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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
New Or Interesting Lichens and Lichenicolous Fungi from Belgium, Luxembourg and Northern France
New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and northern France. X Emmanuël SÉRUSIAUX1, Paul DIEDERICH2, Damien ERTZ3, Maarten BRAND4 & Pieter VAN DEN BOOM5 1 Plant Taxonomy and Conservation Biology Unit, University of Liège, Sart Tilman B22, B-4000 Liège, Belgique ([email protected]) 2 Musée national d’histoire naturelle, 25 rue Munster, L-2160 Luxembourg, Luxembourg ([email protected]) 3 Jardin Botanique National de Belgique, Domaine de Bouchout, B-1860 Meise, Belgium ([email protected]) 4 Klipperwerf 5, NL-2317 DX Leiden, the Netherlands ([email protected]) 5 Arafura 16, NL-5691 JA Son, the Netherlands ([email protected]) Sérusiaux, E., P. Diederich, D. Ertz, M. Brand & P. van den Boom, 2006. New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and northern France. X. Bul- letin de la Société des naturalistes luxembourgeois 107 : 63-74. Abstract. Review of recent literature and studies on large and mainly recent collections of lichens and lichenicolous fungi led to the addition of 35 taxa to the flora of Belgium, Lux- embourg and northern France: Abrothallus buellianus, Absconditella delutula, Acarospora glaucocarpa var. conspersa, Anema nummularium, Anisomeridium ranunculosporum, Artho- nia epiphyscia, A. punctella, Bacidia adastra, Brodoa atrofusca, Caloplaca britannica, Cer- cidospora macrospora, Chaenotheca laevigata, Collemopsidium foveolatum, C. sublitorale, Coppinsia minutissima, Cyphelium inquinans, Involucropyrenium squamulosum, Lecania fructigena, Lecanora conferta, L. pannonica, L. xanthostoma, Lecidea variegatula, Mica- rea micrococca, Micarea subviridescens, M. vulpinaris, Opegrapha prosodea, Parmotrema stuppeum, Placynthium stenophyllum var. isidiatum, Porpidia striata, Pyrenidium actinellum, Thelopsis rubella, Toninia physaroides, Tremella coppinsii, Tubeufia heterodermiae, Verru- caria acrotella and Vezdaea stipitata. -
Antimicrobial Activity of Extracts of the Lichen Parmelia Sulcata and Its
Antimicrobial Activity of Extracts of the Lichen Parmelia sulcata and its Salazinic Acid Constituent Mehmet Candana, Meral Yılmaza, Turgay Tayb, Murat Erdemb, and Ays¸en Özdemir Türka,* a Anadolu University, Department of Biology, 26470 Eskis¸ehir, Turkey. Fax: +90 2223204910. E-mail: [email protected] b Anadolu University, Department of Chemistry, Fig. 1. Chemical structure of salazinic acid. 26470 Eskis¸ehir, Turkey * Author for correspondence and reprint requests Z. Naturforsch. 62c, 619Ð621 (2007), 2001). That is why many secondary metabolites in received March 8/May 4, 2007 lichens are antigrowth, antimicrobial or antiherbi- The antimicrobial activity of the acetone, chloroform, vore agents (Huneck, 1999, 2001, 2006; Fahselt, diethyl ether, methanol, and petroleum ether extracts of the lichen Parmelia sulcata and its salazinic acid constitu- 1994). It appears that more than 50% of the lichen ent have been screened against twenty eight food-borne species have substances with antimicrobial activity bacteria and fungi. All of the extracts with the exception against human disease organisms. The antibiotic of the petroleum ether extract showed antimicrobial ac- effect of a number of lichen metabolites was gen- tivity against Aeromonas hydrophila, Bacillus cereus, Ba- cillus subtilis, Listeria monocytogenes, Proteus vulgaris, erally found to be significant for Gram-positive Yersinia enterocolitica, Staphylococcus aureus, Strepto- bacteria, but ineffective against Gram-negative coccus faecalis, Candida albicans, Candida glabrata, As- bacteria. pergillus niger, Aspergillus fumigatus, and Penicillium no- This study was carried out to screen the antimic- tatum. Salazinic acid did not show antimicrobial activity against L. monocytogenes, P. vulgaris, Y. enterocolitica, robial activity of extracts of the lichen Parmelia and S. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Habitat Quality and Disturbance Drive Lichen Species Richness in a Temperate Biodiversity Hotspot
Oecologia (2019) 190:445–457 https://doi.org/10.1007/s00442-019-04413-0 COMMUNITY ECOLOGY – ORIGINAL RESEARCH Habitat quality and disturbance drive lichen species richness in a temperate biodiversity hotspot Erin A. Tripp1,2 · James C. Lendemer3 · Christy M. McCain1,2 Received: 23 April 2018 / Accepted: 30 April 2019 / Published online: 15 May 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The impacts of disturbance on biodiversity and distributions have been studied in many systems. Yet, comparatively less is known about how lichens–obligate symbiotic organisms–respond to disturbance. Successful establishment and development of lichens require a minimum of two compatible yet usually unrelated species to be present in an environment, suggesting disturbance might be particularly detrimental. To address this gap, we focused on lichens, which are obligate symbiotic organ- isms that function as hubs of trophic interactions. Our investigation was conducted in the southern Appalachian Mountains, USA. We conducted complete biodiversity inventories of lichens (all growth forms, reproductive modes, substrates) across 47, 1-ha plots to test classic models of responses to disturbance (e.g., linear, unimodal). Disturbance was quantifed in each plot using a standardized suite of habitat quality variables. We additionally quantifed woody plant diversity, forest density, rock density, as well as environmental factors (elevation, temperature, precipitation, net primary productivity, slope, aspect) and analyzed their impacts on lichen biodiversity. Our analyses recovered a strong, positive, linear relationship between lichen biodiversity and habitat quality: lower levels of disturbance correlate to higher species diversity. With few exceptions, additional variables failed to signifcantly explain variation in diversity among plots for the 509 total lichen species, but we caution that total variation in some of these variables was limited in our study area. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Cladoniaceae, Ascomycota)
Persoonia 37, 2016: 1–12 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X688081 Sharpening the species boundaries in the Cladonia mediterranea complex (Cladoniaceae, Ascomycota) R. Pino-Bodas1, I. Pérez-Vargas2, S. Stenroos1, T. Ahti1, A.R. Burgaz 3 Key words Abstract The complex Cladonia mediterranea belongs to the section Impexae and is formed by C. azorica, C. maca ronesica and C. mediterranea. These species are basically distributed in the Mediterranean and Macaronesian coalescence Regions. In the present work the limits between the species of this complex are re-examined. To this end, the mor- Iberian Peninsula phological characters were studied along with the secondary metabolites and the DNA sequences from three loci integrative taxonomy (ITS rDNA, IGS rDNA and rpb2). The morphological data were studied by principal component analysis (PCA), while lichen forming fungi the DNA sequences were analyzed using several approaches available to delimit species: genealogical concor dance Macaronesia phylogenetic species recognition, species tree (BEAST* and spedeSTEM) and cohesion species recognition. In molecular systematic addition, the genealogical sorting index was used in order to assess the monophyly of the species. The different species delimitation procedures used in our study turned out to be highly congruent with respect to the limits they establish, but these taxonomy limits are not the ones separating the prior species. Either the morphological analysis or the different approaches to species delimitation indicate that C. mediterranea is a different species from C. macaronesica, while C. azorica and C. macaronesica, which are reduced to synonyms of C. portentosa, constitute a separate lineage. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Desktop Biodiversity Report
Desktop Biodiversity Report Land at Balcombe Parish ESD/14/747 Prepared for Katherine Daniel (Balcombe Parish Council) 13th February 2014 This report is not to be passed on to third parties without prior permission of the Sussex Biodiversity Record Centre. Please be aware that printing maps from this report requires an appropriate OS licence. Sussex Biodiversity Record Centre report regarding land at Balcombe Parish 13/02/2014 Prepared for Katherine Daniel Balcombe Parish Council ESD/14/74 The following information is included in this report: Maps Sussex Protected Species Register Sussex Bat Inventory Sussex Bird Inventory UK BAP Species Inventory Sussex Rare Species Inventory Sussex Invasive Alien Species Full Species List Environmental Survey Directory SNCI M12 - Sedgy & Scott's Gills; M22 - Balcombe Lake & associated woodlands; M35 - Balcombe Marsh; M39 - Balcombe Estate Rocks; M40 - Ardingly Reservior & Loder Valley Nature Reserve; M42 - Rowhill & Station Pastures. SSSI Worth Forest. Other Designations/Ownership Area of Outstanding Natural Beauty; Environmental Stewardship Agreement; Local Nature Reserve; National Trust Property. Habitats Ancient tree; Ancient woodland; Ghyll woodland; Lowland calcareous grassland; Lowland fen; Lowland heathland; Traditional orchard. Important information regarding this report It must not be assumed that this report contains the definitive species information for the site concerned. The species data held by the Sussex Biodiversity Record Centre (SxBRC) is collated from the biological recording community in Sussex. However, there are many areas of Sussex where the records held are limited, either spatially or taxonomically. A desktop biodiversity report from SxBRC will give the user a clear indication of what biological recording has taken place within the area of their enquiry. -
Red List of Estonian Lichens: Revision in 2019
Folia Cryptog. Estonica, Fasc. 56: 63–76 (2019) https://doi.org/10.12697/fce.2019.56.07 Red List of Estonian lichens: revision in 2019 Piret Lõhmus1, Liis Marmor2, Inga Jüriado1, Ave Suija1,3, Ede Oja1, Polina Degtjarenko1,4, Tiina Randlane1 1University of Tartu, Institute of Ecology and Earth Sciences, Lai 40, 51005 Tartu, Estonia. E-mail: [email protected] 2E-mail: [email protected] 3University of Tartu, Natural History Museum, Vanemuise 46, 51014 Tartu, Estonia 4Swiss Federal Research Institute WSL, Biodiversity and Conservation Biology, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland Abstract: The second assessment of the threat status of Estonian lichens based on IUCN system was performed in 2019. The main basis for choosing the species to be currently assessed was the list of legally protected lichens and the list of species assigned to the Red List Categories RE–DD in 2008. Species that had been assessed as Least Concern (LC) in 2008 were not evaluated. Altogether, threat status of 229 lichen species was assessed, among them 181 were assigned to the threatened categories (CR, EN, VU), while no species were assigned to the LC category. Compared to the previous red list, category was deteriorated for 58% and remained the same for 32% of species. In Estonia, threatened lichens inhabit mainly forests (particularly dry boreal and nemoral deciduous stands), alvar grasslands, sand dunes and various saxicolous habitats. Therefore, the most frequent threat factors were forest cutting and overgrowing of alvars and dunes (main threat factor for 96 and 70 species, respectfully). Kokkuvõte: 2019. aastal viidi läbi teistkordne IUCN süsteemil põhinev Eesti samblike ohustatuse hindamine.