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Downloaded for Five Nuclear Genes 243 (KIAA1239, MYH6, RIPK4, RAG1, SH3PX3), and Four Mitochondrial Genes (12S, 16S, 244 COX1 and CYTB)
bioRxiv preprint doi: https://doi.org/10.1101/247304; this version posted March 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 2 How the Central American Seaway and 3 an ancient northern passage affected 4 flatfish diversification 5 6 Lisa Byrne1, François Chapleau1, and Stéphane Aris-Brosou*,1,2 7 8 1Department of Biology, University of Ottawa, Ottawa, ON, CANADA 9 2Department of Mathematics & Statistics, University of Ottawa, Ottawa, ON, CANADA 10 11 *Corresponding author: E-mail: [email protected] 12 1 bioRxiv preprint doi: https://doi.org/10.1101/247304; this version posted March 26, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 13 Abstract 14 While the natural history of flatfish has been debated for decades, the mode of 15 diversification of this biologically and economically important group has never been 16 elucidated. To address this question, we assembled the largest molecular data set to date, 17 covering > 300 species (out of ca. 800 extant), from 13 of the 14 known families over 18 nine genes, and employed relaxed molecular clocks to uncover their patterns of 19 diversification. As the fossil record of flatfish is contentious, we used sister species 20 distributed on both sides of the American continent to calibrate clock models based on 21 the closure of the Central American Seaway (CAS), and on their current species range. -
5. the Pesciara-Monte Postale Fossil-Lagerstätte: 2. Fishes and Other Vertebrates
Rendiconti della Società Paleontologica Italiana, 4, 2014, pp. 37-63 Excursion guidebook CBEP 2014-EPPC 2014-EAVP 2014-Taphos 2014 Conferences The Bolca Fossil-Lagerstätten: A window into the Eocene World (editors C.A. Papazzoni, L. Giusberti, G. Carnevale, G. Roghi, D. Bassi & R. Zorzin) 5. The Pesciara-Monte Postale Fossil-Lagerstätte: 2. Fishes and other vertebrates [ CARNEVALE, } F. BANNIKOV, [ MARRAMÀ, ^ C. TYLER & ? ZORZIN G. Carnevale, Dipartimento di Scienze della Terra, Università degli Studi di Torino, Via Valperga Caluso 35, I-10125 Torino, Italy; [email protected] A.F. Bannikov, Borisyak Paleontological Institute, Russian Academy of Sciences, Profsoyuznaya 123, Moscow 117997, Russia; [email protected] G. Marramà, Dipartimento di Scienze della Terra, Università degli Studi di Torino, Via Valperga Caluso, 35 I-10125 Torino, Italy; [email protected] J.C. Tyler, National Museum of Natural History, Smithsonian Institution (MRC-159), Washington, D.C. 20560 USA; [email protected] R. Zorzin, Sezione di Geologia e Paleontologia, Museo Civico di Storia Naturale di Verona, Lungadige Porta Vittoria 9, I-37129 Verona, Italy; [email protected] INTRODUCTION ][` ~[~ `[ =5} =!+~ [=5~5 Ceratoichthys pinnatiformis5 #] ~}==5[ ~== }}=OP[~` [ "O**""P "}[~* "+5$!+? 5`=5` ~]!5`5 =5=[~5_ O"!P#! [=~=55~5 `#~! ![[[~= O"]!#P5`` `5} 37 G. Carnevale, A.F. Bannikov, G. Marramà, J.C. Tyler & R. Zorzin FIG. 1_Ceratoichthys pinnatiformis~=5"!Q5=` 5. The Pesciara-Monte Postale Fossil-Lagerstätte: 2. Fishes and other vertebrates `== `]5"`5`" O*!P[~ `= =5<=[ ~#_5` [#5!="[ [~OQ5=5""="P5 ` [~`}= =5^^+55 ]"5++"5"5* *5 [=5` _5 [==5 *5]5[=[[5* [5=~[` +~++5~5=!5 ["5#+?5?5[=~[+" `[+=\`` 5`55`_= [~===5[=[5 ```_`5 [~5+~++5 [}5` `=5} 5= [~5O# "~++[=[+ P5`5 ~[O#P #"5[+~` [=Q5 5" QRQ5$5 ][5**~= [`OQ= RP`=5[` `+5=+5`=` +5 _O# P5+5 O? ]P _ #`[5[=~ [+#+?5` !5+`}==~ `5``= "!=Q5 "`O? ]P+5 _5`~[ =`5= G. -
Ambush Predator’ Guild – Are There Developmental Rules Underlying Body Shape Evolution in Ray-Finned Fishes? Erin E Maxwell1* and Laura AB Wilson2
Maxwell and Wilson BMC Evolutionary Biology 2013, 13:265 http://www.biomedcentral.com/1471-2148/13/265 RESEARCH ARTICLE Open Access Regionalization of the axial skeleton in the ‘ambush predator’ guild – are there developmental rules underlying body shape evolution in ray-finned fishes? Erin E Maxwell1* and Laura AB Wilson2 Abstract Background: A long, slender body plan characterized by an elongate antorbital region and posterior displacement of the unpaired fins has evolved multiple times within ray-finned fishes, and is associated with ambush predation. The axial skeleton of ray-finned fishes is divided into abdominal and caudal regions, considered to be evolutionary modules. In this study, we test whether the convergent evolution of the ambush predator body plan is associated with predictable, regional changes in the axial skeleton, specifically whether the abdominal region is preferentially lengthened relative to the caudal region through the addition of vertebrae. We test this hypothesis in seven clades showing convergent evolution of this body plan, examining abdominal and caudal vertebral counts in over 300 living and fossil species. In four of these clades, we also examined the relationship between the fineness ratio and vertebral regionalization using phylogenetic independent contrasts. Results: We report that in five of the clades surveyed, Lepisosteidae, Esocidae, Belonidae, Sphyraenidae and Fistulariidae, vertebrae are added preferentially to the abdominal region. In Lepisosteidae, Esocidae, and Belonidae, increasing abdominal vertebral count was also significantly related to increasing fineness ratio, a measure of elongation. Two clades did not preferentially add abdominal vertebrae: Saurichthyidae and Aulostomidae. Both of these groups show the development of a novel caudal region anterior to the insertion of the anal fin, morphologically differentiated from more posterior caudal vertebrae. -
MATT FRIEDMAN [email protected]
MATT FRIEDMAN [email protected] Lecturer in Palaeobiology, Deparment of Earth Sciences Tutor in Earth Sciences, St. Hugh’s College University of Oxford and Research Associate Department of Vertebrate Paleontology American Museum of Natural History EDUCATION 2003-2009 Committee on Evolutionary Ph.D., Evolutionary Biology Biology University of Chicago Chicago, Illinois 2003-2005 Committee on Evolutionary S.M., Evolutionary Biology Biology University of Chicago Chicago, Illinois 2002-2003 Department of Zoology and M.Phil., Zoology University Museum of Zoology University of Cambridge Thesis Title: “New elements of the Late Cambridge, UK Devonian lungfish Soederberghia groenlandica (Sarcopterygii: Dipnoi) 1998-2002 Department of Earth and B.S., Geological Sciences (Bio-geology) Environmental Sciences University of Rochester Rochester, NY EMPLOYMENT/INSTITUTIONAL AFFILIATIONS 2010-present Department of Paleontology Research Associate American Museum of Natural History New York, NY 2009-present Department of Earth Sciences Lecturer in Palaeobiology University of Oxford Oxford, UK 2009-present St. Hugh’s College Tutor in Earth Sciences Oxford, UK M. Friedman: curriculum vitae EMPLOYMENT/TEACHING EXPERIENCE 2012-present Department of Earth Sciences Course developer and instructor: Vertebrate University of Oxford Palaeobiology Oxford, UK 2011-present Department of Earth Sciences Course developer and instructor: Evolution University of Oxford Oxford, UK Course co-developer and instructor: Fossil Records 2010 Department of Ecology and Guest lecturer: -
The Bolca Lagerstätten: Shallow Marine Life in the Eocene
Downloaded from http://jgs.lyellcollection.org/ by guest on September 27, 2021 Review focus Journal of the Geological Society Published online May 8, 2018 https://doi.org/10.1144/jgs2017-164 | Vol. 175 | 2018 | pp. 569–579 The Bolca Lagerstätten: shallow marine life in the Eocene Matt Friedman1* & Giorgio Carnevale2 1 Museum of Paleontology and Department of Earth and Environmental Sciences, University of Michigan, 1109 Geddes Ave, Ann Arbor, MI 48109-1079, USA 2 Dipartimento di Scienze della Terra, Università degli Studi di Torino, via Valperga Caluso 35, 10125, Torino, Italy M.F., 0000-0002-0114-7384 * Correspondence: [email protected] Abstract: The Eocene limestones around the Italian village of Bolca occur in a series of distinct localities providing a unique snapshot of marine life in the early Cenozoic. Famous for its fishes, the localities of Bolca also yield diverse invertebrate faunas and a rich, but relatively understudied flora. Most fossils from Bolca derive from the Pesciara and Monte Postale sites, which bear similar fossils but are characterized by slightly different taphonomic and environmental profiles. Although not precisely contemporaneous, the age of these principal localities is well constrained to a narrow interval within the Ypresian Stage, c. 50– 49 Ma. This places Bolca at a critical time in the evolutionary assembly of modern marine fish diversity and of reef communities more generally. Received 22 December 2017; revised 7 March 2018; accepted 8 March 2018 The rich fossil sites near Bolca, Italy provide a picture of life in a contains remains of crocodiles, turtles, snakes and plants. The warm, shallow marine setting during the early Eocene, roughly lignites of Vegroni yield a variety of plants. -
The Bolca Lagerstätten: Shallow Marine Life in the Eocene
Downloaded from http://jgs.lyellcollection.org/ by guest on September 29, 2021 Review focus Journal of the Geological Society Published online May 8, 2018 https://doi.org/10.1144/jgs2017-164 | Vol. 175 | 2018 | pp. 569–579 The Bolca Lagerstätten: shallow marine life in the Eocene Matt Friedman1* & Giorgio Carnevale2 1 Museum of Paleontology and Department of Earth and Environmental Sciences, University of Michigan, 1109 Geddes Ave, Ann Arbor, MI 48109-1079, USA 2 Dipartimento di Scienze della Terra, Università degli Studi di Torino, via Valperga Caluso 35, 10125, Torino, Italy M.F., 0000-0002-0114-7384 * Correspondence: [email protected] Abstract: The Eocene limestones around the Italian village of Bolca occur in a series of distinct localities providing a unique snapshot of marine life in the early Cenozoic. Famous for its fishes, the localities of Bolca also yield diverse invertebrate faunas and a rich, but relatively understudied flora. Most fossils from Bolca derive from the Pesciara and Monte Postale sites, which bear similar fossils but are characterized by slightly different taphonomic and environmental profiles. Although not precisely contemporaneous, the age of these principal localities is well constrained to a narrow interval within the Ypresian Stage, c. 50– 49 Ma. This places Bolca at a critical time in the evolutionary assembly of modern marine fish diversity and of reef communities more generally. Received 22 December 2017; revised 7 March 2018; accepted 8 March 2018 The rich fossil sites near Bolca, Italy provide a picture of life in a contains remains of crocodiles, turtles, snakes and plants. The warm, shallow marine setting during the early Eocene, roughly lignites of Vegroni yield a variety of plants. -
The Tree of Life and a New Classification of Bony Fishes
The Tree of Life and a New Classification of Bony Fishes April 18, 2013 · Tree of Life Ricardo Betancur-R.1, Richard E. Broughton2, Edward O. Wiley3, Kent Carpenter4, J. Andrés López5, Chenhong Li 6, Nancy I. Holcroft7, Dahiana Arcila1, Millicent Sanciangco4, James C Cureton II2, Feifei Zhang2, Thaddaeus Buser, Matthew A. Campbell5, Jesus A Ballesteros1, Adela Roa-Varon8, Stuart Willis9, W. Calvin Borden10, Thaine Rowley11, Paulette C. Reneau12, Daniel J. Hough2, Guoqing Lu13, Terry Grande10, Gloria Arratia3, Guillermo Ortí1 1 The George Washington University, 2 University of Oklahoma, 3 University of Kansas, 4 Old Dominion University, 5 University of Alaska Fairbanks, 6 Shanghai Ocean University, 7 Johnson County Community College, 8 George Washington University, 9 University of Nebraska-Lincoln, 10 Loyola University Chicago, 11 University of Nebraska- Omaha, 12 Florida A&M University, 13 University of Nebraska at Omaha Betancur-R. R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton II JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G. The Tree of Life and a New Classification of Bony Fishes. PLOS Currents Tree of Life. 2013 Apr 18 [last modified: 2013 Apr 23]. Edition 1. doi: 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288. Abstract The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny that includes all major groups. The situation is most critical for a large clade of spiny-finned fishes, traditionally referred to as percomorphs, whose uncertain relationships have plagued ichthyologists for over a century. -
Mitochondrial Genomic Investigation of Flatfish Monophyly
Gene 551 (2014) 176–182 Contents lists available at ScienceDirect Gene journal homepage: www.elsevier.com/locate/gene Mitochondrial genomic investigation of flatfish monophyly Matthew A. Campbell a,1,J.AndrésLópezb,c, Takashi P. Satoh d,Wei-JenChene,⁎, Masaki Miya f a Department of Biology and Wildlife, PO Box 756100, Fairbanks, AK 99775-6100, USA b University of Alaska Museum, 907 Yukon Drive, Fairbanks, AK 99775, USA c Fisheries Division, School of Fisheries and Ocean Sciences, University of Alaska Fairbanks, 905 N. Koyukuk Drive, Fairbanks, AK 99775-7220, USA d National Museum of Nature and Science, Collection Center, 4-1-1 Amakubo, Tsukuba City, Ibaraki 305-0005, Japan e Institute of Oceanography, National Taiwan University, No. 1 Sec. 4 Roosevelt Rd., Taipei 10617, Taiwan f Natural History Museum and Institute, 955-2 Aoba-cho, Chuo-Ku, Chiba 260-8682, Japan article info abstract Article history: We present the first study to use whole mitochondrial genome sequences to examine phylogenetic affinities of Received 4 June 2014 the flatfishes (Pleuronectiformes). Flatfishes have attracted attention in evolutionary biology since the early his- Received in revised form 11 July 2014 tory of the field because understanding the evolutionary history and patterns of diversification of the group will Accepted 26 August 2014 shed light on the evolution of novel body plans. Because recent molecular studies based primarily on DNA se- Available online 27 August 2014 quences from nuclear loci have yielded conflicting results, it is important to examine phylogenetic signal in dif- ferent genomes and genome regions. We aligned and analyzed mitochondrial genome sequences from thirty- Keywords: Carangimorpharia nine pleuronectiforms including nine that are newly reported here, and sixty-six non-pleuronectiforms (twenty Pleuronectiformes additional clade L taxa [Carangimorpha or Carangimorpharia] and forty-six secondary outgroup taxa). -
11Th Flatfish Biology Conference Program & Abstracts
Northeast Fisheries Science Center Reference Document 08-19 11th Flatfish Biology Conference Program & Abstracts December 3-4, 2008 Water’s Edge Resort, Westbrook, CT by Conference Steering Committee: Renee Mercaldo-Allen (Chair), Anthony Calabrese, Donald Danila, Mark Dixon, Ambrose Jearld, Thomas Munroe, Deborah Pacileo, Chris Powell, and Sandra Sutherland November 2008 Recent Issues in This Series 08-01 46th SAW Assessment Summary Report, by the 46th Northeast Regional Stock Assessment Workshop (46th SAW). January 2008. 08-02 A brief description of the discard estimation for the National Bycatch Report, by SE Wigley, MC Palmer, J Blaylock, and PJ Rago. January 2008. 08-03 46th Northeast Regional Stock Assessment Workshop (46th SAW) (a) Assessment Report and (b) Appendixes. February 2008. 08-04 Mortality and Serious Injury Determinations for Baleen Whale Stocks Along the United States Eastern Seaboard and Adjacent Canadian Maritimes, 2002-2006, by AH Glass, TVN Cole, M Garron, RL Merrick, and RM Pace III. February 2008. 08-05 Collected Programs & Abstracts of the Northeast Fishery Science Center’s Flatfish Biology Conferences, 1986-2002, by R Mercaldo-Allen and A Calabrese, editors. February 2008. 08-06 North Atlantic Right Whale Sighting Survey (NARWSS) and Right Whale Sighting Advisory System (RWSAS) 2007 Results Summary, by M Niemeyer, TVN Cole, CL Christman, P Duley, and AH Glass. April 2008. 08-07 Northwest Atlantic Ocean Habitats Important to the Conservation of North Atlantic Right Whales (Eubalaena glacialis), by RM Pace III and RL Merrick. April 2008. 08-08 Northeast Fisheries Science Center Publications, Reports, Abstracts, and Web Documents for Calendar Year 2007, compiled by LS Garner. -
The Evolution of Extraordinary Eyes: the Cases of Flatfishes and Stalk-Eyed Flies
Evo Edu Outreach (2008) 1:487–492 DOI 10.1007/s12052-008-0089-9 ORIGINAL SCIENTIFIC ARTICLE The Evolution of Extraordinary Eyes: The Cases of Flatfishes and Stalk-eyed Flies Carl Zimmer Published online: 16 October 2008 # Springer Science + Business Media, LLC 2008 The history of life is an unbroken stream of evolution glimpses of the gradations that appear to have occurred during stretching over 3.5 billion years. In order to study it—and eye evolution, and provide a scenario for the unseen steps that in order to describe it—it must be carved into episodes. If have led to the emergence of the vertebrate eye.” They end scientists want to understand the origin, say, of bats, they their review with the emergence of the vertebrate eye. Of do not run experiments to test a hypothesis about how DNA course, Lamb et al. (2007) do not mean to imply that the first evolved on the early Earth. They do not do research on evolution of vertebrate eyes ceased after they first emerged. the transition from single-celled protozoans to the first But their focus is not on what happened afterwards. animals 600 million years ago. Likewise, they do not get Figuring out how a patch of light-sensitive receptors bogged down with bat evolution after bats first evolved— evolved into a camera-like imaging system shared by how, for example, bats spread around the world and how 40,000-odd species of vertebrates is certainly an important they coevolved with their prey. There is only so much time thing to do, and it is a job that will fill many scientists’ in the day. -
Developmental Biology 351 (2011) 200–207
Developmental Biology 351 (2011) 200–207 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/developmentalbiology Evolution of Developmental Control Mechanisms Proliferating cells in suborbital tissue drive eye migration in flatfish Baolong Bao a,⁎,1, Zhonghe Ke a,1, Jubin Xing a,1, Eric Peatman b, Zhanjiang Liu a,b, Caixia Xie a, Bing Xu a, Junwei Gai a, Xiaoling Gong a, Guimei Yang c, Yan Jiang a, Wenqiao Tang a, Daming Ren c a The Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, Shanghai 201306, PR China b The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA c The State Key Laboratory of Genetic Engineering, Institute of Genetics, Fudan University, Shanghai 200433, PR China article info abstract Article history: The left/right asymmetry of adult flatfishes (Pleuronectiformes) is remarkable given the external body Received for publication 8 September 2010 symmetry of the larval fish. The best-known change is the migration of their eyes: one eye migrates from one Revised 14 December 2010 side to the other. Two extinct primitive pleuronectiformes with incomplete orbital migration have again Accepted 18 December 2010 attracted public attention to the mechanism of eye migration, a subject of speculation and research for over a Available online 31 December 2010 century. Cranial asymmetry is currently believed to be responsible for eye migration. Contrary to that Keywords: hypothesis, we show here that the initial migration of the eye is caused by cell proliferation in the suborbital Left/right asymmetry tissue of the blind side and that the twist of frontal bone is dependent on eye migration. -
Animal Asymmetry
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Magazine R473 Cytoplasmic transport of the BBSome Primer PCM-1 Rab8GDP Animal asymmetry Rabin8 A. Richard Palmer Rab8GTP For decades morphological BBS8 BBS4 asymmetries have evoked curiosity BBIP10 Docking and fusion of vesicles and wonder (Figure 1). Although BBS1 with the base of the cilium BBS2 largely studied by natural history connoisseurs, many wonderful stories emerged: for instance, lopsided BBS7 BBS9 flatfish that lie on one side of their body and have both eyes on the BBS5 other; the narwhal’s spectacular, sinistrally- coiled and left-sided tusk; Leptin receptor Velella velella, the by-the-wind sailor that drifts on the ocean surface and Sensing of fat stores has right- and left-sailing forms; the and weight-lowering response Current Biology ability of oppositely coiled snails to mate — sometimes it’s easy and sometimes it’s not; male theridiid Figure 1. Molecular interactions of the BBSome. See text for details. spiders that rip off one palp and eat it, leaving only one for mating; male problems and defects in mucus What remains to be explored? fiddler crabs with a massive claw (up clearance that are characteristic of Nearly everything! What are the to 40% of body weight) that is used primary cilliary dyskinesia, a disorder membrane proteins that require for signaling and fighting. of motile cilia. the BBSome for their trafficking? Morphological asymmetry is Does the BBSome function only in one of those exceedingly rare Anything related to signaling? This trafficking to cilia or is it also involved characteristics of animals (and is one of the most exciting aspects of in IFT or trafficking out of cilia? protists and plants) that has evolved primary cilium biology and BBSome What is the molecular activity of the independently many times (Table 1).