Addressing the Selectivity of Enzyme Biosensors: Solutions and Perspectives
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COMBINED LIST of Particularly Hazardous Substances
COMBINED LIST of Particularly Hazardous Substances revised 2/4/2021 IARC list 1 are Carcinogenic to humans list compiled by Hector Acuna, UCSB IARC list Group 2A Probably carcinogenic to humans IARC list Group 2B Possibly carcinogenic to humans If any of the chemicals listed below are used in your research then complete a Standard Operating Procedure (SOP) for the product as described in the Chemical Hygiene Plan. Prop 65 known to cause cancer or reproductive toxicity Material(s) not on the list does not preclude one from completing an SOP. Other extremely toxic chemicals KNOWN Carcinogens from National Toxicology Program (NTP) or other high hazards will require the development of an SOP. Red= added in 2020 or status change Reasonably Anticipated NTP EPA Haz list COMBINED LIST of Particularly Hazardous Substances CAS Source from where the material is listed. 6,9-Methano-2,4,3-benzodioxathiepin, 6,7,8,9,10,10- hexachloro-1,5,5a,6,9,9a-hexahydro-, 3-oxide Acutely Toxic Methanimidamide, N,N-dimethyl-N'-[2-methyl-4-[[(methylamino)carbonyl]oxy]phenyl]- Acutely Toxic 1-(2-Chloroethyl)-3-(4-methylcyclohexyl)-1-nitrosourea (Methyl-CCNU) Prop 65 KNOWN Carcinogens NTP 1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea (CCNU) IARC list Group 2A Reasonably Anticipated NTP 1-(2-Chloroethyl)-3-cyclohexyl-1-nitrosourea (CCNU) (Lomustine) Prop 65 1-(o-Chlorophenyl)thiourea Acutely Toxic 1,1,1,2-Tetrachloroethane IARC list Group 2B 1,1,2,2-Tetrachloroethane Prop 65 IARC list Group 2B 1,1-Dichloro-2,2-bis(p -chloropheny)ethylene (DDE) Prop 65 1,1-Dichloroethane -
Synergistic Chemo/Biocatalytic Synthesis of Alkaloidal Tetrahydroquinolines
This is a repository copy of Synergistic Chemo/Biocatalytic Synthesis of Alkaloidal Tetrahydroquinolines. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/133028/ Version: Accepted Version Article: Cosgrove, SC, Hussain, S, Turner, NJ et al. (1 more author) (2018) Synergistic Chemo/Biocatalytic Synthesis of Alkaloidal Tetrahydroquinolines. ACS Catalysis, 8 (6). pp. 5570-5573. ISSN 2155-5435 https://doi.org/10.1021/acscatal.8b01220 (c) 2018, American Chemical Society. This is an author produced version of a paper published in ACS Catalysis. Uploaded in accordance with the publisher's self-archiving policy. Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Synergistic chemo/biocatalytic synthesis of alkaloidal tetrahydroquinolines Sebastian C. Cosgrove,1,2 Shahed Hussain,1 Nicholas J. Turner*1 and Stephen P. Marsden*2 1School of Chemistry, University of Manchester, Manchester Institute of Biotechnology, 131 Princess Street, Manches- ter M1 7DN, United Kingdom 2Institute of Process Research and Development and School of Chemistry, University of Leeds, Leeds, LS2 9JT, United Kingdom ABSTRACT: The power of complementary chemo- and biocatalytic transformations is demonstrated in the asymmetric syn- thesis of 2-substituted tetrahydroquinolines. -
Polyamines and Transglutaminases: Biological, Clinical, and Biotechnological Perspectives
Amino Acids (2014) 46:475–485 DOI 10.1007/s00726-014-1688-0 EDITORIAL Polyamines and transglutaminases: biological, clinical, and biotechnological perspectives Enzo Agostinelli Received: 3 January 2014 / Accepted: 27 January 2014 / Published online: 20 February 2014 Ó Springer-Verlag Wien 2014 Preface Europe. The ancient name of Istanbul was Bisantium, a city founded by Greeks in 659 B.C. on the banks of the The history of polyamines dates back to the fifteenth cen- Bosporus. Bisantium was renamed Constantinopolis in tury when spermine was discovered by Antoni van Leeu- honor of the Roman emperor Constantine I, becoming a wenhoek [born in Delft, Holland (1632–1723)], and yet it center of Greek culture and Christianity. Throughout its took many years before serious attention was given to long history, Istanbul (the old Constantinopolis) was the understanding the role of spermine or other polyamines in capital of three important empires: Roman, Byzantine, and the biology of living cells. It is now clear that regulation of Ottoman. Today, Istanbul as one of the largest cities in the polyamine homeostasis is complex and has excited poly- world is also one of the European capitals of culture while amine researchers who have continued to focus on this its historic areas are part of the UNESCO list of World productive area of research. Therefore, enough new Cultural Heritage. research findings have prompted to organize conferences This Special Issue of amino acids brings together 28 and congresses worldwide to disseminate the new knowl- peer-reviewed -
Development of Swiss Biotechnology Beyond the Biopharmaceutical Sector in Memoriam Prof
BUILDING BRIDGES BETWEEN BIOTECHNOLOGY AND CHEMISTRY – IN MEMORIAM ORESTE GHISALBA CHIMIA 2020, 74, No. 5 345 doi:10.2533/chimia.2020.345 Chimia 74 (2020) 345–359 © H.P. Meyer and O. Werbitzky Development of Swiss Biotechnology Beyond the Biopharmaceutical Sector In memoriam Prof. Dr. Oreste Ghisalba (1946–2018) Hans-Peter Meyera* and Oleg Werbitzkyb Abstract: Although diverse, the potential business opportunities for biotechnology outside the biopharmaceutical market are very large. White biotechnology can offer sustainable operations and products, while investments tend to be lower than those in red biotechnology. But a number of bottlenecks and roadblocks in Switzerland must be removed to realise the full potential of white biotechnology. This was also the point of view of Oreste Ghisalba, who wanted to be part of a new initiative to facilitate the creation of additional business, new pro- cesses and new products. This initiative requires the identification and the use of synergies and a much better cooperation between academia and industry through targeted networking. Unfortunately, we must carry on with this task without Oreste, whom we will miss for his deep knowledge and friendship. Keywords: Bio-based · Fine chemicals · Industrial biotechnology · Swiss economy · White biotechnology Hans-Peter Meyer holds a PhD in micro- venture partners and Managing Director of NC Health Sciences biology from the University of Fribourg since 2015. (Switzerland). He spent three years post- graduate and postdoc studies at the STFI 1. A Short History of the Swiss Biotechnology Industry in Stockholm (Sweden), the University The Swiss pharmaceutical and chemical industries have been of Pennsylvania and Lehigh University in responsible for almost half of the country’s exports for many years the USA. -
Genome of Phaeocystis Globosa Virus Pgv-16T Highlights the Common Ancestry of the Largest Known DNA Viruses Infecting Eukaryotes
Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes Sebastien Santinia, Sandra Jeudya, Julia Bartolia, Olivier Poirota, Magali Lescota, Chantal Abergela, Valérie Barbeb, K. Eric Wommackc, Anna A. M. Noordeloosd, Corina P. D. Brussaardd,e,1, and Jean-Michel Claveriea,f,1 aStructural and Genomic Information Laboratory, Unité Mixte de Recherche 7256, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288 Marseille Cedex 9, France; bCommissariat à l’Energie Atomique–Institut de Génomique, 91057 Evry Cedex, France; cDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE 19711; dDepartment of Biological Oceanography, Royal Netherlands Institute for Sea Research, NL-1790 AB Den Burg (Texel), The Netherlands; eAquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands; and fService de Santé Publique et d’Information Médicale, Hôpital de la Timone, Assistance Publique–Hôpitaux de Marseille, FR-13385 Marseille, France Edited by James L. Van Etten, University of Nebraska, Lincoln, NE, and approved May 1, 2013 (received for review February 22, 2013) Large dsDNA viruses are involved in the population control of many viruses: 730 kb and 1.28 Mb for CroV and Megavirus chilensis, globally distributed species of eukaryotic phytoplankton and have respectively. Other studies, targeting virus-specific genes [e.g., a prominent role in bloom termination. The genus Phaeocystis (Hap- DNA polymerase B (8) or capsid proteins (9)] have suggested tophyta, Prymnesiophyceae) includes several high-biomass-forming a close phylogenetic relationship between Mimivirus and several phytoplankton species, such as Phaeocystis globosa, the blooms of giant dsDNA viruses infecting various unicellular algae such as which occur mostly in the coastal zone of the North Atlantic and the Pyramimonas orientalis (Chlorophyta, Prasinophyceae), Phaeocys- North Sea. -
Defining Novel Plant Polyamine Oxidase Subfamilies Through
Bordenave et al. BMC Evolutionary Biology (2019) 19:28 https://doi.org/10.1186/s12862-019-1361-z RESEARCHARTICLE Open Access Defining novel plant polyamine oxidase subfamilies through molecular modeling and sequence analysis Cesar Daniel Bordenave1, Carolina Granados Mendoza2, Juan Francisco Jiménez Bremont3, Andrés Gárriz1 and Andrés Alberto Rodríguez1* Abstract Background: The polyamine oxidases (PAOs) catabolize the oxidative deamination of the polyamines (PAs) spermine (Spm) and spermidine (Spd). Most of the phylogenetic studies performed to analyze the plant PAO family took into account only a limited number and/or taxonomic representation of plant PAOs sequences. Results: Here, we constructed a plant PAO protein sequence database and identified four subfamilies. Subfamily PAO back conversion 1 (PAObc1) was present on every lineage included in these analyses, suggesting that BC-type PAOs might play an important role in plants, despite its precise function is unknown. Subfamily PAObc2 was exclusively present in vascular plants, suggesting that t-Spm oxidase activity might play an important role in the development of the vascular system. The only terminal catabolism (TC) PAO subfamily (subfamily PAOtc) was lost in Superasterids but it was present in all other land plants. This indicated that the TC-type reactions are fundamental for land plants and that their function could being taken over by other enzymes in Superasterids. Subfamily PAObc3 was the result of a gene duplication event preceding Angiosperm diversification, followed by a gene extinction in Monocots. Differential conserved protein motifs were found for each subfamily of plant PAOs. The automatic assignment using these motifs was found to be comparable to the assignment by rough clustering performed on this work. -
Cellular and Animal Model Studies on the Growth Inhibitory Effects of Polyamine Analogues on Breast Cancer
medical sciences Review Cellular and Animal Model Studies on the Growth Inhibitory Effects of Polyamine Analogues on Breast Cancer T. J. Thomas 1,* ID and Thresia Thomas 2,† 1 Department of Medicine, Rutgers Robert Wood Johnson Medical School and Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, 675 Hoes Lane West, KTL Room N102, Piscataway, NJ 08854, USA 2 Retired from Department of Environmental and Occupational Medicine, Rutgers Robert Wood Johnson Medical School and Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, 675 Hoes Lane West, Piscataway, NJ 08854, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-732-235-5852 † Present address: 40 Caldwell Drive, Princeton, NJ 08540, USA. Received: 28 January 2018; Accepted: 6 March 2018; Published: 13 March 2018 Abstract: Polyamine levels are elevated in breast tumors compared to those of adjacent normal tissues. The female sex hormone, estrogen is implicated in the origin and progression of breast cancer. Estrogens stimulate and antiestrogens suppress the expression of polyamine biosynthetic enzyme, ornithine decarboxylate (ODC). Using several bis(ethyl)spermine analogues, we found that these analogues inhibited the proliferation of estrogen receptor-positive and estrogen receptor negative breast cancer cells in culture. There was structure-activity relationship in the efficacy of these compounds in suppressing cell growth. The activity of ODC was inhibited by these compounds, whereas the activity of the catabolizing enzyme, spermidine/spermine N1-acetyl transferase (SSAT) was increased by 6-fold by bis(ethyl)norspermine in MCF-7 cells. In a transgenic mouse model of breast cancer, bis(ethyl)norspermine reduced the formation and growth of spontaneous mammary tumor. -
Distribution of Membrane-Bound Monoamine Oxidase in Bacteria
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Oct. 1979, p. 565-569 Vol. 38, No. 4 0099-2240/79/10-0565/05$02.00/0 Distribution of Membrane-Bound Monoamine Oxidase in Bacteria YOSHIKATSU MUROOKA,* NOBUYUKI DOI, AND TOKUYA HARADA The Institute ofScientific and Industrial Research, Osaka University, Yamadakami, Suita, Osaka (565), Japan Received for publication 22 March 1979 The distribution of membrane-bound monoamine oxidase in 30 strains of various bacteria was studied. Monoamine oxidase was determined by using an ammonia-selective electrode; analyses were sensitive and easy to perform. The enzyme was found in some strains of the family Enterobacteriaceae, such as Klebsiella, Enterobacter, Escherichia, Salmonella, Serratia, and Proteus. Among strains of other families of bacteria tested, only Pseudomonas aeruginosa IFO 3901, Micrococcus luteus IFO 12708, and Brevibacterium ammoniagenes IAM 1641 had monoamine oxidase activity. In all of these bacteria except B. ammoniagenes, monoamine oxidase was induced by tyramine and was highly specific for tyramine, octopamine, dopamine, and norepinephrine. The enzyme in two strains oxidized histamine or benzylamine. Correlations between the distri- butions of membrane-bound monoamine oxidase and arylsulfatase synthesized in the presence of tyramine were discussed. Monoamine oxidase catalyzes the oxidative monoamine oxidase had broad substrate speci- deamination of monoamines by the following ficity, the enzyme in bacteria can be assayed reaction: R-CH2NH2 + 02+ H20 -+ R-CHO + conveniently by potentiometric measurement of NH3 + H202. ammonia formation with an ammonia-selective The enzyme usually has a broad substrate electrode by the method used for the brain en- specificity in animals and plays a major role in zyme by Meyerson et al. -
Biological Phosphorylation of an Unnatural Base Pair (UBP) Using a Drosophila Melanogaster Deoxynucleoside Kinase (Dmdnk) Mutant
RESEARCH ARTICLE Biological phosphorylation of an Unnatural Base Pair (UBP) using a Drosophila melanogaster deoxynucleoside kinase (DmdNK) mutant Fei Chen1,2,3☯*, Yuan Zhang4☯, Ashley B. Daugherty5, Zunyi Yang3, Ryan Shaw3, Mengxing Dong1,2, Stefan Lutz5, Steven A. Benner3* a1111111111 1 CAS Key Laboratory of Genome Sciences & Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China, 2 University of Chinese Academy of Sciences, Beijing, China, 3 Foundation for a1111111111 Applied Molecular Evolution (FfAME), Alachua, Florida, United States of America, 4 College of Chemistry, a1111111111 Beijing Normal University, Beijing, China, 5 Department of Chemistry, Emory University School of Medicine, a1111111111 Atlanta, Georgia, United States of America a1111111111 ☯ These authors contributed equally to this work. * [email protected] (FC); [email protected] (SAB) OPEN ACCESS Abstract Citation: Chen F, Zhang Y, Daugherty AB, Yang Z, Shaw R, Dong M, et al. (2017) Biological One research goal for unnatural base pair (UBP) is to replicate, transcribe and translate phosphorylation of an Unnatural Base Pair (UBP) them in vivo. Accordingly, the corresponding unnatural nucleoside triphosphates must be using a Drosophila melanogaster deoxynucleoside available at sufficient concentrations within the cell. To achieve this goal, the unnatural kinase (DmdNK) mutant. PLoS ONE 12(3): nucleoside analogues must be phosphorylated to the corresponding nucleoside triphos- e0174163. https://doi.org/10.1371/journal. pone.0174163 phates by a cascade of three kinases. The first step is the monophosphorylation of unnatural deoxynucleoside catalyzed by deoxynucleoside kinases (dNK), which is generally consid- Editor: Giovanni Maga, Istituto di Genetica Molecolare, ITALY ered the rate limiting step because of the high specificity of dNKs. -
Thesis for Word XP
Thesis for doctoral degree (Ph.D.) 2010 Thesis for doctoral degree (Ph.D.) 2010 The role of 5’-nucleotidases and Deoxynucleoside Kinases in Responses to Nucleoside Analogues Saeedeh Mirzaee The role of 5’-nucleotidases and Deoxynucleoside Kinases in Responses to Nucleoside Analogues Saeedeh Mirzaee From the Department of Oncology and Pathology, Cancer Centrum Karolinska Karolinska Institutet, Stockholm, Sweden The role of 5’-nucleotidases and deoxynucleoside kinases in responses to nucleoside analogues Saeedeh Mirzaee Stockholm 2010 All previously published papers were reproduced with permission from the publisher. Published by Karolinska Institutet. Printed by Larserics Digital Print. © Saeedeh Mirzaee, 2010 ISBN 978-91-7409-908-9 Some look at things that are, and ask why. I dream of things that never were and ask why not? George Bernard Shaw ABSTRACT The efficacy of nucleoside analogues (NAs) in treating several hematological malignancies, solid tumors and viral infections is limited primarily by side-effects and the development of drug resistance. The aims of the present thesis were to elucidate mechanism(s) involved in tissue-specific toxicity associated with NA therapy, as well as the mechanisms underlying resistance to these drugs. The mRNA levels and activities of different cytosolic and mitochondrial deoxynucleoside kinases (dNKs) and 5'-nucleotidases (5'- NTs) exhibit a distinct pattern for each of a variety of mouse tissues. Heart and skeletal muscle, as well as adipose tissue demonstrate low levels of both the anabolic and catabolic enzymes, which may explain at least some of the adverse side-effects of NA treatment. A novel approach based on high-performance liquid chromatography (HPLC) revealed that each of 14 different mouse and rat tissues exhibits a unique profile of dNK and 5'NT activities, with 2-3-fold species differences for certain of these tissues. -
Deoxynucleoside Kinases Development in Vitro by Inhibition
Restoration of Adenosine Deaminase-Deficient Human Thymocyte Development In Vitro by Inhibition of Deoxynucleoside Kinases This information is current as of September 26, 2021. Michelle L. Joachims, Patrick A. Marble, Aletha B. Laurent, Peter Pastuszko, Marco Paliotta, Michael R. Blackburn and Linda F. Thompson J Immunol 2008; 181:8153-8161; ; doi: 10.4049/jimmunol.181.11.8153 Downloaded from http://www.jimmunol.org/content/181/11/8153 References This article cites 54 articles, 20 of which you can access for free at: http://www.jimmunol.org/ http://www.jimmunol.org/content/181/11/8153.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 26, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2008 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Restoration of Adenosine Deaminase-Deficient Human Thymocyte Development In Vitro by Inhibition of Deoxynucleoside Kinases1,2 Michelle L. Joachims,* Patrick A. Marble,* Aletha B. Laurent,* Peter Pastuszko,3† Marco Paliotta,† Michael R. -
Liquid and Gas Chromatographic Multi-Residue Pesticide Determination in Animal Tissues
Pestic. Sci. 1997, 49,56È64 Liquid and Gas Chromatographic Multi-residue Pesticide Determination in Animal Tissues Aurora Navas Dj az,* Angeles Garcj a Pareja & Francisco Garcj aSanchez Departamento de Qu•mica Anal•tica, Facultad de Ciencias, Universidad de Malaga, 29071-Malaga, Spain (Received 13 June 1995; revised version received 17 April 1996; accepted 16 August 1996) Abstract: A liquid chromatography multi-residue method with photometric detection has been developed. The method is applicable to the quantitative deter- mination of organochlorine (tetradifon, dicofol, chlorfenson, chlorobenzilate), organophosphorus (fenitrothion, azinphos-ethyl) and carbamate (pirimicarb) pesticides in animal tissues. The extracted residues are cleaned up by gel- permeation chromatography. A further fractionation on silica Sep-Pack car- tridges is included in the procedure. A gas chromatographic method with electron-capture detection for the analysis of the same pesticides was carried out and the results in the two cases compared. Lower detection and quantitation limits and similar recoveries of pesticides from spiked pig liver and brain samples were obtained by the LC method. Key words: liquid chromatography, gas chromatography, multi-residue pesti- cides, animal tissues 1 INTRODUCTION by various element-sensitive detectors, leading to reli- ance on mass spectrometry because of its ability to help Pest control in modern agriculture includes treatment to deÐne the structure. This has especially been true in of crops pre- and post-harvest with a variety of chemi- the case of the combination of gas chromatography cals, such as herbicides and insecticides in the pre- with mass spectrometry (GC/MS). One of the obvious harvest stage and with fungicides and rodenticides in Ðelds of application for this technique was the analysis the storage stage of the total harvest process.