe- Review in Advance on February 7, 2006 sis of both classes of compounds in photosynthetic tissues has been identified, primarily as a result of molecular genetic and biochemi- 1543-5008/06/0602- 0711$20.00 cal genomics-based approaches in the model organisms Arabidopsis thaliana and Synechocystis sp. PCC6803. Mutant analysis and trans- genic studies in these and other systems have provided important insight into the regulation, activities, integration, and evolution of individual enzymes and are already providing a knowledge base for breeding and transgenic approaches to modify the types and levels of these important compounds in agricultural crops. 711 ANRV274-PP57-27 ARI 29 March 2006 12:21 man nutrition. Plastidic isoprenoid synthe- Contents sis represents a major source of such com- pounds and includes the two major groups INTRODUCTION: PLASTIDIC of lipid-soluble antioxidants in photosynthetic ISOPRENOID SYNTHESIS . 712 tissues, the tocochromanols and carotenoids. CAROTENOID BIOSYNTHESIS The tocochromanols are a group of eight to- IN PLANTS..................... 714 copherols and tocotrienols that collectively General Considerations and Early constitute vitamin E, an essential nutrient in Steps in Biosynthesis .......... 714 the diet of all mammals. Carotenoids consti- Isomerizations During Carotenoid tute a much larger group of over 700 struc- Desaturation ................. 714 tures (17) that provide fruit and flowers with β-Carotene Derived Xanthophyll distinctive red, orange, and yellow coloring Biosynthesis .................. 717 and are the dietary source of pigmentation Lutein Biosynthesis............... 717 in the tissues of many fish, crustaceans, and Carotenoid Cleavage Products . 718 birds. In some cases specific carotenoids are Carotenoids in Nongreen Plastids . 719 essential components of mammalian diets as Engineering the Carotenoid precursors for vitamin A synthesis. Vitamin A Pathway to Benefit Human deficiency remains a significant global health Health and Agriculture . ..... 720 problem (121, 147a). TOCOCHROMANOL Both carotenoids and tocochromanols BIOSYNTHESIS IN are synthesized in whole or in part from CYANOBACTERIA AND the plastidic isoprenoid biosynthetic path- PLANTS ........................ 721 way. The biosynthesis of isoprenoid pre- General Considerations: cursors is covered in detail elsewhere (67). Structures, Chemistry, and Briefly, two distinct pathways exist for isope- Vitamin E Activities ........... 721 tenylpyrophosphate (IPP) production: the The Tocochromanol Pathway cytosolic mevalonic acid pathway and the plas- Succumbs to Biochemical tidic mevalonate-independent, methylery- Genomics ..................... 722 thritol 4-phosphate (MEP) pathway. The Tocochromanol Aromatic methylerythritol 4-phosphate pathway com- Headgroup Synthesis .......... 723 bines glyceraldehyde-3-phosphate and pyru- Prenylation of Homogentisic Acid. 725 vate to form deoxy-d-xylulose 5-phosphate, An Alternate Route for Phytyl-Tail by UNIVERSITAT BERN on 09/12/09. For personal use only. and a number of steps are then required Synthesis...................... 726 to form IPP and dimethylallylpyrophosphate The Methyltransferases of (DMAPP) (67). IPP is subject to a sequen- Tocochromanol Synthesis ...... 726 tial series of condensation reactions to form Annu. Rev. Plant Biol. 2006.57:711-738. Downloaded from arjournals.annualreviews.org TheTocopherolCyclaseEnzyme . 727 geranylgeranyl diphosphate (GGDP), a key Tocopherol Functions ............ 728 intermediate in the synthesis of carotenoids, tocochromanols, and many other plastidic iso- prenoids (Figure 1). The tocochromanol and carotenoid INTRODUCTION: PLASTIDIC biosynthetic pathways are typical of many ISOPRENOID SYNTHESIS plant compounds in that the enzymes from Plastids contain sophisticated biochemical plant sources have historically proven ex- machinery producing an enormous array of tremely difficult to purify and analyze. This compounds that perform vital plastidic and is a result of a combination of properties, cellular functions. Many of these compounds including membrane association, low specific are also important for agriculture and hu- activity and poor stability of the enzymes 712 DellaPenna · Pogson ANRV274-PP57-27 ARI 29 March 2006 12:21 Figure 1 Overview of carotenoid and tocopherol biosynthesis in plants. The 2-C-methyl-d-erythritol- 4-phosphate (MEP) pathway provides isopetenylpyrophosphate (IPP) for synthesis of the central intermediate geranylgeranyl diphosphate (GGDP). GGDP can be used for synthesis of phytoene, chlorophylls, and tocotrienols or reduced to phytyl-diphosphate (PDP) used for phylloquinone, chlorophyll, and tocopherol synthesis. Phytol released from chlorophyll degradation is also used for tocopherol synthesis (not shown, see text). The pathway shown by orange arrows provides the by UNIVERSITAT BERN on 09/12/09. For personal use only. carotenoids found in leaves of most species. Other carotenoids and carotenoid cleavage/modification products are produced in certain species and/or particular tissues, and when known, the primary substrate for cleavage is given in parentheses. The pathway shown by green arrows is the synthesis of tocopherols from homogentisate, a product of the shikimate pathway. For clarity, only tocopherols are Annu. Rev. Plant Biol. 2006.57:711-738. Downloaded from arjournals.annualreviews.org shown, but when GGDP is condensed with homogentisate, the corresponding tocotrienols are produced by the same pathway. ABA, abscisic acid; MPBQ, methyl-6-phytyl-1,4-benzoquinone. during isolation as well as limitations in syn- approaches. This review focuses on progress thesizing or obtaining commercially available since the last reviews on these subjects in substrates for assays. Thus, much of our this series (30, 45). However, several recent understanding of the genes and enzymes of reviews on aspects of the biosynthesis, func- tocochromanol and carotenoid biosynthesis tion, and catabolism of these compounds are has resulted from the increasing ease of available, and readers are directed to these integrating complementary comparative ge- sources for additional information (29, 33, nomics, biochemical genetics, and molecular 38, 49, 74, 82–84, 104, 140, 144). www.annualreviews.org • Vite and Vita Synthesis in Plants 713 ANRV274-PP57-27 ARI 29 March 2006 12:21 CAROTENOID BIOSYNTHESIS form lycopene. Desaturation requires a plastid IN PLANTS terminal oxidase and plastoquinone in pho- tosynthetic tissues (8, 21, 85). Bacterial de- General Considerations and Early saturation differs from plants in that a single Steps in Biosynthesis enzyme, crtI (phytoene desaturase), intro- Carotenoids comprise a large isoprenoid fam- duces four double bonds into phytoene to ily and most are C40 tetraterpenoids de- yield all-trans-lycopene (28). rived from phytoene. The carotenoid back- bone is either linear or contains one or more cyclic β-ionone or ε-ionone rings or, less fre- Isomerizations During Carotenoid quently, the unusual cyclopentane ring of cap- Desaturation santhin and capsorubin that imparts the dis- Until recently, the higher plant desaturases tinct red color to peppers. Nonoxygenated were assumed sufficient for the production carotenoids are referred to as carotenes, of all-trans-lycopene. This conclusion was whereas their oxygenated derivatives are des- reached despite the accumulation of tetra- ignated as xanthophylls. The most com- cis-lycopene in tangerine tomato and algal monly occurring carotenes are β-carotene in mutants (27, 135) and biochemical evidence chloroplasts and lycopene in chromoplasts to the contrary from daffodil (9). Recently, of some flowers and fruits, e.g., tomatoes. the carotenoid isomerase gene, CRTISO, was The most abundant xanthophylls in photo- identified in Arabidopsis and tomato (55, synthetic plant tissues (lutein, violaxanthin, 89). Intriguingly, the protein shows 20%– and neoxanthin) are key components of the 30% identity to the bacterial carotenoid light-harvesting complexes. Carotenoids are desaturases; however it has no desaturase ac- involved in photosystem assembly, light har- tivity (89). Rather, the pathway to all-trans- vesting and photoprotection, photomorpho- lycopene proceeds via cis intermediates (16, genesis, nonphotochemical quenching,
Recommended publications
  • Effect of Phenol on Β-Carotene Content in Total Carotenoids Production in Cultivation of Rhodotorula Glutinis
    Korean J. Chem. Eng., 21(3), 689-692 (2004) Effect of Phenol on β-Carotene Content in Total Carotenoids Production in Cultivation of Rhodotorula glutinis Bong Kyun Kim*, Pyoung Kyu Park, Hee Jeong Chae** and Eui Yong Kim† Department of Chemical Engineering, University of Seoul, Seoul 130-743, Korea *R&D Center, SEMO Co. Ltd., Incheon 558-10, Korea **Department of Food and Biotechnology, and Department of Innovative Industrial Technology, Graduate School of Venture, Hoseo University, Asan 336-795, Korea (Received 28 November 2003 • accepted 18 December 2003) Abstract−The composition of carotenoids produced by R. glutinis was observed to be dependent upon the addition of phenol into medium. A stimulatory effect of phenol on β-carotene of Rhodotorula glutins K-501 grown on glucose was investigated. Carotenoids produced by Rhodotorula glutinis K-501 were identified to torularhodin, torulene and β-carotene, whose composition was 79.5%, 6.4% and 14.1%, respectively. The β-carotene content increased up to 35% when phenol was added to culture media at 500 ppm. The ratio of torularhodin decreased with increasing phenol con- centration, while torulene content was almost constant. Key words: Phenol, β-Carotene, Carotenogenic Ratio, Rhodotorula glutinis INTRODUCTION Sporobolomyces, produce a variety of carotenoids that have a broad region of light absorption of 450-550 nm so that the culture broth Carotenoids are liposoluble tetraterpenes, usually red or yellow, has a colored appearance [Girad et al., 1994; Walker et al., 1973]. and are one of the most important families of natural pigments. These The fermentation conditions, such as cultivation temperature [Nelis pigments have several conjugated double bonds that act as chro- and Deleenheer, 1991], lightening [Meyer et al., 1994], induced sub- mophores and thus absorb light in the visible region, which gives stances [Schroeder et al., 1993, 1995], and inhibitors [Girad et al., them their strong coloration properties.
    [Show full text]
  • Multiplicity of Carotene Patterns Derives from Competition Between
    www.nature.com/scientificreports OPEN Multiplicity of carotene patterns derives from competition between phytoene desaturase diversifcation and biological environments Mathieu Fournié1,2,3 & Gilles Truan1* Phytoene desaturases catalyse from two to six desaturation reactions on phytoene, generating a large diversity of molecules that can then be cyclised and produce, depending on the organism, many diferent carotenoids. We constructed a phylogenetic tree of a subset of phytoene desaturases from the CrtI family for which functional data was available. We expressed in a bacterial system eight codon optimized CrtI enzymes from diferent clades. Analysis of the phytoene desaturation reactions on crude extracts showed that three CrtI enzymes can catalyse up to six desaturations, forming tetradehydrolycopene. Kinetic data generated using a subset of fve purifed enzymes demonstrate the existence of characteristic patterns of desaturated molecules associated with various CrtI clades. The kinetic data was also analysed using a classical Michaelis–Menten kinetic model, showing that variations in the reaction rates and binding constants could explain the various carotene patterns observed. Competition between lycopene cyclase and the phytoene desaturases modifed the distribution between carotene intermediates when expressed in yeast in the context of the full β-carotene production pathway. Our results demonstrate that the desaturation patterns of carotene molecules in various biological environments cannot be fully inferred from phytoene desaturases classifcation but is governed both by evolutionary-linked variations in the desaturation rates and competition between desaturation and cyclisation steps. Carotenoids are organic pigments produced by plants, algae, fungi, and bacteria and can be subdivided into two families of molecules, carotenes and their oxidised counterparts, xanthophylls 1.
    [Show full text]
  • Β-Carotene-Rich Carotenoid-Protein Preparation and Exopolysaccharide Production by Rhodotorula Rubra GED8 Grown with a Yogurt S
    -Carotene-Rich Carotenoid-Protein Preparation and Exopolysaccharide Production by Rhodotorula rubra GED8 Grown with a Yogurt Starter Culture Ginka I. Frengova*, Emilina D. Simova, and Dora M. Beshkova Laboratory of Applied Microbiology, Institute of Microbiology, Bulgarian Academy of Sciences, 4002 Plovdiv, 26 Maritza Blvd., Bulgaria. E-mail: [email protected] * Author for correspondence and reprint requests Z. Naturforsch. 61c, 571Ð577 (2006); received December 29, 2005/February 6, 2006 The underlying method for obtaining a -carotene-rich carotenoid-protein preparation and exopolysaccharides is the associated cultivation of the carotenoid-synthesizing lactose-nega- tive yeast strain Rhodotorula rubra GED8 with the yogurt starter culture (Lactobacillus bulgaricus 2-11 + Streptococcus thermophilus 15HA) in whey ultrafiltrate (45 g lactose/l) with a maximum carotenoid yield of 13.37 mg/l culture fluid on the 4.5th day. The chemical composition of the carotenoid-protein preparation has been identified. The respective caro- tenoid and protein content is 497.4 μg/g dry cells and 50.3% per dry weight, respectively. An important characteristic of the carotenoid composition is the high percentage (51.1%) of - carotene (a carotenoid pigment with the highest provitamin A activity) as compared to 12.9% and 33.7%, respectively, for the other two individual pigments Ð torulene and torularhodin. Exopolysaccharides (12.8 g/l) synthesized by the yeast and lactic acid cultures, identified as acid biopolymers containing 7.2% glucuronic acid, were isolated in the cell-free supernatant. Mannose, produced exclusively by the yeast, predominated in the neutral carbohydrate bio- polymer component (76%). The mixed cultivation of R. rubra GED8 with the yogurt starter (L.
    [Show full text]
  • Directed Evolution of Biosynthetic Pathways to Carotenoids With
    1 CHAPTER 1 Diversifying Carotenoid Biosynthetic Pathways in the Laboratory Material from this chapter appears in Diversifying Carotenoid Biosynthetic Pathways by Directed Evolution, Daisuke Umeno‡, Alexander V. Tobias‡, and Frances H. Arnold, Microbiology and Molecular Biology Reviews, 69(1): 51-78 (2005) and is reprinted with permission from the American Society for Microbiology. ‡ Co-first authors 2 SUMMARY Microorganisms and plants synthesize a diverse array of natural products, many of which have proven indispensable to human health and well-being. Although many thousands of these have been characterized, the space of possible natural products—those that could be made biosynthetically—remains largely unexplored. For decades, this space has largely been the domain of chemists, who have synthesized scores of natural product analogs and have found many with improved or novel functions. New natural products have also been made in recombinant organisms via engineered biosynthetic pathways. Recently, methods inspired by natural evolution have begun to be applied to the search for new natural products. These methods force pathways to evolve in convenient laboratory organisms, where the products of new pathways can be identified and characterized in high- throughput screening programs. Carotenoid biosynthetic pathways have served as a convenient experimental system with which to demonstrate these ideas. Researchers have mixed, matched, and mutated carotenoid biosynthetic enzymes and screened libraries of these “evolved” pathways for the emergence of new carotenoid products. This has led to dozens of new pathway products not previously known to be made by the assembled enzymes. These new products include whole families of carotenoids built from backbones not found in nature.
    [Show full text]
  • The Role of Carotenoids and Their Derivatives in Mediating Interactions Between Insects and Their Environment
    Arthropod-Plant Interactions (2013) 7:1–20 DOI 10.1007/s11829-012-9239-7 REVIEW ARTICLE The role of carotenoids and their derivatives in mediating interactions between insects and their environment Jeremy J. Heath • Don F. Cipollini • John O. Stireman III Received: 16 March 2012 / Accepted: 28 November 2012 / Published online: 28 December 2012 Ó Springer Science+Business Media Dordrecht 2012 Abstract Carotenoids are long conjugated isoprenoid environment depends on them (Britton 1995a). Carotenoids molecules derived mainly from plants and microbial organ- are one of the most ubiquitous groups of organic molecules isms. They are highly diverse, with over 700 identified known, but how they function in modulating insect–envi- structures, and are widespread in nature. In addition to their ronment interactions is only beginning to be understood. In fundamental roles as light-harvesting molecules in photo- general, they are long conjugated chains of carbon with synthesis, carotenoids serve a variety of functions including rings on either end, which may contain oxygenated func- visual and colouring pigments, antioxidants and hormone tional groups. Carotenoids are essential in photosynthesis to precursors. Although the functions of carotenoids are rela- harvest light energy and protect chlorophyll in times of tively well studied in plants and vertebrates, studies are excess light energy by quenching reactive oxygen species severely lacking in insect systems. There is a particular dearth that are produced during photosynthesis and plant stress. In of knowledge on how carotenoids move among trophic levels, animals, their bright yellow to red colour is employed as influence insect multitrophic interactions and affect evolu- mating signals and aposematic colouration.
    [Show full text]
  • View and Research Objectives
    University of Alberta Carotenoid diversity in novel Hymenobacter strains isolated from Victoria Upper Glacier, Antarctica, and implications for the evolution of microbial carotenoid biosynthesis by Jonathan Lee Klassen A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Microbiology and Cell Biotechnology Department of Biological Sciences ©Jonathan Lee Klassen Fall 2009 Edmonton, Alberta Permission is hereby granted to the University of Alberta Libraries to reproduce single copies of this thesis and to lend or sell such copies for private, scholarly or scientific research purposes only. Where the thesis is converted to, or otherwise made available in digital form, the University of Alberta will advise potential users of the thesis of these terms. The author reserves all other publication and other rights in association with the copyright in the thesis and, except as herein before provided, neither the thesis nor any substantial portion thereof may be printed or otherwise reproduced in any material form whatsoever without the author's prior written permission. Examining Committee Dr. Julia Foght, Department of Biological Science Dr. Phillip Fedorak, Department of Biological Sciences Dr. Brenda Leskiw, Department of Biological Sciences Dr. David Bressler, Department of Agriculture, Food and Nutritional Science Dr. Jeffrey Lawrence, Department of Biological Sciences, University of Pittsburgh Abstract Many diverse microbes have been detected in or isolated from glaciers, including novel taxa exhibiting previously unrecognized physiological properties with significant biotechnological potential. Of 29 unique phylotypes isolated from Victoria Upper Glacier, Antarctica (VUG), 12 were related to the poorly studied bacterial genus Hymenobacter including several only distantly related to previously described taxa.
    [Show full text]
  • 3. Food Chemistry & Biotechnology 3.1. Lectures
    Chem. Listy, 102, s265–s1311 (2008) Food Chemistry & Biotechnology 3. FOOD CHEMISTRY been femented for 10 days at 10 °c under semiaerobic condi- & BIOTECHNOLOGY tions or 4–6 weeks at 10 °c under anaerobic conditions. Second cultivation medium: the sterile vinea drinks were inoculated by studied yeast strains and cultuivated at 3.1. Lectures 20 °c for 10 days under semiaerobic conditions. the samples were than sensorially evaluated by a group L01 NONSACCHAROMYCES YEAST IN GRAPE of degustators. the same samples were than analysed by gas MUST – ADVANTAGE OR SPOILAGE? chromatography for the aroma compounds production. each sample was analysed on the Gc MS (Shimadzu QP 2010) JAROSLAVA Kaňuchová PátKováa, EMÍLIA equipment and also on the Gc FiD equipment (Gc 8000 ce Breierováb and INGRID vajcziKová instruments). aInstitute for viticulture and enology of SARC two methods of sample preparation were done: Matuškova 25, 831 01 Bratislava, Slovak republic, the samples (20 ml) were extracted by ether (2 ml), and bInstitute of ChemistrySAS, Dúbravská cesta 9, 845 38 Brati- centrifuged prior to analysis. the etheric extract was used for slava, Slovak republic, analysis (liquid – liquid extraction). this method was used [email protected] for higher alcohols (propanol, isoamylacohol, ethyl ester and higher alcoholos esters) determination Introduction the samples were extracted by tenaq (solid phase mic- the fresh grape must consists of spontaneous microf- roextraction) and than 10 min sampling according to6. this lora formed from 90 to 99 % by yeasts. the most important method was used for monoterpenic compounds determina- genus is without doubt Saccharomyces cerevisiae which is tion.the same column and the same conditions were used by responsible for successive fermentation and good wine qua- both analysis: column: DB WaX 30 m, 0.25 × 0.25, tempe- lity.
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 7,252,985 B2 Cheng Et Al
    US007252985B2 (12) United States Patent (10) Patent No.: US 7,252,985 B2 Cheng et al. (45) Date of Patent: Aug. 7, 2007 (54) CAROTENOID KETOLASES Echinenone in the Cyanobacterium Synechocystis sp. PCC 6803*, J. Biol. Chem., vol. 272(15):9728-9733, 1997. (75) Inventors: Qiong Cheng, Wilmington, DE (US); Norihiko Misawa et al., Metabolic engineering for the production of Luan Tao, Claymont, DE (US); Henry carotenoids in non-carotenogenic bacteria and yeasts, J. of Biotech., Yao, Boothwyn, PA (US) vol. 59:169-181, 1998. National Center for Biotechnology Information General Identifier (73) Assignee: E. I. du Pont de Nemours and No. 5912291, Accession No. Y 15112, Sep. 15, 1999, M. Harker et Company, Wilmington, DE (US) al., Carotenoid biosynthesis genes in the bacterium Paracoccus narcusii MH1. National Center for Biotechnology Information General Identifier (*) Notice: Subject to any disclaimer, the term of this No. 2654317. Accession No. X86782, Sep. 9, 2004, M. Harker et patent is extended or adjusted under 35 al., Biosynthesis of ketocarotenoids in transgenic cyanobacteria U.S.C. 154(b) by 326 days. expressing the algal gene for beta-C-4-oxygenase, crtO. National Center for Biotechnology Information General Identifier (21) Appl. No.: 11/015,433 No. 903298, Accession No. D58422, N. Misawa et al., Canthaxanthin biosynthesis by the conversion of methylene to keto (22) Filed: Dec. 17, 2004 groups in a hydrocarbon beta-carotene by a single gene Biochem. Biophys. Res. Commun. 209(3), 867-876 (1995). (65) Prior Publication Data National Center for Biotechnology Information General Identifier No. 61629280, Accession No. D58420, N. Misawa et al., US 2005/0227311 A1 Oct.
    [Show full text]
  • Carotenoids Database: Structures, Chemical Fingerprints and Distribution Among Organisms Junko Yabuzaki*
    Database, 2017, 1–11 doi: 10.1093/database/bax004 Original article Original article Carotenoids Database: structures, chemical fingerprints and distribution among organisms Junko Yabuzaki* Center for Information Biology, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan *Corresponding author: Tel: þ81 774 23 2680; Fax: þ81 774 23 2680; Email: [email protected][AQ] Present address: Junko Yabuzaki, 1 34-9, Takekura, Mishima, Shizuoka 411-0807, Japan. Citation details: Yabuzaki,J. Carotenoids Database: structures, chemical fingerprints and distribution among organisms (2017) Vol. 2017: article ID bax004; doi:10.1093/database/bax004 Received 13 April 2016; Revised 14 January 2017; Accepted 16 January 2017 Abstract To promote understanding of how organisms are related via carotenoids, either evolu- tionarily or symbiotically, or in food chains through natural histories, we built the Carotenoids Database. This provides chemical information on 1117 natural carotenoids with 683 source organisms. For extracting organisms closely related through the biosyn- thesis of carotenoids, we offer a new similarity search system ‘Search similar caroten- oids’ using our original chemical fingerprint ‘Carotenoid DB Chemical Fingerprints’. These Carotenoid DB Chemical Fingerprints describe the chemical substructure and the modification details based upon International Union of Pure and Applied Chemistry (IUPAC) semi-systematic names of the carotenoids. The fingerprints also allow (i) easier prediction of six biological functions of carotenoids: provitamin A, membrane stabilizers, odorous substances, allelochemicals, antiproliferative activity and reverse MDR activity against cancer cells, (ii) easier classification of carotenoid structures, (iii) partial and exact structure searching and (iv) easier extraction of structural isomers and stereoisomers. We believe this to be the first attempt to establish fingerprints using the IUPAC semi- systematic names.
    [Show full text]
  • Carotenoids of Hemipteran Insects, from the Perspective of Chemo
    Biochemical Systematics and Ecology 95 (2021) 104241 Contents lists available at ScienceDirect Biochemical Systematics and Ecology journal homepage: www.elsevier.com/locate/biochemsyseco Carotenoids of hemipteran insects, from the perspective of ☆ chemo-systematic and chemical ecological studies Takashi Maoka a,*, Naoki Kawase b, Mantaro Hironaka c, Ritsuo Nishida d a Research Institute for Production Development 15 Shimogamo-morimoto-cho, Sakyo-ku, Kyoto, 606-0805, Japan b Minakuchi Kodomonomori Nature Museum 10 Kita-naiki, Minakuchi-cho, Koka, 528-0051, Japan c Ishikawa Prefecture University, Bioresources and Environmental Sciences 305, Suematsu, Nonoichi-1, 921-8836, Japan d Kyoto University Yoshida-Honmachi, Sakyo-ku, Kyoto, 606-8501, Japan ARTICLE INFO ABSTRACT Keywords: Carotenoids of 47 species of insects belonging to Hemiptera, including 16 species of Sternorrhyncha (aphids and Carotenoid a whitefly), 11 species of Auchenorrhyncha (planthoppers, leafhoppers, and cicadas), and 20 species of Heter­ Hemiptera optera (stink bugs, assassin bugs, water striders, water scorpions, water bugs, and backswimmers), were Food chain investigated from the viewpoints of chemo-systematic and chemical ecology. In aphids, carotenoids belonging to Chemo-systematics the torulene biosynthetic pathway such as β-zeacarotene, β,ψ-carotene, and torulene, and carotenoids with a Chemical ecology γ-end group such as β,γ-carotene and γ,γ-carotene were identified. Carotenoids belonging the torulene biosyn­ thetic pathway and with a γ-end group were also present in water striders. On the other hand, β-carotene, β-cryptoxanthin, and lutein, which originated from dietary plants, were present in both stink bugs and leaf­ hoppers. Assassin bugs also accumulated carotenoids from dietary insects. Trace amounts of carotenoids were detected in cicadas.
    [Show full text]
  • Structure Elucidation of the Novel Carotenoid
    www.nature.com/scientificreports OPEN Structure elucidation of the novel carotenoid gemmatoxanthin from the photosynthetic complex of Gemmatimonas phototrophica AP64 Nupur1, Marek Kuzma2, Jan Hájek1,3, Pavel Hrouzek1,3, Alastair T. Gardiner1, Martin Lukeš1, Martin Moos4, Petr Šimek4 & Michal Koblížek1* Gemmatimonas phototrophica AP64 is the frst phototrophic representative of the bacterial phylum Gemmatimonadetes. The cells contain photosynthetic complexes with bacteriochlorophyll a as the main light-harvesting pigment and an unknown carotenoid with a single broad absorption band at 490 nm in methanol. The carotenoid was extracted from isolated photosynthetic complexes, and purifed by liquid chromatography. A combination of nuclear magnetic resonance (1H NMR, COSY, 1H-13C HSQC, 1H-13C HMBC, J-resolved, and ROESY), high-resolution mass spectroscopy, Fourier- transformed infra-red, and Raman spectroscopy was used to determine its chemical structure. The novel linear carotenoid, that we have named gemmatoxanthin, contains 11 conjugated double bonds and is further substituted by methoxy, carboxyl and aldehyde groups. Its IUPAC-IUBMB semi- systematic name is 1′-Methoxy-19′-oxo-3′,4′-didehydro-7,8,1′,2′-tetrahydro- Ψ, Ψ carotene-16-oic acid. To our best knowledge, the presence of the carboxyl, methoxy and aldehyde groups on a linear C40 carotenoid backbone is reported here for the frst time. Photosynthesis is an ancient process that probably evolved more than 3 billion years ago 1. It is believed that the earliest phototrophic organisms were anoxygenic (not producing oxygen) species2, which throughout evolution diverged into a number of bacterial phyla. Te latest phylum from which anoxygenic phototrophic species have been isolated is Gemmatimonadetes. Te phylum Gemmatimonadetes was formally established in 2003, with Gemmatimonas (G.) aurantiaca as the type species.
    [Show full text]
  • Isolation of Carotenoid-Producing Yeasts from an Alpine Glacier Alberto Amaretti*A, Marta Simonea, Andrea Quartieria, Francesca Masinoa
    217 A publication of CHEMICAL ENGINEERING TRANSACTIONS The Italian Association VOL. 38, 2014 of Chemical Engineering www.aidic.it/cet Guest Editors: Enrico Bardone, Marco Bravi, Taj Keshavarz Copyright © 2014, AIDIC Servizi S.r.l., DOI: 10.3303/CET1438037 ISBN 978-88-95608-29-7; ISSN 2283-9216 Isolation of Carotenoid-producing Yeasts from an Alpine Glacier Alberto Amaretti*a, Marta Simonea, Andrea Quartieria, Francesca Masinoa, a a a Stefano Raimondi , Alan Leonardi , and Maddalena Rossi aDepartment of Life Sciences, University of Modena and Reggio Emilia, via Campi 183, 4100 Modena, MO, Italy [email protected] Cold-adapted yeasts are increasingly being isolated from glacial environments, including Arctic, Antarctic, and mountain glaciers. Psychrophilic yeast isolates mostly belong to Basidiomycota phylum, such as Cryptococcus, Mrakia, and Rhodotorula, and represent an understudied source of biodiversity for potential biotechnological applications. Since some basidiomycetous yeast genera (e.g. Rhodotorula, Phaffia, etc.) were demonstrated to produce commercially important carotenoids (e.g. β-carotene, torulene, torularhodin and astaxanthin), the present study aimed to obtain psychrophilic yeast isolates from the surface ice of an Italian glacier to identify new pigment-producers. 23 yeast isolates were obtained. Among them, three isolates giving pigmented colonies were subjected to ITS1/ITS2 sequencing and were attributed to the Basidiomycetous yeasts Dioszegia sp., Rhodotorula mucilaginosa, and Rhodotorula laryngis. The strains were cultured batch-wise in a carbon-rich medium at 15°C until the stationary phase was reached, then the pigments were extracted from freeze-dried biomass using a DMSO:acetone mixture. Visible absorption spectrum and HPLC-DAD analysis revealed the presence of carotenoid pigments.
    [Show full text]