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Genomic Approaches to Deconstruct Pluripotency
GG12CH08-Daley ARI 26 July 2011 14:10 Genomic Approaches to Deconstruct Pluripotency Yuin-Han Loh,1,2,∗ Lin Yang,1,2,∗ Jimmy Chen Yang,1,2,∗∗ Hu Li,3,4,∗∗ James J. Collins,3,4,5 and George Q. Daley1,2,5,6,7 1Stem Cell Transplantation Program, Division of Pediatric Hematology/Oncology, Children’s Hospital Boston; Dana-Farber Cancer Institute; and Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115; email: [email protected] 2Harvard Stem Cell Institute, Cambridge, Massachusetts 02115 3Department of Biomedical Engineering and Center for BioDynamics, Boston University, Boston, Massachusetts 02215 4Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02115 5Howard Hughes Medical Institute, Boston, Massachusetts 02115 6Division of Hematology, Brigham and Women’s Hospital, Boston, Massachusetts 02115 7Manton Center for Orphan Disease Research, Boston, Massachusetts 02115 Annu. Rev. Genomics Hum. Genet. 2011. Keywords 12:165–85 transcription regulation, epigenetics, histone modifications, DNA First published online as a Review in Advance on July 25, 2011 methylation, pluripotent stem cells The Annual Review of Genomics and Human Genetics Abstract is online at genom.annualreviews.org Embryonic stem cells (ESCs) first derived from the inner cell mass of by Boston University on 10/07/11. For personal use only. This article’s doi: 10.1146/annurev-genom-082410-101506 blastocyst-stage embryos have the unique capacity of indefinite self- renewal and potential to differentiate into all somatic cell types. Similar Copyright c 2011 by Annual Reviews. All rights reserved developmental potency can be achieved by reprogramming differen- tiated somatic cells into induced pluripotent stem cells (iPSCs). -
Analysis of the Gene Coding for Steroidogenic Factor 1 (SF1, NR5A1) in a Cohort of 50 Egyptian Patients with 46,XY Disorders of Sex Development
S Tantawy and others SF1 in Egyptians with 46,XY DSD 170:5 759–767 Clinical Study Analysis of the gene coding for steroidogenic factor 1 (SF1, NR5A1) in a cohort of 50 Egyptian patients with 46,XY disorders of sex development Sally Tantawy1,2, Inas Mazen2, Hala Soliman3, Ghada Anwar4, Abeer Atef4, Mona El-Gammal2, Ahmed El-Kotoury2, Mona Mekkawy5, Ahmad Torky2, Agnes Rudolf1, Pamela Schrumpf1, Annette Gru¨ ters1, Heiko Krude1, Marie-Charlotte Dumargne6, Rebekka Astudillo1, Anu Bashamboo6, Heike Biebermann1 and Birgit Ko¨ hler1 1Institute of Experimental Paediatric Endocrinology, University Children’s Hospital, Charite´ , Humboldt University, Correspondence Berlin, Germany, 2Department of Clinical Genetics and 3Department of Medical Molecular Genetics, Division of should be addressed Human Genetics and Genome Research, National Research Centre, Cairo, Egypt, 4Department of Paediatrics, to S Tantawy Cairo University, Cairo, Egypt, 5Department of Cytogenetics, Division of Human Genetics and Genome Research, Email National Research Centre, Cairo, Egypt and 6Human Developmental Genetics, Institut Pasteur, Paris, France [email protected] Abstract Objective: Steroidogenic factor 1 (SF1, NR5A1) is a key transcriptional regulator of genes involved in the hypothalamic– pituitary–gonadal axis. Recently, SF1 mutations were found to be a frequent cause of 46,XY disorders of sex development (DSD) in humans. We investigate the frequency of NR5A1 mutations in an Egyptian cohort of XY DSD. Design: Clinical assessment, endocrine evaluation and genetic analysis of 50 Egyptian XY DSD patients (without adrenal insufficiency) with a wide phenotypic spectrum. Methods: Molecular analysis of NR5A1 gene by direct sequencing followed by in vitro functional analysis of the European Journal of Endocrinology two novel missense mutations detected. -
The Impact of Skeletal Muscle Erα on Mitochondrial Function And
Copyedited by: oup MINI REVIEW The Impact of Skeletal Muscle ERα on Mitochondrial Function and Metabolic Health Downloaded from https://academic.oup.com/endo/article-abstract/161/2/bqz017/5735479 by University of Southern California user on 19 February 2020 Andrea L. Hevener1,2, Vicent Ribas1, Timothy M. Moore1, and Zhenqi Zhou1 1David Geffen School of Medicine, Department of Medicine, Division of Endocrinology, Diabetes, and Hypertension, University of California, Los Angeles, California 90095; and 2Iris Cantor-UCLA Women’s Health Research Center, University of California, Los Angeles, California 90095 ORCiD numbers: 0000-0003-1508-4377 (A. L. Hevener). The incidence of chronic disease is elevated in women after menopause. Increased expression of ESR1 (the gene that encodes the estrogen receptor alpha, ERα) in muscle is highly associated with metabolic health and insulin sensitivity. Moreover, reduced muscle expression levels of ESR1 are observed in women, men, and animals presenting clinical features of the metabolic syndrome (MetSyn). Considering that metabolic dysfunction elevates chronic disease risk, including type 2 diabetes, heart disease, and certain cancers, treatment strategies to combat metabolic dysfunction and associated pathologies are desperately needed. This review will provide published work supporting a critical and protective role for skeletal muscle ERα in the regulation of mitochondrial function, metabolic homeostasis, and insulin action. We will provide evidence that muscle-selective targeting of ERα may be effective for the preservation of mitochondrial and metabolic health. Collectively published findings support a compelling role for ERα in the control of muscle metabolism via its regulation of mitochondrial function and quality control. Studies identifying ERα-regulated pathways essential for disease prevention will lay the important foundation for the design of novel therapeutics to improve metabolic health of women while limiting secondary complications that have historically plagued traditional hormone replacement interventions. -
Sex Determination: a 'Window' of DAX1 Activity
Review TRENDS in Endocrinology and Metabolism Vol.15 No.3 April 2004 Sex determination: a ‘window’ of DAX1 activity Louisa M. Ludbrook and Vincent R. Harley Prince Henry’s Institute of Medical Research, PO Box 5152, Clayton, VIC 3168, Australia Traditionally, DAX1 was considered an ‘anti-testis’ gene that are probably important for male sex determination because DAX1 duplications in XY individuals cause have yet to be identified, because some 75% of sex reversal male-to-female sex reversal: dosage-sensitive sex rever- cases remain unexplained genetically [15]. Some progress sal (DSS). In DSS, two active DAX1 genes on one has been made in deciphering the roles and complex X chromosome can abrogate testis formation. By con- relationships of the known sex-determining genes during trast, mutations and deletions of DAX1 cause adrenal gonadogenesis. Here, we describe the emerging role of hypoplasia congenita (AHC). Although AHC patients DAX1 in male testis formation and discuss the possible develop testes, gonadal defects include disorganized molecular mechanisms through which DAX1 regulates testis cords and hypogonadotropic hypogonadism, this pathway. which is not completely restored with gonadotropin or androgen therapy. Recent evidence of XY sex reversal Expression of DAX1 in Dax1-deficient mice strongly supports a role for Dax1 DAX1 RNA expression is restricted to certain tissue types as a ‘pro-testis’ gene. Therefore, perhaps DAX1/Dax1 and is largely coexpressed with SF1, also crucial for both acts within a ‘window’ of activity, outside of which tes- adrenal and gonadal development [16–18]. Based on in tis formation does not occur. Here, we discuss the func- situ hybridization analyses, Sf1 and Dax1 are expressed in tion and possible mechanisms of DAX1 action in male both developing and adult adrenal, gonadal, hypothalamic gonadogenesis. -
Aromatase (Cyp19) Expression Is Up-Regulated by Targeted Disruption of Dax1
Aromatase (Cyp19) expression is up-regulated by targeted disruption of Dax1 Zhen J. Wang*, Baxter Jeffs*, Masafumi Ito*, John C. Achermann*, Richard N. Yu*, Dale B. Hales†, and J. Larry Jameson*‡ *Division of Endocrinology, Metabolism, and Molecular Medicine, Northwestern University Medical School, Chicago, IL 60611; and †University of Illinois, Chicago, IL 60612 Edited by Jean D. Wilson, University of Texas Southwestern Medical Center, Dallas, TX, and approved May 14, 2001 (received for review November 14, 2000) DAX-1 [dosage-sensitive sex reversal, adrenal hypoplasia con- nuclear receptors (6, 7). Consistent with this idea, DAX-1 genita (AHC) critical region on the X chromosome, gene 1] is an interacts directly with SF-1 and inhibits SF-1-mediated transac- orphan nuclear receptor that represses transcription by steroido- tivation (15, 16). genic factor-1 (SF-1), a factor that regulates expression of multiple Testicular Leydig cells express both Dax1 and Sf1 (7, 17) and steroidogenic enzymes and other genes involved in reproduction. constitute the major site of testosterone production in males Mutations in the human DAX1 gene (also known as AHC) cause the (17). Testosterone biosynthesis requires five steroidogenic pro- X-linked syndrome AHC, a disorder that is associated with hypogo- teins: steroidogenic acute regulatory protein (StAR), cholesterol nadotropic hypogonadism also. Characterization of Dax1-deficient side-chain cleavage enzyme (CYP11A), 3-hydroxysteroid de- male mice revealed primary testicular defects that included Leydig hydrogenase (3-HSD type II), 17␣-hydroxylase (CYP17), and cell hyperplasia (LCH) and progressive degeneration of the germi- 17-hydroxysteroid dehydrogenase (17-HSD type III). Testos- nal epithelium, leading to infertility. -
Molecular Basis Governing Primary Sex in Mammals
Jpn J Human Genet 41, 363-379, 1996 Review Article MOLECULAR BASIS GOVERNING PRIMARY SEX IN MAMMALS Kozo NAGAI Department of Biochemistry, Tokyo Medical College, 6-1-1 Shinjuku, Shinjuku-ku, Tokyo 160, Japan Summary The function of Sry for inducing a male gonad was iden- tified due to a development of a transgenic XX male mouse with testes by introducing a single gene into an embryo. The intronless Sry encodes a putative transcriptional protein harboring an HMG motif. The sequence similarity within the HMG motif has been highly conserved despite less conservation in other domains. Hence, the HMG motif must play a critical role in the transcriptional regulation, leading to the development of a male gonad. However, a non HMG box C terminal domain of Sry protein may also be indispensable for inducing normal testicular develop- ment. Further, several autosomal genes, such as SF1, WT1, SOX and MIS, as well as a unique X chromosomal DAX1 were suggested to be associated with the development of gonadal sex in mammals. Therefore, the significance on the involvement of these genes in the molecular mechanism of mammalian sex determination should be also considered. Key Words sex determining gene, primary sex determination, mam- malian sex Introduction The clarification and understanding of the molecular mechanism responsible for mammalian sex determination is very interesting, because the presences of male and female sexes are not only surprising in its mysterious manifestations and graceful in its conception but also absolute benefits. In a mammalian system, the appearance of gonadal sex in a lineage of sex differentiation is most exciting, yet is still not sufficiently understood. -
Obesity-Induced Excess of 17-Hydroxyprogesterone Promotes Hyperglycemia Through Activation of Glucocorticoid Receptor
The Journal of Clinical Investigation RESEARCH ARTICLE Obesity-induced excess of 17-hydroxyprogesterone promotes hyperglycemia through activation of glucocorticoid receptor Yan Lu,1 E Wang,1 Ying Chen,1 Bing Zhou,1 Jiejie Zhao,1 Liping Xiang,1 Yiling Qian,1 Jingjing Jiang,1 Lin Zhao,1 Xuelian Xiong,1 Zhiqiang Lu,1 Duojiao Wu,2 Bin Liu,1,3 Jing Yan,4 Rong Zhang,4,5 Huijie Zhang,6 Cheng Hu,4,5,7 and Xiaoying Li1 1Key Laboratory of Metabolism and Molecular Medicine, Ministry of Education and Department of Endocrinology and Metabolism, and 2Institute of Clinical Science, Shanghai Institute of Clinical Bioinformatics, Zhongshan Hospital, Fudan University, Shanghai, China. 3Jiangsu Key Laboratory of Marine Pharmaceutical Compound Screening, College of Pharmacy, Jiangsu Ocean University, Lianyungang, China. 4Department of Endocrinology and Metabolism, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, and 5Shanghai Diabetes Institute, Shanghai Key Laboratory of Diabetes Mellitus, Shanghai Clinical Center for Diabetes, Shanghai, China. 6Department of Endocrinology and Metabolism, Nanfang Hospital, Southern Medical University, Guangzhou, China. 7Institute for Metabolic Disease, Fengxian Central Hospital, Southern Medical University, Shanghai, China. Type 2 diabetes mellitus (T2DM) has become an expanding global public health problem. Although the glucocorticoid receptor (GR) is an important regulator of glucose metabolism, the relationship between circulating glucocorticoids (GCs) and the features of T2DM remains controversial. Here, we show that 17-hydroxyprogesterone (17-OHP), an intermediate steroid in the biosynthetic pathway that converts cholesterol to cortisol, binds to and stimulates the transcriptional activity of GR. Hepatic 17-OHP concentrations are increased in diabetic mice and patients due to aberrantly increased expression of Cyp17A1. -
A Primer on the Use of Mouse Models for Identifying Direct Sex Chromosome Effects That Cause Sex Differences in Non-Gonadal Tissues Paul S
Burgoyne and Arnold Biology of Sex Differences (2016) 7:68 DOI 10.1186/s13293-016-0115-5 REVIEW Open Access A primer on the use of mouse models for identifying direct sex chromosome effects that cause sex differences in non-gonadal tissues Paul S. Burgoyne1 and Arthur P. Arnold2* Abstract In animals with heteromorphic sex chromosomes, all sex differences originate from the sex chromosomes, which are the only factors that are consistently different in male and female zygotes. In mammals, the imbalance in Y gene expression, specifically the presence vs. absence of Sry, initiates the differentiation of testes in males, setting up lifelong sex differences in the level of gonadal hormones, which in turn cause many sex differences in the phenotype of non-gonadal tissues. The inherent imbalance in the expression of X and Y genes, or in the epigenetic impact of X and Y chromosomes, also has the potential to contribute directly to the sexual differentiation of non-gonadal cells. Here, we review the research strategies to identify the X and Y genes or chromosomal regions that cause direct, sexually differentiating effects on non-gonadal cells. Some mouse models are useful for separating the effects of sex chromosomes from those of gonadal hormones. Once direct “sex chromosome effects” are detected in these models, further studies are required to narrow down the list of candidate X and/or Y genes and then to identify the sexually differentiating genes themselves. Logical approaches to the search for these genes are reviewed here. Keywords: Sex determination, Sexual differentiation, Sex chromosomes, X chromosome, Y chromosome, Testosterone, Estradiol, Gonadal hormones Background complement, including differences in the parental source In animals with an unmatched (heteromorphic) pair of of the X chromosome. -
The Spectrum of Phenotypes Associated with Mutations In
European Journal of Endocrinology (2009) 161 237–242 ISSN 0804-4643 CLINICAL STUDY The spectrum of phenotypes associated with mutations in steroidogenic factor 1 (SF-1, NR5A1, Ad4BP) includes severe penoscrotal hypospadias in 46,XY males without adrenal insufficiency Birgit Ko¨hler, Lin Lin1, Inas Mazen2, Cigdem Cetindag, Heike Biebermann, Ilker Akkurt3, Rainer Rossi4, Olaf Hiort5, Annette Gru¨ters and John C Achermann1 Department of Pediatric Endocrinology, University Children’s Hospital, Charite´, Humboldt University, Augustenburger Platz 1, 13353 Berlin, Germany, 1Developmental Endocrinology Research Group, UCL Institute of Child Health, University College London, London, UK, 2Department of Clinical Genetics, National Research Center, Cairo, Egypt, 3Children’s Hospital Altona, Hamburg, Germany, 4Children’s Hospital Neuko¨lln, Berlin, Germany and 5Division of Pediatric Endocrinology, Department of Pediatrics, University of Lu¨beck, Lu¨beck, Germany (Correspondence should be addressed to B Ko¨hler; Email: [email protected]) Abstract Objective: Hypospadias is a frequent congenital anomaly but in most cases an underlying cause is not found. Steroidogenic factor 1 (SF-1, NR5A1, Ad4BP) is a key regulator of human sex development and an increasing number of SF-1 (NR5A1) mutations are reported in 46,XY disorders of sex development (DSD). We hypothesized that NR5A1 mutations could be identified in boys with hypospadias. Design and methods: Mutational analysis of NR5A1 in 60 individuals with varying degrees of hypospadias from the German DSD network. Results: Heterozygous NR5A1 mutations were found in three out of 60 cases. These three individuals represented the most severe end of the spectrum studied as they presented with penoscrotal hypospadias, variable androgenization of the phallus and undescended testes (three out of 20 cases (15%) with this phenotype). -
Expression Profiling of Sexually Dimorphic Genes in the Japanese
www.nature.com/scientificreports OPEN Expression profling of sexually dimorphic genes in the Japanese quail, Coturnix japonica Miki Okuno1,5, Shuntaro Miyamoto2,5, Takehiko Itoh1, Masahide Seki3, Yutaka Suzuki3, Shusei Mizushima2,4 & Asato Kuroiwa2,4* Research on avian sex determination has focused on the chicken. In this study, we established the utility of another widely used animal model, the Japanese quail (Coturnix japonica), for clarifying the molecular mechanisms underlying gonadal sex diferentiation. In particular, we performed comprehensive gene expression profling of embryonic gonads at three stages (HH27, HH31 and HH38) by mRNA-seq. We classifed the expression patterns of 4,815 genes into nine clusters according to the extent of change between stages. Cluster 2 (characterized by an initial increase and steady levels thereafter), including 495 and 310 genes expressed in males and females, respectively, contained fve key genes involved in gonadal sex diferentiation. A GO analysis showed that genes in this cluster are related to developmental processes including reproductive structure development and developmental processes involved in reproduction were signifcant, suggesting that expression profling is an efective approach to identify novel candidate genes. Based on RNA-seq data and in situ hybridization, the expression patterns and localization of most key genes for gonadal sex diferentiation corresponded well to those of the chicken. Our results support the efectiveness of the Japanese quail as a model for studies gonadal sex diferentiation in birds. In birds, males are homogametic (ZZ) and females are heterogametic (ZW). Te sex determination mechanism involving gene(s) on the sex chromosome is highly conserved among birds. In chickens, sex determination is thought to occur afer embryonic day (E) 4.5, corresponding to Hamburger and Hamilton stage1 24 (HH24). -
The Role of Orphan Nuclear Receptor DAX-1 (NR0B1)
The University of San Francisco USF Scholarship: a digital repository @ Gleeson Library | Geschke Center Master's Theses Theses, Dissertations, Capstones and Projects Fall 12-12-2017 The oler of orphan nuclear receptor DAX-1 (NR0B1) in human breast cancer cells: expression, proliferation and metastasis Erin Dishington [email protected] Follow this and additional works at: https://repository.usfca.edu/thes Part of the Biology Commons, and the Genetics Commons Recommended Citation Dishington, Erin, "The or le of orphan nuclear receptor DAX-1 (NR0B1) in human breast cancer cells: expression, proliferation and metastasis" (2017). Master's Theses. 269. https://repository.usfca.edu/thes/269 This Thesis is brought to you for free and open access by the Theses, Dissertations, Capstones and Projects at USF Scholarship: a digital repository @ Gleeson Library | Geschke Center. It has been accepted for inclusion in Master's Theses by an authorized administrator of USF Scholarship: a digital repository @ Gleeson Library | Geschke Center. For more information, please contact [email protected]. Abstract The orphan nuclear hormone receptor DAX-1 (Dosage Sensitive Sex Reversal, Adrenal Hypoplasia Congenita on the X Chromosome, gene 1) plays an important role in the development of adrenal and gonadal tissues and functions as a global negative-regulator of steroidogenesis. In addition, it is known to be involved in several diseases including some cancers. Herein, we describe our examination of the role of DAX-1 in breast cancer, specifically its influence on proliferation and metastasis and its expression during progressive stages of disease. In an effort to understand how DAX-1 influences breast cancer cell proliferation and metastasis, we used MCF7 breast cancer cells and MCF10A normal breast cells and manipulated their DAX-1 expression to increase DAX-1 expression by adenovirus infection in MCF7 cells, or knockdown expression of DAX-1 through the use of RNAi in MCF10A cells. -
Role of Estrogen Receptor-Β in Endometriosis
39 Role of Estrogen Receptor-β in Endometriosis Serdar E. Bulun, M.D. 1 Diana Monsavais, B.S. 1 Mary Ellen Pavone, M.D. 1 Matthew Dyson, Ph.D. 1 Qing Xue, M.D., Ph.D. 2 Erkut Attar, M.D. 3 Hideki Tokunaga, M.D., Ph.D. 4 Emily J. Su, M.D., M.S. 1 1 Division of Reproductive Biology Research, Department Obstetrics Address for correspondence and reprint requests Serdar E. Bulun, and Gynecology, Northwestern University Feinberg School of M.D., Division of Reproductive Biology Research, Department Medicine, Chicago, Illinois Obstetrics and Gynecology, Northwestern University Feinberg School 2 Department of Obstetrics and Gynecology, First Hospital of Peking of Medicine, 303 E. Superior Street, 4-123, Chicago, IL 60611 University, Beijing, P.R. China (e-mail: [email protected]). 3 Division of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Istanbul University Capa School of Medicine, Istanbul, Turkiye 4 Department of Obstetrics and Gynecology, Tohoku University School of Medicine, Sendai, Japan Semin Reprod Med 2012; 30:39–45 Abstract Endometriosis is an estrogen-dependent disease. The biologically active estrogen, estradiol, aggravates the pathological processes (e.g., inflammation and growth) and the symptoms (e.g., pain) associated with endometriosis. Abundant quantities of estradiol are available for endometriotic tissue via several mechanisms including local Keywords aromatase expression. The question remains, then, what mediates estradiol action. ► ER-β Because estrogen receptor (ER)β levels in endometriosis are >100 times higher than ► nuclear receptor those in endometrial tissue, this review focuses on this nuclear receptor. Deficient ► estrogen methylation of the ERβ promoter results in pathological overexpression of ERβ in ► DNA methylation endometriotic stromal cells.