Nature's Robots: a History of Proteins: Tanford, C., Reynolds, J
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Selective and Specific Ion Binding on Proteins at Physiologically-Relevant
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 585 (2011) 3126–3132 journal homepage: www.FEBSLetters.org Selective and specific ion binding on proteins at physiologically-relevant concentrations ⇑ Linlin Miao a, Haina Qin a, Patrice Koehl a,b, Jianxing Song a,c, a Department of Biological Sciences, Faculty of Science, National University of Singapore, Singapore b Department of Computer Science and Genome Center, University of California, Davis, CA 95616, USA c Department of Biochemistry, Yong Loo Lin School of Medicine and National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore article info abstract Article history: Insoluble proteins dissolved in unsalted water appear to have no well-folded tertiary structures. Received 30 July 2011 This raises a fundamental question as to whether being unstructured is due to the absence of salt Revised 25 August 2011 ions. To address this issue, we solubilized the insoluble ephrin-B2 cytoplasmic domain in unsalted Accepted 29 August 2011 water and first confirmed using NMR spectroscopy that it is only partially folded. Using NMR HSQC Available online 6 September 2011 titrations with 14 different salts, we further demonstrate that the addition of salt triggers no signif- Edited by Miguel De la Rosa icant folding of the protein within physiologically relevant ion concentrations. We reveal however that their 8 anions bind to the ephrin-B2 protein with high affinity and specificity at biologically-rel- evant concentrations. Interestingly, the binding is found to be both salt- and residue-specific. Keywords: Insoluble protein Ó 2011 Federation of European Biochemical Societies. -
Sequencing As a Way of Work
Edinburgh Research Explorer A new insight into Sanger’s development of sequencing Citation for published version: Garcia-Sancho, M 2010, 'A new insight into Sanger’s development of sequencing: From proteins to DNA, 1943-77', Journal of the History of Biology, vol. 43, no. 2, pp. 265-323. https://doi.org/10.1007/s10739-009- 9184-1 Digital Object Identifier (DOI): 10.1007/s10739-009-9184-1 Link: Link to publication record in Edinburgh Research Explorer Document Version: Peer reviewed version Published In: Journal of the History of Biology Publisher Rights Statement: © Garcia-Sancho, M. (2010). A new insight into Sanger’s development of sequencing: From proteins to DNA, 1943-77. Journal of the History of Biology, 43(2), 265-323. 10.1007/s10739-009-9184-1 General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 28. Sep. 2021 THIS IS AN ADVANCED DRAFT OF A PUBLISHED PAPER. REFERENCES AND QUOTATIONS SHOULD ALWAYS BE MADE TO THE PUBLISHED VERION, WHICH CAN BE FOUND AT: García-Sancho M. -
NATURE Facts and Theories Tn Protein Chemistry*
No. 3606, DEC. 10, 1938 NATURE 1023 Facts and Theories tn Protein Chemistry* JN the last decade, many investigations of an Viscosity measurements on anisotropic proteins exact nature have been made on the proteins may be correlated with the axial ratios of the in solution and in the solid phase. Unfortunately, corresponding molecular ellipsoids of rotation by by a dissipation of the available research energy means of equations proposed independently by among a wide variety of proteins and by a signal Kuhn, Burgers and Polson. From the axial ratio absence of co-operation among the researchers the molecular frictional coefficient may be cal themselves, less significant advances have been culated, and this in turn supplies the necessary made in the elucidation of fundamental principles information for calculating molecular weights from than would otherwise have been the case. It was diffusion data. Molecular weights thus obtained a happy inspiration, therefore, which brought from viscosity and diffusion data agree with the together most of the authorities on protein ultracentrifuge values only when Polson's equa chemistry in Europe at the Royal Society on tion, which has a purely empirical basis, is used. November 17 to compare their experiences and Studies on the peptic digestion of egg albumin discuss each other's difficulties. by Tiselius show that the decomposition products Prof. The Svedberg (Uppsala) opened the con have a much lower electrophoretic mobility than ference with a vigorous and notably wide survey the uncharged protein. This supports the view of recent developments in the physical chemistry that the constituent units of a protein particle are of the proteins. -
DNA: the Timeline and Evidence of Discovery
1/19/2017 DNA: The Timeline and Evidence of Discovery Interactive Click and Learn (Ann Brokaw Rocky River High School) Introduction For almost a century, many scientists paved the way to the ultimate discovery of DNA and its double helix structure. Without the work of these pioneering scientists, Watson and Crick may never have made their ground-breaking double helix model, published in 1953. The knowledge of how genetic material is stored and copied in this molecule gave rise to a new way of looking at and manipulating biological processes, called molecular biology. The breakthrough changed the face of biology and our lives forever. Watch The Double Helix short film (approximately 15 minutes) – hyperlinked here. 1 1/19/2017 1865 The Garden Pea 1865 The Garden Pea In 1865, Gregor Mendel established the foundation of genetics by unraveling the basic principles of heredity, though his work would not be recognized as “revolutionary” until after his death. By studying the common garden pea plant, Mendel demonstrated the inheritance of “discrete units” and introduced the idea that the inheritance of these units from generation to generation follows particular patterns. These patterns are now referred to as the “Laws of Mendelian Inheritance.” 2 1/19/2017 1869 The Isolation of “Nuclein” 1869 Isolated Nuclein Friedrich Miescher, a Swiss researcher, noticed an unknown precipitate in his work with white blood cells. Upon isolating the material, he noted that it resisted protein-digesting enzymes. Why is it important that the material was not digested by the enzymes? Further work led him to the discovery that the substance contained carbon, hydrogen, nitrogen and large amounts of phosphorus with no sulfur. -
Physics Today - February 2003
Physics Today - February 2003 Rosalind Franklin and the Double Helix Although she made essential contributions toward elucidating the structure of DNA, Rosalind Franklin is known to many only as seen through the distorting lens of James Watson's book, The Double Helix. by Lynne Osman Elkin - California State University, Hayward In 1962, James Watson, then at Harvard University, and Cambridge University's Francis Crick stood next to Maurice Wilkins from King's College, London, to receive the Nobel Prize in Physiology or Medicine for their "discoveries concerning the molecular structure of nucleic acids and its significance for information transfer in living material." Watson and Crick could not have proposed their celebrated structure for DNA as early in 1953 as they did without access to experimental results obtained by King's College scientist Rosalind Franklin. Franklin had died of cancer in 1958 at age 37, and so was ineligible to share the honor. Her conspicuous absence from the awards ceremony--the dramatic culmination of the struggle to determine the structure of DNA--probably contributed to the neglect, for several decades, of Franklin's role in the DNA story. She most likely never knew how significantly her data influenced Watson and Crick's proposal. Franklin was born 25 July 1920 to Muriel Waley Franklin and merchant banker Ellis Franklin, both members of educated and socially conscious Jewish families. They were a close immediate family, prone to lively discussion and vigorous debates at which the politically liberal, logical, and determined Rosalind excelled: She would even argue with her assertive, conservative father. Early in life, Rosalind manifested the creativity and drive characteristic of the Franklin women, and some of the Waley women, who were expected to focus their education, talents, and skills on political, educational, and charitable forms of community service. -
The Contributions of George Beadle and Edward Tatum
| PERSPECTIVES Biochemical Genetics and Molecular Biology: The Contributions of George Beadle and Edward Tatum Bernard S. Strauss1 Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, Illinois 60637 KEYWORDS George Beadle; Edward Tatum; Boris Ephrussi; gene action; history It will concern us particularly to take note of those cases in Genetics in the Early 1940s which men not only solved a problem but had to alter their mentality in the process, or at least discovered afterwards By the end of the 1930s, geneticists had developed a sophis- that the solution involved a change in their mental approach ticated, self-contained science. In particular, they were able (Butterfield 1962). to predict the patterns of inheritance of a variety of charac- teristics, most morphological in nature, in a variety of or- EVENTY-FIVE years ago, George Beadle and Edward ganisms although the favorites at the time were clearly Tatum published their method for producing nutritional S Drosophila andcorn(Zea mays). These characteristics were mutants in Neurospora crassa. Their study signaled the start of determined by mysterious entities known as “genes,” known a new era in experimental biology, but its significance is to be located at particular positions on the chromosomes. generally misunderstood today. The importance of the work Furthermore, a variety of peculiar patterns of inheritance is usually summarized as providing support for the “one gene– could be accounted for by alteration in chromosome struc- one enzyme” hypothesis, but its major value actually lay both ture and number with predictions as to inheritance pattern in providing a general methodology for the investigation of being quantitative and statistical. -
Peptide Chemistry up to Its Present State
Appendix In this Appendix biographical sketches are compiled of many scientists who have made notable contributions to the development of peptide chemistry up to its present state. We have tried to consider names mainly connected with important events during the earlier periods of peptide history, but could not include all authors mentioned in the text of this book. This is particularly true for the more recent decades when the number of peptide chemists and biologists increased to such an extent that their enumeration would have gone beyond the scope of this Appendix. 250 Appendix Plate 8. Emil Abderhalden (1877-1950), Photo Plate 9. S. Akabori Leopoldina, Halle J Plate 10. Ernst Bayer Plate 11. Karel Blaha (1926-1988) Appendix 251 Plate 12. Max Brenner Plate 13. Hans Brockmann (1903-1988) Plate 14. Victor Bruckner (1900- 1980) Plate 15. Pehr V. Edman (1916- 1977) 252 Appendix Plate 16. Lyman C. Craig (1906-1974) Plate 17. Vittorio Erspamer Plate 18. Joseph S. Fruton, Biochemist and Historian Appendix 253 Plate 19. Rolf Geiger (1923-1988) Plate 20. Wolfgang Konig Plate 21. Dorothy Hodgkins Plate. 22. Franz Hofmeister (1850-1922), (Fischer, biograph. Lexikon) 254 Appendix Plate 23. The picture shows the late Professor 1.E. Jorpes (r.j and Professor V. Mutt during their favorite pastime in the archipelago on the Baltic near Stockholm Plate 24. Ephraim Katchalski (Katzir) Plate 25. Abraham Patchornik Appendix 255 Plate 26. P.G. Katsoyannis Plate 27. George W. Kenner (1922-1978) Plate 28. Edger Lederer (1908- 1988) Plate 29. Hennann Leuchs (1879-1945) 256 Appendix Plate 30. Choh Hao Li (1913-1987) Plate 31. -
A Global Review on Short Peptides: Frontiers and Perspectives †
molecules Review A Global Review on Short Peptides: Frontiers and Perspectives † Vasso Apostolopoulos 1 , Joanna Bojarska 2,* , Tsun-Thai Chai 3 , Sherif Elnagdy 4 , Krzysztof Kaczmarek 5 , John Matsoukas 1,6,7, Roger New 8,9, Keykavous Parang 10 , Octavio Paredes Lopez 11 , Hamideh Parhiz 12, Conrad O. Perera 13, Monica Pickholz 14,15, Milan Remko 16, Michele Saviano 17, Mariusz Skwarczynski 18, Yefeng Tang 19, Wojciech M. Wolf 2,*, Taku Yoshiya 20 , Janusz Zabrocki 5, Piotr Zielenkiewicz 21,22 , Maha AlKhazindar 4 , Vanessa Barriga 1, Konstantinos Kelaidonis 6, Elham Mousavinezhad Sarasia 9 and Istvan Toth 18,23,24 1 Institute for Health and Sport, Victoria University, Melbourne, VIC 3030, Australia; [email protected] (V.A.); [email protected] (J.M.); [email protected] (V.B.) 2 Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland 3 Department of Chemical Science, Faculty of Science, Universiti Tunku Abdul Rahman, Kampar 31900, Malaysia; [email protected] 4 Botany and Microbiology Department, Faculty of Science, Cairo University, Gamaa St., Giza 12613, Egypt; [email protected] (S.E.); [email protected] (M.A.) 5 Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland; [email protected] (K.K.); [email protected] (J.Z.) 6 NewDrug, Patras Science Park, 26500 Patras, Greece; [email protected] 7 Department of Physiology and Pharmacology, -
New Website Details Linus Pauling's Breakthroughs in Protein Structure 18 March 2013
New website details Linus Pauling's breakthroughs in protein structure 18 March 2013 The Oregon State University Libraries Special The proteins story was not without its drama, and Collections & Archives Research Center has readers will learn of Pauling's sometimes caustic added to its series of documentary history websites confrontations with Dorothy Wrinch, whose cyclol on the life of Linus Pauling with its newest addition, theory of protein structure was a source of intense "Linus Pauling and the Structure of Proteins: A objection for Pauling and his colleague, Carl Documentary History." Niemann. The website also delves into the fruitful collaboration enjoyed between Pauling and his The website (scarc.library.oregonstate.edu/ … Caltech co-worker, Robert Corey and explores the /proteins/index.html) is filled with rarely-seen controversy surrounding his interactions with photographs and letters and behind-the-scenes another associate, Herman Branson. tales of controversy and collaboration. Many more discoveries lie in waiting for those This is the sixth website in the Special Collections interested in the history of molecular biology: the & Archives Research Center's series focusing on invention of the ultracentrifuge by Theodor specific aspects of Pauling's remarkable life and Svedberg; Pauling's long dalliance with a theory of career. The proteins site is organized around a antibodies; his critical concept of biological narrative written by Pauling biographer Thomas specificity; and the contested notion of coiled-coils, Hager and incorporates more than 400 letters, an episode that pit Pauling against Francis Crick. manuscripts, published papers, photographs and audio-visual snippets in telling its story. Linus Pauling and the Structure of Proteins constitutes a major addition to the Pauling-related Pauling (1901-1994) remains the only individual to resources available online. -
Alpha Helical Mimics, Their Uses and Methods for Their
(19) TZZ_¥_T (11) EP 1 737 884 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C07K 7/50 (2006.01) A61K 38/12 (2006.01) 19.10.2016 Bulletin 2016/42 A61P 35/00 (2006.01) A61P 25/00 (2006.01) A61P 25/08 (2006.01) A61P 25/32 (2006.01) (21) Application number: 05714272.1 (86) International application number: (22) Date of filing: 21.03.2005 PCT/AU2005/000400 (87) International publication number: WO 2005/090388 (29.09.2005 Gazette 2005/39) (54) ALPHA HELICAL MIMICS, THEIR USES AND METHODS FOR THEIR PRODUCTION ALPHA-HELIX-MIMETIKA, DEREN ANWENDUNGEN UND VERFAHREN ZU DEREN HERSTELLUNG ALPHA-MIMETIQUES HELICOIDALES, LEURS UTILISATIONS ET LEURS PROCEDES DE PRODUCTION (84) Designated Contracting States: • CONDON ET AL: "The Bioactive Conformation of AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Human Parathyroid Hormone. Structural HU IE IS IT LI LT LU MC NL PL PT RO SE SI SK TR Evidence for the Extended Helix Postulate" J.AM.CHEM.SOC., vol. 122, 2000, pages (30) Priority: 19.03.2004 AU 2004901447 3007-3014, XP002496104 • BRACKEN CLAY ET AL: "Synthesis and nuclear (43) Date of publication of application: magnetic resonance structure determination of 03.01.2007 Bulletin 2007/01 an alpha-helical, bicyclic, lactam-bridged hexapeptide" JOURNAL OF THE AMERICAN (73) Proprietor: THE UNIVERSITY OF QUEENSLAND CHEMICAL SOCIETY, vol. 116, no. 14, 1994, St Lucia, pages 6431-6432, XP002496089 ISSN: 0002-7863 Queensland 4072 (AU) • BOUVIERM ET AL: "PROBING THE FUNCTIONAL CONFORMATION OF NEUROPEPTIDE Y (72) Inventors: THROUGH THE DESIGN AND STUDY OF CYCLIC • FAIRLIE, David, P. -
Energy of Formation of Cyclol Molecules
242 NATURE AUGUST 8, 1936 The implications of the calculation for the process dehydration will render the protein excessively liable of linkage (2) are explored in the accompanying letter to opening into chain forlllS, unless restrained by side by my colleague, F. C. Frank. chains or deprived of catalysts necessary for trans D. M. WRINCH. formation. Mildly dehydrating conditions should be Mathematical Institute, most effective because water is a catalyst for trans Oxford. formation as well as a stabilizer of one form. So long as the rings only occasionally open they can 1 D. M. Wrinch, NATURE, 137, 411 (1936). 'See, for example, J. W. Baker, "Tautomerism" (1934), p. 38. re-form in the same configuration, but as soon as ' The figures of Pauling and Sherman given in J. Chem. Phys., the opening becomes too frequent this will cease to 1, 606 (1933), calculated on the basis of the value of 208 kilogram calories for the heat of dissociation of N,, have been modified to take be the case and they will then re-form in altered account of the revised value of 169 kilogram calories (see Mulliken, structures, derived more directly from open chains. Phys. Rev., 46. 144 (1934) ; Herzberg and Sponer, Z. phys. Chem., B, 28, 1, though this modification Is without effect on these calculations. This conforms with all observations on the processes • J. Biol. Chem., 109, 325, 329 (1935). of degeneration and denaturation, including Astbury's 7 X-ray studies of these processes6 • • Thus what seems at first to be a destructive obstacle to the theory WRINCH 1 recently proposed that in monolayers may be capable not only of reconciliation with it, or globular molecules of proteins, polypeptide chains but even of enhancing its effectiveness. -
The Classification of Chemical Compounds Should Preferably Be Of
PROTEINS OF THE NERVOUS SYSTEM: CONSIDERED IN THE LIGHT OF THE PREVAILING HYPOTHESES ON PROTEIN STRUCTURE* RICHARD J. BLOCK THE CLASSIFICATION OF THE PROTEINS The classification of chemical compounds should preferably be based on definite chemical and physical properties of the individual substances. However, at the present time such treatment of most of the proteins is, impossible. Only a few groups-protamines, keratins, globins, collagens, and homologous tissue proteins-can be thus definitely classified. But, in order to have a better understand- ing of the hypotheses on the structure of the proteins, this discussion will be introduced by a brief summary of a scheme by means of which the proteins can be grouped.45 THE PROTEINS I. Simple Proteins yield on hydrolysis only amino acids or their derivatives. A. Albumins are soluble in water, coagulable by heat, and are usually deficient in glycine.t B. Globulins are insoluble in water, soluble in strong acids and alkalis, in neutral salts, and usually contain glycine.:: C. Prolamines are soluble in 70-80 per cent ethyl alcohol, yield large amounts of proline and amide nitrogen (indicative of consider- *From the Department of Chemistry, New York State Psychiatric Institute and Hospital, New York City. t Apparently the solubility of native proteins depends on the distribution of the surface charges. If the number of positive and negative groups on the surface are equal, these unite to form protein aggregates which then precipitate. The positive and negative groups in the interior of the protein globules are claimed to have no effect on the solubility, except after denaturation when some are transferred to the surface causing precipitation at the isoelectric point (cf.