On Some Significant Phytoplasma Diseases of Forest Trees
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Fraxinus Velutina (Frv) Common Name: Arizona Ash, Velvet Ash, Modesto Ash
Design Standards for Urban Infrastructure Plant Species for Urban Landscape Projects in Canberra Botanical Name: Fraxinus velutina (FRv) Common Name: Arizona ash, Velvet ash, Modesto ash Species Description • Deciduous • Ovate form with upright branching • Rough grey-brown fissured bark • Velvety buds and green pinnate leaves 10 to 25 centimetres long, turning clear yellow in autumn 10-12m • Insignificant flowers in spring • Fruit are samaras Height and width 10 to 12 metres tall by 10 metres wide Species origin South-western North America (California, Texas, Arizona and Mexico) Landscape use 10m • Available Soil Volume required: ≥45m3 • Suitable for home gardens and for use as a street tree on narrow verges • Can be used in mixed deciduous plantings in parks where a range of autumn colours are desired • Should not be planted near nature reserves, creeks or watercourses Use considerations • Occurs naturally in drier areas than Canberra, so well suited to the local climate • Moderate frost and drought tolerance • Grows best on deeper, well drained soils but may grow on poorer soils if supplementary water is provided during establishment • Requires full sun • Medium longevity, tending to decline quickly once in decline • Moderate growth rate • Very low flammability • Formative pruning is recommended to encourage a strong structure and frequent pruning may be needed once decline begins • Vigorous root system; wind-pollinated Examples in Canberra Newdegate Street, Deakin; northern end of Duffy St, Ainslie; Bates St, Dickson; Boronia Drive, O'Connor; Molesworth Street, Watson; Macgillivray Street, Yarralumla Availability Commercially available . -
Bacterial Communities of the Upper Respiratory Tract of Turkeys
www.nature.com/scientificreports OPEN Bacterial communities of the upper respiratory tract of turkeys Olimpia Kursa1*, Grzegorz Tomczyk1, Anna Sawicka‑Durkalec1, Aleksandra Giza2 & Magdalena Słomiany‑Szwarc2 The respiratory tracts of turkeys play important roles in the overall health and performance of the birds. Understanding the bacterial communities present in the respiratory tracts of turkeys can be helpful to better understand the interactions between commensal or symbiotic microorganisms and other pathogenic bacteria or viral infections. The aim of this study was the characterization of the bacterial communities of upper respiratory tracks in commercial turkeys using NGS sequencing by the amplifcation of 16S rRNA gene with primers designed for hypervariable regions V3 and V4 (MiSeq, Illumina). From 10 phyla identifed in upper respiratory tract in turkeys, the most dominated phyla were Firmicutes and Proteobacteria. Diferences in composition of bacterial diversity were found at the family and genus level. At the genus level, the turkey sequences present in respiratory tract represent 144 established bacteria. Several respiratory pathogens that contribute to the development of infections in the respiratory system of birds were identifed, including the presence of Ornithobacterium and Mycoplasma OTUs. These results obtained in this study supply information about bacterial composition and diversity of the turkey upper respiratory tract. Knowledge about bacteria present in the respiratory tract and the roles they can play in infections can be useful in controlling, diagnosing and treating commercial turkey focks. Next-generation sequencing has resulted in a marked increase in culture-independent studies characterizing the microbiome of humans and animals1–6. Much of these works have been focused on the gut microbiome of humans and other production animals 7–11. -
Global Metagenomic Survey Reveals a New Bacterial Candidate Phylum in Geothermal Springs
ARTICLE Received 13 Aug 2015 | Accepted 7 Dec 2015 | Published 27 Jan 2016 DOI: 10.1038/ncomms10476 OPEN Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs Emiley A. Eloe-Fadrosh1, David Paez-Espino1, Jessica Jarett1, Peter F. Dunfield2, Brian P. Hedlund3, Anne E. Dekas4, Stephen E. Grasby5, Allyson L. Brady6, Hailiang Dong7, Brandon R. Briggs8, Wen-Jun Li9, Danielle Goudeau1, Rex Malmstrom1, Amrita Pati1, Jennifer Pett-Ridge4, Edward M. Rubin1,10, Tanja Woyke1, Nikos C. Kyrpides1 & Natalia N. Ivanova1 Analysis of the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum (‘Candidatus Kryptonia’) found exclusively in high-temperature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic ‘blind spot’ because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery. 1 Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA. 2 Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada. -
Oystershell Scale (Lepidosaphes Ulmi) on Green Ash (Fraxinus Pennsylvanica)
Esther Buck(Senior) Oystershell Scale (Lepidosaphes ulmi) on Green Ash (Fraxinus pennsylvanica) I found a green ash tree (Fraxinus pennsylvanica) outside the law building that was covered with Oystershell Scale, (Lepidosaphes ulmi). Oystershell Scale insects on Green Ash twig Oystershell Scale insects The Green Ash normally has an upright oval growth habit growing up to 50ft tall. The Green Ash that I found was only about 20ft tall. The tree also had some twig and branch dieback. The overall health of the plant was fair, it was on the shorter side and did have some dieback but it looked like it could last for a while longer. The dwarfed growth and dieback of branches and twigs was probably a result of the high infestation of Oystershell Scale (Lepidosaphes ulmi) insect on the branches of the tree. Scale insects feeding on plant sap slowly reduce plant vigor, so I think this sample may have been shorter due to the infestation of Scale insects. As with this tree, heavily infested plants grow poorly and may suffer dieback of twigs and branches. An infested host is occasionally so weakened that it dies. The scale insects resemble a small oyster shell and are usually in clusters all over the bark of branches on trees such as dogwood, elm, hickory, ash, poplar, apple etc. The Oystershell Scale insect has two stages, a crawler stage, which settles after a few days. Then the insect develops a scale which is like an outer shell, which is usually what you will see on an infested host. The scales are white in color at first but become brown with maturity. -
Asian Long-Horned Beetle Anoplophora Glabripennis
MSU’s invasive species factsheets Asian long-horned beetle Anoplophora glabripennis The Asian long-horned beetle is an exotic wood-boring insect that attacks various broadleaf trees and shrubs. The beetle has been detected in a few urban areas of the United States. In Michigan, food host plants for this insect are abundantly present in urban landscapes, hardwood forests and riparian habitats. This beetle is a concern to lumber, nursery, landscaping and tourism industries. Michigan risk maps for exotic plant pests. Other common name starry sky beetle Systematic position Insecta > Coleoptera > Cerambycidae > Anoplophora glabripennis (Motschulsky) Global distribution Native to East Asia (China and Korea). Outside the native range, the beetle infestation has been found in Austria and Canada (Toronto) and the United States: Illinois (Chicago), New Jersey, New York (Long Island), and Asian long-horned beetle. Massachusetts. Management notes Quarantine status The only effective eradication technique available in This insect is a federally quarantined organism in North America has been to cut and completely destroy the United States (NEPDN 2006). Therefore, detection infested trees (Cavey 2000). must be reported to regulatory authorities and will lead to eradication efforts. Economic and environmental significance Plant hosts to Michigan A wide range of broadleaf trees and shrubs including If the beetle establishes in Michigan, it may lead to maple (Acer spp.), poplar (Populus spp.), willow (Salix undesirable economic consequences such as restricted spp.), mulberry (Morus spp.), plum (Prunus spp.), pear movements and exports of solid wood products via (Pyrus spp.), black locust (Robinia pseudoacacia) and elms quarantine, reduced marketability of lumber, and reduced (Ulmus spp.). -
Supporting Information
Supporting Information Lozupone et al. 10.1073/pnas.0807339105 SI Methods nococcus, and Eubacterium grouped with members of other Determining the Environmental Distribution of Sequenced Genomes. named genera with high bootstrap support (Fig. 1A). One To obtain information on the lifestyle of the isolate and its reported member of the Bacteroidetes (Bacteroides capillosus) source, we looked at descriptive information from NCBI grouped firmly within the Firmicutes. This taxonomic error was (www.ncbi.nlm.nih.gov/genomes/lproks.cgi) and other related not surprising because gut isolates have often been classified as publications. We also determined which 16S rRNA-based envi- Bacteroides based on an obligate anaerobe, Gram-negative, ronmental surveys of microbial assemblages deposited near- nonsporulating phenotype alone (6, 7). A more recent 16S identical sequences in GenBank. We first downloaded the gbenv rRNA-based analysis of the genus Clostridium defined phylo- files from the NCBI ftp site on December 31, 2007, and used genetically related clusters (4, 5), and these designations were them to create a BLAST database. These files contain GenBank supported in our phylogenetic analysis of the Clostridium species in the HGMI pipeline. We thus designated these Clostridium records for the ENV database, a component of the nonredun- species, along with the species from other named genera that dant nucleotide database (nt) where 16S rRNA environmental cluster with them in bootstrap supported nodes, as being within survey data are deposited. GenBank records for hits with Ͼ98% these clusters. sequence identity over 400 bp to the 16S rRNA sequence of each of the 67 genomes were parsed to get a list of study titles Annotation of GTs and GHs. -
MIB–MIP Is a Mycoplasma System That Captures and Cleaves Immunoglobulin G
MIB–MIP is a mycoplasma system that captures and cleaves immunoglobulin G Yonathan Arfia,b,1, Laetitia Minderc,d, Carmelo Di Primoe,f,g, Aline Le Royh,i,j, Christine Ebelh,i,j, Laurent Coquetk, Stephane Claveroll, Sanjay Vasheem, Joerg Joresn,o, Alain Blancharda,b, and Pascal Sirand-Pugneta,b aINRA (Institut National de la Recherche Agronomique), UMR 1332 Biologie du Fruit et Pathologie, F-33882 Villenave d’Ornon, France; bUniversity of Bordeaux, UMR 1332 Biologie du Fruit et Pathologie, F-33882 Villenave d’Ornon, France; cInstitut Européen de Chimie et Biologie, UMS 3033, University of Bordeaux, 33607 Pessac, France; dInstitut Bergonié, SIRIC BRIO, 33076 Bordeaux, France; eINSERM U1212, ARN Regulation Naturelle et Artificielle, 33607 Pessac, France; fCNRS UMR 5320, ARN Regulation Naturelle et Artificielle, 33607 Pessac, France; gInstitut Européen de Chimie et Biologie, University of Bordeaux, 33607 Pessac, France; hInstitut de Biologie Structurale, University of Grenoble Alpes, F-38044 Grenoble, France; iCNRS, Institut de Biologie Structurale, F-38044 Grenoble, France; jCEA, Institut de Biologie Structurale, F-38044 Grenoble, France; kCNRS UMR 6270, Plateforme PISSARO, Institute for Research and Innovation in Biomedicine - Normandie Rouen, Normandie Université, F-76821 Mont-Saint-Aignan, France; lProteome Platform, Functional Genomic Center of Bordeaux, University of Bordeaux, F-33076 Bordeaux Cedex, France; mJ. Craig Venter Institute, Rockville, MD 20850; nInternational Livestock Research Institute, 00100 Nairobi, Kenya; and oInstitute of Veterinary Bacteriology, University of Bern, CH-3001 Bern, Switzerland Edited by Roy Curtiss III, University of Florida, Gainesville, FL, and approved March 30, 2016 (received for review January 12, 2016) Mycoplasmas are “minimal” bacteria able to infect humans, wildlife, introduced into naive herds (8). -
On the Species Status of the Root-Knot Nematode Meloidogyne Ulmi Palmisano & Ambrogioni, 2000 (Nematoda: Meloidogynidae)
GHENT UNIVERSITY FACULTY OF SCIENCE DEPARTMENT OF BIOLOGY ACADEMIC YEAR 2012-2013 On the Species Status of the Root-Knot Nematode Meloidogyne ulmi Palmisano & Ambrogioni, 2000 (Nematoda: Meloidogynidae) AHMED MOHAMMED European Master of Science in Nematology (EUMAINE) PROMOTER: PROF. DR. GERRIT KARSSEN Thesis submitted in partial fulfilment of the degree of PLANT PROTECTION SERVICE European Master of Science WAGENINGEN in Nematology On the species status of the root–knot nematode Meloidogyne ulmi Palmisano and Ambrogioni, 2000 (Nematoda: Meloidogynidae) Mohammed AHMED 1, 2, * 1Ghent University, Department of Biology, Ledeganckstraat 35, 9000 Ghent, Belgium 2 Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands *Corresponding author, e–mail: [email protected] M. Ahmed Summary The root–knot nematode Meloidogyne ulmi is synonymised with Meloidogyne mali based on morphological and morphometric similarities, common hosts, as well as biochemical similarities at both protein and DNA levels. M. mali was first described in Japan on Malus prunifolia Borkh.; and M. ulmi in Italy on Ulmus chenmoui Cheng. Morphological and morphometric studies of their holo- and paratypes revealed some important similarities in certain characters as well as some general variability in some others. Host test also showed that besides the two species being able to parasitize the type hosts of the other, they share some other common hosts. Our study of the esterase and malate dehydrogenase isozyme phenotypes of some M. ulmi population gave a perfectly comparable result to that already known for M. mali. Finally, phylogenetic study of their SSU and LSU rDNA sequence data revealed that the two are not distinguishable at DNA level. -
'Candidatus Phytoplasma Solani' (Quaglino Et Al., 2013)
‘Candidatus Phytoplasma solani’ (Quaglino et al., 2013) Synonyms Phytoplasma solani Common Name(s) Disease: Bois noir, blackwood disease of grapevine, maize redness, stolbur Phytoplasma: CaPsol, maize redness phytoplasma, potato stolbur phytoplasma, stolbur phytoplasma, tomato stolbur phytoplasma Figure 1: A ‘dornfelder’ grape cultivar Type of Pest infected with ‘Candidatus Phytoplasma Phytoplasma solani’. Courtesy of Dr. Michael Maixner, Julius Kühn-Institut (JKI). Taxonomic Position Class: Mollicutes, Order: Acholeplasmatales, Family: Acholeplasmataceae Genus: ‘Candidatus Phytoplasma’ Reason for Inclusion in Manual OPIS A pest list, CAPS community suggestion, known host range and distribution have both expanded; 2016 AHP listing. Background Information Phytoplasmas, formerly known as mycoplasma-like organisms (MLOs), are pleomorphic, cell wall-less bacteria with small genomes (530 to 1350 kbp) of low G + C content (23-29%). They belong to the class Mollicutes and are the putative causal agents of yellows diseases that affect at least 1,000 plant species worldwide (McCoy et al., 1989; Seemüller et al., 2002). These minute, endocellular prokaryotes colonize the phloem of their infected plant hosts as well as various tissues and organs of their respective insect vectors. Phytoplasmas are transmitted to plants during feeding activity by their vectors, primarily leafhoppers, planthoppers, and psyllids (IRPCM, 2004; Weintraub and Beanland, 2006). Although phytoplasmas cannot be routinely grown by laboratory culture in cell free media, they may be observed in infected plant or insect tissues by use of electron microscopy or detected by molecular assays incorporating antibodies or nucleic acids. Since biological and phenotypic properties in pure culture are unavailable as aids in their identification, analysis of 16S rRNA genes has been adopted instead as the major basis for phytoplasma taxonomy. -
Pl Path 502 Phytoplasma
Phytoplasmas Pl. Path. 502 Dr. PN SHARMA Department of Plant Pathology CSK HP Agricultural University Palampur-176 062 (HP State) INDIA What are Phytoplasmas ? Phytoplasmas have diverged from gram-positive eubacteria, and belong to the Genus Phytoplasma within the Class Mollicutes. Mycoplasmas dramatically differ phenotypically from other bacteria by their minute size (0.3 - 0.5 and lack of cell wall. The lack of cell wall was used to separate mycoplasmas from other bacteria in a class named Mollicutes. Due to degenerative or reductive evolution, accompanied by significant losses of genomic sequences, the genomes of mollicutes have shrunk and are relatively small compared to other bacteria, ranging from 580 kb. to 2,200 kb. Phytoplasma •Phytoplasma are wall-less prokaryotic organisms •Seen with electron microscope in the phloem of infected plant •Unable to grow on culture media •Pleomorphic shaped and spiral Phytoplasma •Most phytoplasma transmitted from plant to plant by • leafhoppers, • but some are transmitted by Psyllids and planthoppers •Caused Yellowing, Big bud, Stuntting, Witchbroom •Sensitive to antibiotics, especially Tetracycline group Mycoplasma (Phytoplsma): Doi et al. (1970) are submicroscopic, measuring 150- 300 nm in diameter having ribosomes and DNA strands enclosed by a bilayer membrane but not the cell wall, replicate by binary fission, can be cultured artificially in vitro on specific medium and are sensitive to certain antibiotics (tetracycline not to penicillin). E.g. Little leaf of brinjal, Peach yellow Spiroplasm citri (Fudt Allh et al. 1571) Citrus stubbesh. Classification Class : Mollicutes Order: Mycoplasmatales. Three families, each with one genus: Mycoplasmataceae, genus Mycoplasma, Acholeplasmataceae, . genus Acholeplasma, Spiroplasmataceae . genus Spiroplasma. -
Emerald Ash Borer Coleoptera: Buprestidae Current Rating: None Proposed Rating: A
CALIFORNIA DEPARTMENT OF cdfa FOOD & AGR I CULT URE ~ California Pest Rating Proposal Agrilus planipennis Fairmaire: Emerald ash borer Coleoptera: Buprestidae Current Rating: None Proposed Rating: A Comment Period: 01/25/2021 – 03/11/2021 Initiating Event: On January 14, 2021, the United States Department of Agriculture removed the federal domestic quarantine for emerald ash borer, a pest that is not known to be present in California. It was determined that the resources currently being used for this quarantine would be more effective if directed towards biological control. Emerald ash borer has not been rated. Therefore, a pest rating proposal is needed. History & Status: Background: Adult emerald ash borers reach 14 mm in length and are narrow and metallic blue-green in color. The larvae are white and flattened and reach 32 mm in length (Center for Plant Health Science and Technology). Adult emerald ash borers feed on leaves (including those of ash (Fraxinus spp.) and white fringetree (Chionanthus virginicus), although this is not reported to cause significant damage (Peterson, 2019). Eggs are laid on tree branches or trunks from 2.5 to more than 90 cm diameter (McCullough, 2019). The larvae tunnel into and feed on phloem and outer sapwood. The feeding damage causes dieback and eventual death (in as little as two years) of the tree (United States Department of Agriculture, -- CALIFORNIA DEPARTMENT OF cdfa FOOD & AGRICULTURE ~ 2018). Adult emergence holes have a characteristic D-shape (Center for Plant Health Science and Technology). Development requires one to two years depending on climate; the larva is the overwintering stage in both cases (Herms and McCullough, 2014). -
'Ca. Phytoplasma Fraxini' Y
248 UNIVERSIDAD MILITAR NUEVA GRANADA ESPECIES ARBÓREAS DE LAS FAMILIAS EUPHORBIACEAE, PITTOSPORACEAE Y SALICACEAE SON INFECTADAS POR ‘CA. PHYTOPLASMA FRAXINI’ Y ‘CA. PHYTOPLASMA ASTERIS’ EN INFECCIONES MIXTAS EN BOGOTÁ, COLOMBIA Fecha de recepción: 4 de octubre de 2013 • Fecha de aceptación: 15 de noviembre de 2013 TREE SPECIES OF EUPHORBIACEAE, PITTOSPORACEAE AND SALICACEAE FAMILIES ARE INFECTED BY ‘CA. PHYTOPLASMA FRAXINI’ AND ‘CA. PHYTOPLASMA ASTERIS’ IN MIXED INFECTIONS IN BOGOTA, COLOMBIA Laura M. Perilla-Henao1 • Liliana Franco-Lara2,3 RESUMEN La presencia de fitoplasmas del grupo 16SrI (‘Ca. Phytoplasma asteris’) fue reportada en Croton spp. (Eu- phorbiaceae), Pittosporum undulatum (Pittosporaceae) y Populus nigra (Salicaceae), en Bogotá. En este traba- jo se reporta la existencia adicional de fitoplasmas del grupo 16SrVII‘Ca. Phytoplasma fraxini’ en estas mismas especies de árboles ornamentales, por técnicas moleculares como PCR anidada, RFLP y secuenciación del gen 16SrRNA. Los resultados muestran la existencia de un complejo de fitoplasmas de los grupos 16SrI y 16SrVII que se asocian con síntomas como deformación general de la corona, ramas en copo, amarillamiento, elonga- ción anormal de brotes apicales, escobas de bruja y rebrotación epicórmica que afectan el estado de sanidad de los árboles. En diciembre de 2013 la prevalencia sintomática en Croton spp., P. undulatum y P. nigra y se estimó en 36%, 93% y 85% respectivamente. Este trabajo presenta evidencia de que plantas de familias dife- rentes a Oleaceae que son susceptibles a fitoplasmas del grupo 16SrVII y que en este caso se encuentran en infecciones mixtas con fitoplasmas del grupo 16SrI. Se presentan evidencias de una enfermedad emergente de alta prevalencia en estas especies de árboles han pasado desapercibidas hasta la fecha, pero suponen un riesgo para la supervivencia de los árboles urbanos en Bogotá.