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Table S11: Genes Identified on GISTIC on the ASCAT Algorithm

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Table S11: Genes Identified on GISTIC on the ASCAT Algorithm Table S11: Genes identified on GISTIC on the ASCAT Algorithm Gene Symbol Chromosome Start End Length DPYD-AS1 chr1 97561478 97788511 227034 DPYD chr1 97543299 98386615 843317 MIR137HG chr1 98453555 98515249 61695 MIR2682 chr1 98510798 98510907 110 MIR137 chr1 98511625 98511727 103 LOC729987 chr1 98676266 98738214 61949 SNX7 chr1 99127235 99226056 98822 LPPR5 chr1 99355800 99470449 114650 LOC100129620 chr1 99469831 99614408 144578 LPPR4 chr1 99729847 99775138 45292 WASF2 chr1 27730733 27816678 85946 AHDC1 chr1 27860755 27930143 69389 FGR chr1 27938800 27961727 22928 IFI6 chr1 27992571 27998724 6154 FAM76A chr1 28052489 28089423 36935 STX12 chr1 28099693 28150963 51271 SCARNA1 chr1 28160911 28161077 167 PPP1R8 chr1 28157251 28178183 20933 THEMIS2 chr1 28199054 28213193 14140 RPA2 chr1 28218048 28241236 23189 SMPDL3B chr1 28261503 28285663 24161 XKR8 chr1 28286503 28294604 8102 EYA3 chr1 28296854 28415148 118295 PTAFR chr1 28473676 28520447 46772 DNAJC8 chr1 28526789 28559542 32754 ATPIF1 chr1 28562601 28564616 2016 SESN2 chr1 28585962 28609002 23041 MIR4791 chr3 19356339 19356423 85 KCNH8 chr3 19190016 19577135 387120 EFHB chr3 19920965 19975706 54742 RAB5A chr3 19988571 20026667 38097 PP2D1 chr3 20021452 20053765 32314 KAT2B chr3 20081523 20195896 114374 SGOL1 chr3 20202084 20227724 25641 SGOL1-AS1 chr3 20215735 20227919 12185 VENTXP7 chr3 21447217 21448177 961 ZNF385D chr3 21462489 21792816 330328 UBE2E2 chr3 23244783 23632296 387514 MIR548AC chr3 23375625 23648882 273258 UBE2E1 chr3 23847383 23933131 85749 NKIRAS1 chr3 23933571 23958537 24967 RPL15 chr3 23958294 23965187 6894 NR1D2 chr3 23986750 24022109 35360 LOC152024 chr3 24141464 24144738 3275 THRB chr3 24158644 24536313 377670 LOC644990 chr3 24535577 24541502 5926 MIR4792 chr3 24562852 24562926 75 RARB chr3 25469753 25639422 169670 MITF chr3 69788585 70017488 228904 SYNJ2 chr6 158402887 158520207 117321 SERAC1 chr6 158530535 158589312 58778 GTF2H5 chr6 158589378 158620376 30999 TULP4 chr6 158733691 158932856 199166 TMEM181 chr6 158957467 159056467 99001 DYNLT1 chr6 159057506 159065804 8299 SYTL3 chr6 159071045 159185908 114864 MIR3918 chr6 159185692 159185785 94 EZR chr6 159186772 159240456 53685 OSTCP1 chr6 159262157 159278664 16508 C6orf99 chr6 159309618 159331385 21768 RSPH3 chr6 159398265 159421198 22934 TAGAP chr6 159456026 159466184 10159 FNDC1 chr6 159590428 159693140 102713 SOD2 chr6 160100148 160114353 14206 WTAP chr6 160148029 160177352 29324 LOC100129518 chr6 160181290 160183364 2075 ACAT2 chr6 160182988 160200087 17100 SNORA20 chr6 160201281 160201413 133 TCP1 chr6 160199529 160210735 11207 SNORA29 chr6 160206625 160206765 141 MRPL18 chr6 160211491 160219461 7971 PNLDC1 chr6 160221300 160241735 20436 MAS1 chr6 160327973 160329107 1135 AIRN chr6 160424322 160428696 4375 IGF2R chr6 160390130 160527583 137454 LOC729603 chr6 160514113 160517244 3132 SLC22A1 chr6 160542862 160579750 36889 SLC22A2 chr6 160637793 160679963 42171 SLC22A3 chr6 160769404 160873611 104208 POU3F2 chr6 99282579 99286666 4088 FBXL4 chr6 99321600 99395849 74250 FAXC chr6 99720792 99797531 76740 COQ3 chr6 99817347 99842082 24736 PNISR chr6 99847840 99873207 25368 USP45 chr6 99880183 99963252 83070 TSTD3 chr6 99968869 99981059 12191 CCNC chr6 99990262 100016690 26429 PRDM13 chr6 100054649 100063454 8806 MCHR2 chr6 100367785 100442114 74330 LOC100287015 chr8 6261076 6264069 2994 MCPH1 chr8 6264112 6501140 237029 ANGPT2 chr8 6357174 6420784 63611 AGPAT5 chr8 6565877 6619021 53145 MIR4659A chr8 6602684 6602765 82 MIR4659B chr8 6602688 6602761 74 XKR5 chr8 6666040 6693166 27127 LOC100652791 chr8 6693075 6699975 6901 DEFB1 chr8 6728096 6735529 7434 SGCZ chr8 13947372 15095792 1148421 MIR383 chr8 14710946 14711019 74 TUSC3 chr8 15397595 15624158 226564 CDKN2A chr9 21967750 21994490 26741 CDKN2B chr9 22002901 22009312 6412 CDKN2B-AS1 chr9 21994789 22121093 126305 PTEN chr10 89623194 89728532 105339 RNLS chr10 90033620 90343082 309463 LIPJ chr10 90346518 90366733 20216 LIPF chr10 90424145 90438572 14428 LIPK chr10 90484300 90512513 28214 LIPN chr10 90521162 90537999 16838 LIPM chr10 90562486 90580303 17818 ANKRD22 chr10 90579658 90611732 32075 STAMBPL1 chr10 90639943 90683259 43317 ACTA2 chr10 90694830 90751147 56318 FAS-AS1 chr10 90751180 90752732 1553 FAS chr10 90750287 90775542 25256 MIR4679-2 chr10 90823091 90823168 78 MIR4679-1 chr10 90823092 90823167 76 CH25H chr10 90965693 90967071 1379 LIPA chr10 90973325 91011660 38336 IFIT2 chr10 91061705 91069033 7329 IFIT3 chr10 91087601 91100725 13125 IFIT1B chr10 91137812 91144962 7151 IFIT1 chr10 91152302 91166244 13943 IFIT5 chr10 91174324 91180759 6436 SLC16A12 chr10 91190050 91295313 105264 MYH13 chr17 10204182 10276322 72141 MYH8 chr17 10293641 10325267 31627 MYH4 chr17 10346607 10372876 26270 MYH1 chr17 10395626 10421859 26234 MYH2 chr17 10424464 10453017 28554 MYH3 chr17 10531842 10560626 28785 SCO1 chr17 10583648 10600885 17238 ADPRM chr17 10600926 10614875 13950 MAGOH2 chr17 10619259 10619899 641 TMEM220 chr17 10616638 10633646 17009 LINC00675 chr17 10698229 10707416 9188 PIRT chr17 10725791 10741418 15628 SHISA6 chr17 11144739 11467380 322642 DNAH9 chr17 11501747 11873065 371319 ZNF18 chr17 11880761 11900689 19929 MIR744 chr17 11985215 11985313 99 MAP2K4 chr17 11924134 12047051 122918 LINC00670 chr17 12453284 12540504 87221 MYOCD chr17 12569206 12670651 101446 ARHGAP44 chr17 12692828 12894960 202133 ELAC2 chr17 12894928 12921381 26454 HS3ST3A1 chr17 13399005 13505244 106240 CDRT15P1 chr17 13927814 13928915 1102 COX10-AS1 chr17 13932608 13972775 40168 COX10 chr17 13972718 14111996 139279 CDRT15 chr17 14139172 14140150 979 MGC12916 chr17 14207056 14209062 2007 HS3ST3B1 chr17 14204505 14249492 44988 MEX3C chr18 48700919 48724051 23133 LOC100287225 chr18 48918411 49088839 170429 DCC chr18 49866541 51062273 1195733 ZNF81 chrX 47696300 47781655 85356 ZNF182 chrX 47834249 47863394 29146 SPACA5 chrX 47863733 47869128 5396 SPACA5B chrX 47867169 47869126 1958 ZNF630 chrX 47917566 47931025 13460 COL4A5 chrX 107683073 107940775 257703 HS6ST2-AS1 chrX 131801669 131803915 2247 HS6ST2 chrX 131760037 132095423 335387 USP26 chrX 132159506 132162300 2795 CXorf28 chrX 3189860 3202694 12835 MXRA5 chrX 3226608 3264684 38077 NAP1L3 chrX 92925924 92928682 2759 FAM133A chrX 92929011 92967273 38263 F8 chrX 154064063 154250998 186936 Name DPYD antisense RNA 1 dihydropyrimidine dehydrogenase MIR137 host gene (non-protein coding) microRNA 2682 microRNA 137 uncharacterized LOC729987 sorting nexin 7 lipid phosphate phosphatase-related protein type 5 uncharacterized LOC100129620 lipid phosphate phosphatase-related protein type 4 WAS protein family, member 2 AT hook, DNA binding motif, containing 1 Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog interferon, alpha-inducible protein 6 family with sequence similarity 76, member A syntaxin 12 small Cajal body-specific RNA 1 protein phosphatase 1, regulatory subunit 8 thymocyte selection associated family member 2 replication protein A2, 32kDa sphingomyelin phosphodiesterase, acid-like 3B XK, Kell blood group complex subunit-related family, member 8 eyes absent homolog 3 (Drosophila) platelet-activating factor receptor DnaJ (Hsp40) homolog, subfamily C, member 8 ATPase inhibitory factor 1 sestrin 2 microRNA 4791 potassium voltage-gated channel, subfamily H (eag-related), member 8 EF-hand domain family, member B RAB5A, member RAS oncogene family protein phosphatase 2C-like domain containing 1 K(lysine) acetyltransferase 2B shugoshin-like 1 (S. pombe) SGOL1 antisense RNA 1 VENT homeobox pseudogene 7 zinc finger protein 385D ubiquitin-conjugating enzyme E2E 2 microRNA 548ac ubiquitin-conjugating enzyme E2E 1 NFKB inhibitor interacting Ras-like 1 ribosomal protein L15 nuclear receptor subfamily 1, group D, member 2 uncharacterized LOC152024 thyroid hormone receptor, beta uncharacterized LOC644990 microRNA 4792 retinoic acid receptor, beta microphthalmia-associated transcription factor synaptojanin 2 serine active site containing 1 general transcription factor IIH, polypeptide 5 tubby like protein 4 transmembrane protein 181 dynein, light chain, Tctex-type 1 synaptotagmin-like 3 microRNA 3918 ezrin oligosaccharyltransferase complex subunit pseudogene 1 chromosome 6 open reading frame 99 radial spoke 3 homolog (Chlamydomonas) T-cell activation RhoGTPase activating protein fibronectin type III domain containing 1 superoxide dismutase 2, mitochondrial Wilms tumor 1 associated protein uncharacterized LOC100129518 acetyl-CoA acetyltransferase 2 small nucleolar RNA, H/ACA box 20 t-complex 1 small nucleolar RNA, H/ACA box 29 mitochondrial ribosomal protein L18 poly(A)-specific ribonuclease (PARN)-like domain containing 1 MAS1 oncogene antisense of IGF2R non-protein coding RNA insulin-like growth factor 2 receptor calcium binding protein P22 pseudogene solute carrier family 22 (organic cation transporter), member 1 solute carrier family 22 (organic cation transporter), member 2 solute carrier family 22 (extraneuronal monoamine transporter), member 3 POU class 3 homeobox 2 F-box and leucine-rich repeat protein 4 failed axon connections homolog (Drosophila) coenzyme Q3 homolog, methyltransferase (S. cerevisiae) PNN-interacting serine/arginine-rich protein ubiquitin specific peptidase 45 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 cyclin C PR domain containing 13 melanin-concentrating hormone receptor 2 uncharacterized LOC100287015 microcephalin 1 angiopoietin 2 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) microRNA 4659a microRNA 4659b XK, Kell blood
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