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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
This Article Appeared in a Journal Published by Elsevier. the Attached
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Quaternary Science Reviews 29 (2010) 3843e3860 Contents lists available at ScienceDirect Quaternary Science Reviews journal homepage: www.elsevier.com/locate/quascirev North Atlantic influence on 19the20th century rainfall in the Dead Sea watershed, teleconnections with the Sahel, and implication for Holocene climate fluctuations Yochanan Kushnir a,*, Mordechai Stein a,b a Lamont-Doherty Earth Observatory, The Earth Institute, Columbia University, 61 Route 9W, Palisades, NY 10964, USA b Geological Survey of Israel, 30 Malkhe Israel Street, 95501 Jerusalem, Israel article info abstract Article history: The importance of understanding processes that govern the hydroclimate of the Mediterranean Basin is Received 14 February 2010 highlighted by the projected significant drying of the region in response to the increase in greenhouse Received in revised form gas concentrations. Here we study the long-term hydroclimatic variability of the central Levant region, 3 August 2010 situated in the eastern boundary of the Basin, as reveled by instrumental observations and the Holocene Accepted 9 September 2010 record of Dead Sea level variations. -
CAT Vertebradosgt CDC CECON USAC 2019
Catálogo de Autoridades Taxonómicas de vertebrados de Guatemala CDC-CECON-USAC 2019 Centro de Datos para la Conservación (CDC) Centro de Estudios Conservacionistas (Cecon) Facultad de Ciencias Químicas y Farmacia Universidad de San Carlos de Guatemala Este documento fue elaborado por el Centro de Datos para la Conservación (CDC) del Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala. Guatemala, 2019 Textos y edición: Manolo J. García. Zoólogo CDC Primera edición, 2019 Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala ISBN: 978-9929-570-19-1 Cita sugerida: Centro de Estudios Conservacionistas [Cecon]. (2019). Catálogo de autoridades taxonómicas de vertebrados de Guatemala (Documento técnico). Guatemala: Centro de Datos para la Conservación [CDC], Centro de Estudios Conservacionistas [Cecon], Facultad de Ciencias Químicas y Farmacia, Universidad de San Carlos de Guatemala [Usac]. Índice 1. Presentación ............................................................................................ 4 2. Directrices generales para uso del CAT .............................................. 5 2.1 El grupo objetivo ..................................................................... 5 2.2 Categorías taxonómicas ......................................................... 5 2.3 Nombre de autoridades .......................................................... 5 2.4 Estatus taxonómico -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
West Africa Part III: Central Africa Part IV: East Africa & Southern Africa Name: Date
Part I: North Africa Part II: West Africa Part III: Central Africa Part IV: East Africa & Southern Africa Name: Date: AFRI CA Overview RICA lies at the heart of the earth's land Then, during the nineteenth century, masses. It sits astride the equator, with European traders began setting up trading sta . almost half the continent to the north tions along the coast of West Africa. The of the equator, and half to the south. It con traders, and their governments, soon saw great tains some of the world's greatest deserts, as opportunity for profit in Africa. Eventually, well as some of the world's greatest rivers. It many European countries took control of the has snow-capped mountains, and parched, arid land and divided it into colonies. plains. The first humans came from Africa. By the middle of the twentieth century, peo And in the millennia since those fust humans ple all across Africa had demanded indepen walked the plains of Africa, many different cul dence from colonial rule. By the end of the tures have arisen there. century, government had passed firmly into Physically, Africa is one enormous plateau. It African hands. However, the newly independ has no continental-scale mountain chains, no ent nations must still deal with the legacy of peninsulas, no deep fjords. Most of the conti colonialism. The boundaries the European nent is more than 1000 feet (300m) above sea powers created often cut across ethnic and cul level; over half is above 2500 feet (800 m). tural groups. Many African nations today are Africa's early history reflects the wide stretch still struggling to reconcile the different cul of the continent. -
Most Impaired" Coral Reef Areas in the State of Hawai'i
Final Report: EPA Grant CD97918401-0 P. L. Jokiel, K S. Rodgers and Eric K. Brown Page 1 Assessment, Mapping and Monitoring of Selected "Most Impaired" Coral Reef Areas in the State of Hawai'i. Paul L. Jokiel Ku'ulei Rodgers and Eric K. Brown Hawaii Coral Reef Assessment and Monitoring Program (CRAMP) Hawai‘i Institute of Marine Biology P.O.Box 1346 Kāne'ohe, HI 96744 Phone: 808 236 7440 e-mail: [email protected] Final Report: EPA Grant CD97918401-0 April 1, 2004. Final Report: EPA Grant CD97918401-0 P. L. Jokiel, K S. Rodgers and Eric K. Brown Page 2 Table of Contents 0.0 Overview of project in relation to main Hawaiian Islands ................................................3 0.1 Introduction...................................................................................................................3 0.2 Overview of coral reefs – Main Hawaiian Islands........................................................4 1.0 Ka¯ne‘ohe Bay .................................................................................................................12 1.1 South Ka¯ne‘ohe Bay Segment ...................................................................................62 1.2 Central Ka¯ne‘ohe Bay Segment..................................................................................86 1.3 North Ka¯ne‘ohe Bay Segment ....................................................................................94 2.0 South Moloka‘i ................................................................................................................96 2.1 Kamalō -
Assessing Species Diversity of Coral Triangle Artisanal Fisheries: a DNA Barcode Reference Library for the Shore Fishes Retailed at Ambon Harbor (Indonesia)
Received: 19 September 2019 | Revised: 30 January 2020 | Accepted: 3 February 2020 DOI: 10.1002/ece3.6128 ORIGINAL RESEARCH Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia) Gino Limmon1 | Erwan Delrieu-Trottin2,3 | Jesaya Patikawa1 | Frederik Rijoly1 | Hadi Dahruddin4 | Frédéric Busson2,5 | Dirk Steinke6 | Nicolas Hubert2 1Pusat Kemaritiman dan Kelautan, Universitas Pattimura (Maritime and Marine Abstract Science Center of Excellence), Ambon, The Coral Triangle (CT), a region spanning across Indonesia and Philippines, is home Indonesia to about 4,350 marine fish species and is among the world's most emblematic re- 2Institut de Recherche pour le Développement, UMR 226 ISEM (UM- gions in terms of conservation. Threatened by overfishing and oceans warming, the CNRS-IRD-EPHE), Montpellier, France CT fisheries have faced drastic declines over the last decades. Usually monitored 3Museum für Naturkunde, Leibniz-Institut für Evolutions-und Biodiversitätsforschung through a biomass-based approach, fisheries trends have rarely been characterized an der Humboldt-Universität zu Berlin, at the species level due to the high number of taxa involved and the difficulty to Berlin, Germany accurately and routinely identify individuals to the species level. Biomass, however, 4Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences is a poor proxy of species richness, and automated methods of species identifica- (LIPI), Cibinong, Indonesia tion are required to move beyond biomass-based approaches. Recent meta-analyses 5UMR 7208 BOREA (MNHN-CNRS-UPMC- have demonstrated that species richness peaks at intermediary levels of biomass. IRD-UCBN), Muséum National d’Histoire Naturelle, Paris, France Consequently, preserving biomass is not equal to preserving biodiversity. -
Angelfish Centropyge Acanthops Flameback Angel Md Centropyge
Angelfish Centropyge acanthops Flameback angel md Centropyge bicolor Bicolor angel nice md Centropyge eibli Eibli dwarf angel md Centropyge flavipectoralis Yellowfin dwarf angel md Centropyge flavissima Lemonpeel angel md Centropyge loriculus Flame angel ml Centropyge loriculus Flame angel Buy 3 ml Pomocanthus semicirculatus Koran angel juv. md Pomocanthus semicirculatus Koran angel juv. ml Anthias Pseudanthias squamipinnis Lyretail anthias Maldives md Pseudanthias squamipinnis Lyretail anthias Male - Maldives lg Batfish Platax tiera Tiera batfish lg Blenny Ecsenius bicolor Bicolor blenny md Ecsenius midas Gold midas blenny md Ecsenius midas Gold midas blenny lg Salarias fasciatus Sailfin blenny md Salarias fasciatus Sailfin blenny Buy 5 md Butterfly Chaetodon auriga Threadfin butterfly xl Chaetodon lunula Racoon butterfly md Chaetodon melannotus Black-backed butterfly lg Heniochus acuminatus Black and white heniochus md Heniochus singularis Singular heniochus ml Cardinal Pterapogon kauderni Banggai cardinal md Pterapogon kauderni Banggai cardinal Buy 5 md Catfish Plotosus anguillaris Striped catfsih sm Clown - Tank raised Amphiprion clarkii Clarkii clown Tank raised md Amphiprion frenatus Tomato clown Tank raised md Amphiprion ocellaris Ocellaris clown Tank raised sm Amphiprion ocellaris Ocellaris clown Buy 10 sm Amphiprion ocellaris Ocellaris clown true blackTank raised md Amphiprion ocellaris Ocellaris clown true blackBuy 5 md Amphiprion ocellaris Ocellaris clown true blackTank raised lg Amphiprion ocellaris Ocellaris clown black Tankice -
MARKET FISHES of INDONESIA Market Fishes
MARKET FISHES OF INDONESIA market fishes Market fishes indonesiaof of Indonesia 3 This bilingual, full-colour identification William T. White guide is the result of a joint collaborative 3 Peter R. Last project between Indonesia and Australia 3 Dharmadi and is an essential reference for fish 3 Ria Faizah scientists, fisheries officers, fishers, 3 Umi Chodrijah consumers and enthusiasts. 3 Budi Iskandar Prisantoso This is the first detailed guide to the bony 3 John J. Pogonoski fish species that are caught and marketed 3 Melody Puckridge in Indonesia. The bilingual layout contains information on identifying features, size, 3 Stephen J.M. Blaber distribution and habitat of 873 bony fish species recorded during intensive surveys of fish landing sites and markets. 155 market fishes indonesiaof jenis-jenis ikan indonesiadi 3 William T. White 3 Peter R. Last 3 Dharmadi 3 Ria Faizah 3 Umi Chodrijah 3 Budi Iskandar Prisantoso 3 John J. Pogonoski 3 Melody Puckridge 3 Stephen J.M. Blaber The Australian Centre for International Agricultural Research (ACIAR) was established in June 1982 by an Act of the Australian Parliament. ACIAR operates as part of Australia’s international development cooperation program, with a mission to achieve more productive and sustainable agricultural systems, for the benefit of developing countries and Australia. It commissions collaborative research between Australian and developing-country researchers in areas where Australia has special research competence. It also administers Australia’s contribution to the International Agricultural Research Centres. Where trade names are used, this constitutes neither endorsement of nor discrimination against any product by ACIAR. ACIAR MONOGRAPH SERIES This series contains the results of original research supported by ACIAR, or material deemed relevant to ACIAR’s research and development objectives. -
A Dissertation Entitled Evolution, Systematics
A Dissertation Entitled Evolution, systematics, and phylogeography of Ponto-Caspian gobies (Benthophilinae: Gobiidae: Teleostei) By Matthew E. Neilson Submitted as partial fulfillment of the requirements for The Doctor of Philosophy Degree in Biology (Ecology) ____________________________________ Adviser: Dr. Carol A. Stepien ____________________________________ Committee Member: Dr. Christine M. Mayer ____________________________________ Committee Member: Dr. Elliot J. Tramer ____________________________________ Committee Member: Dr. David J. Jude ____________________________________ Committee Member: Dr. Juan L. Bouzat ____________________________________ College of Graduate Studies The University of Toledo December 2009 Copyright © 2009 This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. _______________________________________________________________________ An Abstract of Evolution, systematics, and phylogeography of Ponto-Caspian gobies (Benthophilinae: Gobiidae: Teleostei) Matthew E. Neilson Submitted as partial fulfillment of the requirements for The Doctor of Philosophy Degree in Biology (Ecology) The University of Toledo December 2009 The study of biodiversity, at multiple hierarchical levels, provides insight into the evolutionary history of taxa and provides a framework for understanding patterns in ecology. This is especially poignant in invasion biology, where the prevalence of invasiveness in certain taxonomic groups could -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Policy Brief Clingendael Policy Brief
JUNE 2021 ‘A careful foot can step anywhere’ Policy Brief The UAE and China in the Horn of Africa: Implications for EU engagement Over the last decade, the UAE and China have vastly expanded their economic, political and military footprint in the Horn of Africa, and their actions now have the potential to shape developments in the region. Room for cooperation between Abu Dhabi and Beijing exists on issues such as maritime security, regional stability, and economic development. Moreover, the two countries’ interaction could lead to improvements in the Horn’s underdeveloped infrastructure by triggering a race to investment. Yet, development and stability in the region might suffer if the strategic interests of external players take precedence over local ones, or if local elites (mis)use external support for narrow domestic political calculations. The EU and its member states have high stakes in the Horn’s stability. To optimise their engagement, European policymakers should be aware of the implications of the Emirati and Chinese presence, and they should strive Jos Meester & Guido Lanfranchi MeesterJos & Guido to improve cooperation among the wide range of external players active in the Horn. Introduction Over the last decade, the Horn of Africa also significant from a security perspective, has become an increasingly contested as it allows swift naval transit across different geopolitical space.1 For observers of operational theatres (the Mediterranean, the the region, this trend may not come as Middle East, eastern Africa and the Indian a surprise. The Horn lays along one of Ocean) where several regional and global the world’s most important maritime powers are militarily engaged.