Change in Fish and Benthic Communities in Belizean Patch Reefs in and Outside of a Marine Reserve, Across a Parrotfish Capture Ban
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Turbidity Criterion for the Protection of Coral Reef and Hardbottom Communities
DRAFT Implementation of the Turbidity Criterion for the Protection of Coral Reef and Hardbottom Communities Division of Environmental Assessment and Restoration Florida Department of Environmental Protection October 2020 Contents Section 1. Introduction ................................................................................................................................. 1 1.1 Purpose of Document .......................................................................................................................... 1 1.2 Background Information ..................................................................................................................... 1 1.3 Proposed Criterion and Rule Language .............................................................................................. 2 1.4 Threatened and Endangered Species Considerations .......................................................................... 5 1.5 Outstanding Florida Waters (OFW) Considerations ........................................................................... 5 1.6 Natural Factors Influencing Background Turbidity Levels ................................................................ 7 Section 2. Implementation in Permitting ..................................................................................................... 8 2.1 Permitting Information ........................................................................................................................ 8 2.2 Establishing Baseline (Pre-project) Levels ........................................................................................ -
Regional Studies in Marine Science Reef Condition and Protection Of
Regional Studies in Marine Science 32 (2019) 100893 Contents lists available at ScienceDirect Regional Studies in Marine Science journal homepage: www.elsevier.com/locate/rsma Reef condition and protection of coral diversity and evolutionary history in the marine protected areas of Southeastern Dominican Republic ∗ Camilo Cortés-Useche a,b, , Aarón Israel Muñiz-Castillo a, Johanna Calle-Triviño a,b, Roshni Yathiraj c, Jesús Ernesto Arias-González a a Centro de Investigación y de Estudios Avanzados del I.P.N., Unidad Mérida B.P. 73 CORDEMEX, C.P. 97310, Mérida, Yucatán, Mexico b Fundación Dominicana de Estudios Marinos FUNDEMAR, Bayahibe, Dominican Republic c ReefWatch Marine Conservation, Bandra West, Mumbai 400050, India article info a b s t r a c t Article history: Changes in structure and function of coral reefs are increasingly significant and few sites in the Received 18 February 2019 Caribbean can tolerate local and global stress factors. Therefore, we assessed coral reef condition Received in revised form 20 September 2019 indicators in reefs within and outside of MPAs in the southeastern Dominican Republic, considering Accepted 15 October 2019 benthic cover as well as the composition, diversity, recruitment, mortality, bleaching, the conservation Available online 18 October 2019 status and evolutionary distinctiveness of coral species. In general, we found that reef condition Keywords: indicators (coral and benthic cover, recruitment, bleaching, and mortality) within the MPAs showed Coral reefs better conditions than in the unprotected area (Boca Chica). Although the comparison between the Caribbean Boca Chica area and the MPAs may present some spatial imbalance, these zones were chosen for Biodiversity the purpose of making a comparison with a previous baseline presented. -
Federal Register/Vol. 85, No. 229/Friday, November 27, 2020/Proposed Rules
76302 Federal Register / Vol. 85, No. 229 / Friday, November 27, 2020 / Proposed Rules DEPARTMENT OF COMMERCE required fields, and enter or attach your Background comments. We listed twenty coral species as National Oceanic and Atmospheric Instructions: You must submit threatened under the ESA effective Administration comments by the above to ensure that October 10, 2014 (79 FR 53851, we receive, document, and consider September 10, 2014). Five of the corals 50 CFR Parts 223 and 226 them. Comments sent by any other occur in the Caribbean: Orbicella [Docket No. 200918–0250] method or received after the end of the annularis, O. faveolata, O. franksi, comment period, may not be Dendrogyra cylindrus, and RIN 0648–BG26 considered. All comments received are Mycetophyllia ferox. The final listing a part of the public record and will determinations were all based on the Endangered and Threatened Species; generally be posted to http:// best scientific and commercial Critical Habitat for the Threatened www.regulations.gov without change. information available on a suite of Caribbean Corals All Personal Identifying Information (for demographic, spatial, and susceptibility example, name, address, etc.) components that influence the species’ AGENCY: National Marine Fisheries vulnerability to extinction in the face of Service (NMFS), National Oceanic and voluntarily submitted by the commenter continuing threats over the foreseeable Atmospheric Administration (NOAA), may be publicly accessible. Do not future. All of the species had undergone Commerce. submit Confidential Business Information or otherwise sensitive or population declines and are susceptible ACTION: Proposed rule; request for protected information. to multiple threats, including: Ocean comments. NMFS will accept anonymous warming, diseases, ocean acidification, ecological effects of fishing, and land- SUMMARY: We, NMFS, propose to comments (enter ‘‘N/A’’ in the required based sources of pollution. -
Orbicella Annularis )
s e r i a ) d s i e l n s ) b i i r a C i s i a d l / v e u s m L n i e k n t i A i l a w l ( . a M y r Corail étoile massif I O a o r N c e W d s A s (Orbicella annularis ) i e n u d o a l L Classification s p e t Autres noms : Montastraea annularis, s p o r e Boulder star coral (EN) s Phylum Cnidaires ( Cnidaria ) G ( E Classe Anthozoaires ( Anthozoa ) sp èc Ordre Scléractiniaires ( Scleractinia ) e e m gé Famille Merulinidés ( Merulinidae ) arine proté Statut Liste Rouge UICN – mondial : en danger d’extinction I ) a dentification i d 1 e n m i Taille : colonies jusqu’à 3 m d’envergure k i n w ( Teinte : brun-doré à brun-roux ; plus rarement grise ou verte A n extrémité supérieure en forme de A Aspect : colonnes longues et épaisses à l’ O dôme ou nodule ; colonnes reliées entre elles qu’à la base ; l’ensemble forme N des monticules massifs et irréguliers n Squelette (ou corallites) : bouts protubérants de manière plus ou moins marquée ; symétrie radiale ; 2,1-2,7 mm de diamètre ; 24 septes par calice ; petites corallites en forme d’étoile, espacées de 1-1,2 mm les unes des autres ) a i Cycle de vie d 2 e m i n k Longévité : inconnue mais estimée supérieure à 10 ans voir jusqu’à 100 ans pour i w ( une colonie A A n O Maturité sexuelle inconnue mais temps de génération estimé à 10 ans N n Alimentation composés carbonés (photosynthèse des algues symbiotiques) et zooplanctonique n Reproduction : sexuée et asexuée ; hermaphrodisme ; tous les ans entre mi-août et septembre Comportement 1 - Colonie de O. -
Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
St. Kitts Final Report
ReefFix: An Integrated Coastal Zone Management (ICZM) Ecosystem Services Valuation and Capacity Building Project for the Caribbean ST. KITTS AND NEVIS FIRST DRAFT REPORT JUNE 2013 PREPARED BY PATRICK I. WILLIAMS CONSULTANT CLEVERLY HILL SANDY POINT ST. KITTS PHONE: 1 (869) 765-3988 E-MAIL: [email protected] 1 2 TABLE OF CONTENTS Page No. Table of Contents 3 List of Figures 6 List of Tables 6 Glossary of Terms 7 Acronyms 10 Executive Summary 12 Part 1: Situational analysis 15 1.1 Introduction 15 1.2 Physical attributes 16 1.2.1 Location 16 1.2.2 Area 16 1.2.3 Physical landscape 16 1.2.4 Coastal zone management 17 1.2.5 Vulnerability of coastal transportation system 19 1.2.6 Climate 19 1.3 Socio-economic context 20 1.3.1 Population 20 1.3.2 General economy 20 1.3.3 Poverty 22 1.4 Policy frameworks of relevance to marine resource protection and management in St. Kitts and Nevis 23 1.4.1 National Environmental Action Plan (NEAP) 23 1.4.2 National Physical Development Plan (2006) 23 1.4.3 National Environmental Management Strategy (NEMS) 23 1.4.4 National Biodiversity Strategy and Action Plan (NABSAP) 26 1.4.5 Medium Term Economic Strategy Paper (MTESP) 26 1.5 Legislative instruments of relevance to marine protection and management in St. Kitts and Nevis 27 1.5.1 Development Control and Planning Act (DCPA), 2000 27 1.5.2 National Conservation and Environmental Protection Act (NCEPA), 1987 27 1.5.3 Public Health Act (1969) 28 1.5.4 Solid Waste Management Corporation Act (1996) 29 1.5.5 Water Courses and Water Works Ordinance (Cap. -
Pseudosiderastrea Formosa Sp. Nov. (Cnidaria: Anthozoa: Scleractinia)
Zoological Studies 51(1): 93-98 (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan Michel Pichon1, Yao-Yang Chuang2,3, and Chaolun Allen Chen2,3,4,* 1Museum of Tropical Queensland, 70-102 Flinders Street, Townsville 4810, Australia 2Biodiversity Research Center, Academia Sinica, Nangang, Taipei 115, Taiwan 3Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 4Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan (Accepted September 1, 2011) Michel Pichon, Yao-Yang Chuang, and Chaolun Allen Chen (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a new coral species endemic to Taiwan. Zoological Studies 51(1): 93-98. Pseudosiderastrea formosa sp. nov. is a new siderastreid scleractinian coral collected in several localities in Taiwan. It lives on rocky substrates where it forms encrusting colonies. Results of morphological observations and molecular genetic analyses are presented. The new species is described and compared to P. tayamai and Siderastrea savignyana, and its morphological and phylogenic affinities are discussed. http://zoolstud.sinica.edu.tw/Journals/51.1/93.pdf Key words: Pseudosiderastrea formosa sp. nov., New species, Scleractinia, Siderastreid, Western Pacific Ocean. A siderastreid scleractinian coral was Pseudosiderastrea, described as P. formosa sp. collected from several localities around Taiwan nov. and nearby islands, where it is relatively rare. The specimens present some morphological similarities with Pseudosiderastrea tayamai Yabe MATERIAL AND METHODS and Sugiyama, 1935, the only species hitherto known from that genus, and with Siderastrea Specimens were collected by scuba diving at savignyana Milne Edwards and Haime, 1849, Wanlitung (21°59'48"N, 120°42'10"E) and the outlet which is the sole representative in the Indian of the 3rd nuclear power plant (21°55'51.38"N, Ocean of the genus Siderastrea de Blainville, 120°44'46.82"E) on the southeastern coast 1830. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Coral Species ID
Coral Species ID Colony shape (branching, mound, plates, column, crust, etc) Colony surface (bumpy, smooth, ridges) Polyp/Corallite Size (small, big) Polyp/Corallite shape (round/elliptical, irregular, y- shaped, „ innies vs outies‟ ridge/valley) Polyp color (green, brown, tan, yellow, olive, red) Different Corallite Shapes and Sizes Examples of Massive Stony Corals Montastraea Montastraea Suleimán © W.Harrigan © faveolata cavernosa S. © Diploria strigosa Porites astreoides © M. White© Montastraea faveolata MFAV Small, round polyps Form very large mounds, plates or crusts (to 4-5 m /12-15 ft) © S. ThorntonS. © Montastraea faveolata MFAV Surfaces smooth, ridged, or with bumps aligned in vertical rows © W. Harrigan © M. Weber © R. Steneck Montastraea faveolata MFAV Colonies are flattened, massive- plates with smooth surfaces under conditions of low light. Montastrea annularis MANN How similar to M. faveolata Small polyps Smooth surface How different Colonies are subdivided into numerous mounds or columns with live polyps at their summits. Plates at colony bases under low light conditions. (to 3-4 m/9-12 ft) Which is which? M. annularis M. faveolata MANN MFAV Montastrea franksi MFRA How similar to M. faveolata Small polyps and bumps Close-up How different Some polyps in bumps are larger, irregularly shaped, and may lack zooxanthellae. More aggressive spatial competitor. © P. Humann Montastrea franksi MFRA How similar to M. faveolata Form mounds, short columns, crusts, and/or plates. How different Bumps are scattered over colony surface. (to 3-4 m/9-12 ft) Montastrea franksi MFRA Flattened, massive plate morphology in low light conditions. Solenastrea bournoni SBOU How similar to M. annularis Small round polyps Mounds How different Lighter colors in life, Walls of some polyps are more distinct (“outies”) Bumpy colony surface (to ~1/2 m/<20 in) Solenastrea hyades SHYA How similar to S. -
Signature Redacted
One Fish, Two Fish, Lungfish, Youfish: Embracing Traditional Taxonomy in a Molecular World By ASSA ETTS I E OFOF TECHNOLGT E Lindsay Kirlin Brownell JUN 3 0 2014 B.S. Biology B.A. English LIBRARIES Davidson College, 2010 SUBMITTED TO THE PROGRAM IN COMPARATIVE MEDIA STUDIES/WRITING IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN SCIENCE WRITING AT THE MASSACHUSETTS INSTITUTE OF TECHNOLOGY SEPTEMBER 2014 D 2014 Lindsay Kirlin Brownell. All rights reserved. The author hereby grants to MIT permission to reproduce and to distribute publicly paper and electronic copies of this thesis document in whole or in part in any medium now known or hereafter created. Signature redacted Signature of Author: Program of Comparative Media Studies/Writing May 22, 2014 Signature redacted Certified by: Alan Lightman Professor of the Practice Thesis Advisor Signature redacted I Accepted by: _ Tom Levenson Professor of Science Writing Director, Graduate Program in Science Writing 1 One Fish, Two Fish, Lungfish, Youfish: Embracing Traditional Taxonomy in a Molecular World By Lindsay Kirlin Brownell Submitted to the Program in Comparative Media Studies/Writing on May 22, 2014 in Partial Fulfillment of the Requirements for the Degree of Master of Science in Science Writing ABSTRACT In today's increasingly digitized, data-driven world, the "old ways" of doing things, especially science, are quickly abandoned in favor of newer, ostensibly better methods. One such discipline is the ancient study of taxonomy, the discovery and organization of life on Earth. New techniques like DNA sequencing are allowing taxonomists to gain insight into the tangled web of relationships between species (among the Acanthomorph fish, for example). -
Ecology of Prognathodes Obliquus, a Butterflyfish Endemic to Mesophotic
Coral Reefs https://doi.org/10.1007/s00338-019-01822-8 NOTE Ecology of Prognathodes obliquus, a butterflyfish endemic to mesophotic ecosystems of St. Peter and St. Paul’s Archipelago 1 1 2 Lucas T. Nunes • Isadora Cord • Ronaldo B. Francini-Filho • 3 4 4 Se´rgio N. Stampar • Hudson T. Pinheiro • Luiz A. Rocha • 1 5 Sergio R. Floeter • Carlos E. L. Ferreira Received: 11 March 2019 / Revised: 17 May 2019 / Accepted: 20 May 2019 Ó Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract Chaetodontidae is among the most conspicuous consumed and used mostly as refuge. In conclusion, P. families of fishes in tropical and subtropical coral and obliquus is a generalist invertebrate feeder typical of rocky reefs. Most ecological studies focus in the genus mesophotic ecosystems of SPSPA. Chaetodon, while Prognathodes remains poorly under- stood. Here we provide the first account on the ecology of Keywords Chaetodontidae Á Diet Á Deep reefs Á Prognathodes obliquus, a butterflyfish endemic to St. Peter Microplastics Á Mid-Atlantic Ridge Á St. Paul’s Rocks and St. Paul’s Archipelago (SPSPA), Mid-Atlantic Ridge. We studied the depth distribution and foraging behaviour of P. obliquus through technical diving, remote-operated Introduction vehicles and submarines. Also, we characterized its diet by analysing stomach contents. Prognathodes obliquus is Chaetodontidae (butterflyfishes) is an iconic and diverse mostly found below 40 m, with abundance peaking fish family inhabiting tropical and subtropical reefs. It between 90 and 120 m and deepest record to date at 155 m. contains approximately 130 species (Froese and Pauly It forages mostly over sediment, epilithic algal matrix and 2019), most of them living in shallow coral ecosystems complex bottoms formed by fused polychaete tubes, (SCEs; 0–30 m depth) and about 10% in the mesophotic preying mostly upon polychaetes, crustaceans, hydroids coral ecosystems (MCEs; 30–150 m; Pratchett et al.