Identification and Classification of Coryneform Bacteria Isolated from Bovine Mammary Glands
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Artus Mycobac. Diff. LC PCR Kit Handbook 10/2015 2
October 2015 artus® Mycobac. diff. LC PCR Kit Handbook 24 96 Version 1 Quantitative in vitro diagnostics For use with the LightCycler® 1.1/1.2/1.5 and LightCycler 2.0 instruments 4556063 (24 reactions) 4556065 (96 reactions) QIAGEN GmbH QIAGEN Strasse 1 40724 Hilden GERMANY R4 1046963EN Sample to Insight__ Contents Summary and Explanation ...................................................................................................4 Principle of the Procedure ....................................................................................................4 Materials Provided .............................................................................................................6 Kit contents ..............................................................................................................6 Materials Required but Not Provided ....................................................................................7 Warnings and Precautions ..................................................................................................8 Warnings ................................................................................................................8 Reagent Storage and Handling ............................................................................................8 Procedure ..........................................................................................................................9 Important points before starting ..................................................................................9 -
ID 2 | Issue No: 4.1 | Issue Date: 29.10.14 | Page: 1 of 24 © Crown Copyright 2014 Identification of Corynebacterium Species
UK Standards for Microbiology Investigations Identification of Corynebacterium species Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 1 of 24 © Crown copyright 2014 Identification of Corynebacterium species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 2 of 24 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Corynebacterium species Contents ACKNOWLEDGMENTS ......................................................................................................... -
An Enhanced Characterization of the Human Skin Microbiome
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.21.914820; this version posted January 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 An enhanced characterization of the human skin microbiome: a new biodiversity of 2 microbial interactions 3 4 Akintunde Emiola1, Wei Zhou1, Julia Oh1* 5 6 1The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, USA 7 *Corresponding author. [email protected] 8 9 10 ABSTRACT 11 12 The healthy human skin microbiome is shaped by skin site physiology, individual-specific factors, 13 and is largely stable over time despite significant environmental perturbation. Studies identifying 14 these characteristics used shotgun metagenomic sequencing for high resolution reconstruction 15 of the bacteria, fungi, and viruses in the community. However, these conclusions were drawn from 16 a relatively small proportion of the total sequence reads analyzable by mapping to known 17 reference genomes. ‘Reference-free’ approaches, based on de novo assembly of reads into 18 genome fragments, are also limited in their ability to capture low abundance species, small 19 genomes, and to discriminate between more similar genomes. To account for the large fraction 20 of non-human unmapped reads on the skin—referred to as microbial ‘dark matter’—we used a 21 hybrid de novo and reference-based approach to annotate a metagenomic dataset of 698 healthy 22 human skin samples. This approach reduced the overall proportion of uncharacterized reads from 23 42% to 17%. With our refined characterization, we revisited assumptions about the skin 24 microbiome, and demonstrated higher biodiversity and lower stability, particularly in dry and moist 25 skin sites. -
Multi-Residual Quantitative Analytical Method for Antibiotics in Sea Food by LC/MS/MS
PO-CON1742E Multi-residual quantitative analytical method for antibiotics in sea food by LC/MS/MS ASMS 2017 TP 198 Anant Lohar, Shailendra Rane, Ashutosh Shelar, Shailesh Damale, Rashi Kochhar, Purushottam Sutar, Deepti Bhandarkar, Ajit Datar, Pratap Rasam and Jitendra Kelkar Shimadzu Analytical (India) Pvt. Ltd., 1 A/B, Rushabh Chambers, Makwana Road, Marol, Andheri (E), Mumbai-400059, Maharashtra, India. Multi-residual quantitative analytical method for antibiotics in sea food by LC/MS/MS Introduction Antibiotics are widely used in agriculture as growth LC/MS/MS method has been developed for quantitation of enhancers, disease treatment and control in animal feeding multi-residual antibiotics (Table 1) from sea food sample operations. Concerns for increased antibiotic resistance of using LCMS-8040, a triple quadrupole mass spectrometer microorganisms have prompted research into the from Shimadzu Corporation, Japan. Simultaneous analysis environmental occurrence of these compounds. of multi-residual antibiotics often exhibit peak shape Assessment of the environmental occurrence of antibiotics distortion owing to their different chemical nature. To depends on development of sensitive and selective overcome this, autosampler pre-treatment feature was analytical methods based on new instrumental used [1]. technologies. Table 1. List of antibiotics Sr.No. Name of group Name of compound Number of compounds Flumequine, Oxolinic Acid, Ciprofloxacin, Danofloxacin, Difloxacin.HCl, 1 Fluoroquinolones 8 Enrofloxacin, Sarafloxacin HCl Trihydrate, -
AMEG Categorisation of Antibiotics
12 December 2019 EMA/CVMP/CHMP/682198/2017 Committee for Medicinal Products for Veterinary use (CVMP) Committee for Medicinal Products for Human Use (CHMP) Categorisation of antibiotics in the European Union Answer to the request from the European Commission for updating the scientific advice on the impact on public health and animal health of the use of antibiotics in animals Agreed by the Antimicrobial Advice ad hoc Expert Group (AMEG) 29 October 2018 Adopted by the CVMP for release for consultation 24 January 2019 Adopted by the CHMP for release for consultation 31 January 2019 Start of public consultation 5 February 2019 End of consultation (deadline for comments) 30 April 2019 Agreed by the Antimicrobial Advice ad hoc Expert Group (AMEG) 19 November 2019 Adopted by the CVMP 5 December 2019 Adopted by the CHMP 12 December 2019 Official address Domenico Scarlattilaan 6 ● 1083 HS Amsterdam ● The Netherlands Address for visits and deliveries Refer to www.ema.europa.eu/how-to-find-us Send us a question Go to www.ema.europa.eu/contact Telephone +31 (0)88 781 6000 An agency of the European Union © European Medicines Agency, 2020. Reproduction is authorised provided the source is acknowledged. Categorisation of antibiotics in the European Union Table of Contents 1. Summary assessment and recommendations .......................................... 3 2. Introduction ............................................................................................ 7 2.1. Background ........................................................................................................ -
Mitigation of Antimicrobial Drug Resistance and Changes in The
Mitigation of Antimicrobial Drug Resistance and Changes in the Microbiome of Feedlot Cattle Supplemented with Lactobacillus salivarius L28 as an Alternative to Sub-Therapeutic Antibiotics by Andrea R. English, M.S. A Dissertation In Animal Science Submitted to the Graduate Faculty of Texas Tech University in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Approved Dr. Marcos X. Sánchez-Plata Co-Chair of Committee Dr. Mindy M. Brashears Co-Chair of Committee Dr. Kendra K. Nightingale Dr. Alejandro Echeverry Dr. Jessie Vipham Dr. Mark F. Miller Mark Sheridan Dean of the Graduate School December, 2019 Copyright 2019, Andrea English Texas Tech University, Andrea English, December 2019 ACKNOWLEDGMENTS I would like to first thank my advisor Dr. Mindy Brashears you took a chance on me and I am forever grateful. I am so thankful that I was able to learn and grow as a scientist under your guidance. You have provided me with experiences I will always remember. Thank you for everything you have done for me while at Texas Tech. Thank you to my committee, Dr. Sanchez you have been an incredible mentor and I have truly valued absorbing as much knowledge as I possibly could from you. Dr. Nightingale thank you for investing in me and this project. You pushed me to be a better scientist which I very much appreciate. Dr. Echeverry and Dr. Vipham I cannot say thank you enough for the support you have provided me. You each have always made time for me and that is invaluable. Dr. Miller thank you for continuously providing me with opportunities to grow, learn and dabble in meat science while here at Texas Tech. -
Clinical Presentations and Antimicrobial Susceptibilities of Corynebacterium Cystitidis Associated with Renal Disease in Four Beef Cattle
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Faculty Publications and Other Works -- Large Veterinary Medicine -- Faculty Publications and Animal Clinical Sciences Other Works 8-24-2020 Clinical presentations and antimicrobial susceptibilities of Corynebacterium cystitidis associated with renal disease in four beef cattle Joseph Smith ISU, UTK, [email protected] Adam C. Krull ISU Jennifer A. Schleining ISU, TAMU Rachel J. Derscheid ISU Amanda J. Kreuder ISU, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_largpubs Part of the Bacteria Commons, Large or Food Animal and Equine Medicine Commons, and the Veterinary Microbiology and Immunobiology Commons Recommended Citation Smith, JS, Krull, AC, Schleining, JA, Derscheid, RJ, Kreuder, AJ. Clinical presentations and antimicrobial susceptibilities of Corynebacterium cystitidis associated with renal disease in four beef cattle. J Vet Intern Med. 2020; 34: 2169– 2174. https://doi.org/10.1111/jvim.15844 This Article is brought to you for free and open access by the Veterinary Medicine -- Faculty Publications and Other Works at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Faculty Publications and Other Works -- Large Animal Clinical Sciences by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Received: 22 April 2020 Accepted: 26 June 2020 DOI: 10.1111/jvim.15844 CASE REPORT Clinical presentations -
Corynebacterium Species Rarely Cause Orthopedic Infections
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2018 Corynebacterium species rarely cause orthopedic infections Kalt, Fabian ; Schulthess, Bettina ; Sidler, Fabian ; Herren, Sebastian ; Fucentese, Sandro F ; Zingg, Patrick O ; Berli, Martin ; Zinkernagel, Annelies S ; Zbinden, Reinhard ; Achermann, Yvonne Abstract: Corynebacterium spp. are rarely considered as pathogens but data in orthopedic infections are sparse. Therefore, we asked how often Corynebacterium spp. caused an infection in a defined cohort of orthopedic patients with a positive culture. In addition, we aimed to determine the species variety and susceptibility of isolated strains in regards to potential treatment strategies. Between 2006 and 2015, we retrospectively assessed all Corynebacterium sp. bone and joint cultures from an orthopedic ward. The isolates were considered as relevant indicating an infection if the same Corynebacterium sp. was present in at least two samples. We found 97 orthopedic cases with isolation of Corynebacterium spp. (128 positive samples), mainly Corynebacterium tuberculostearicum (n=26), Corynebacterium amycolatum (n=17), Corynebacterium striatum (n=13), and Corynebacterium afermentans (n=11). Compared to a cohort of positive blood cultures, we found significantly more C. striatum and C. tuberculostearicum but no C. jeikeium cases. Only 16 cases out 66 cases (24.2%) with an available diagnostic set of at least 2 samples had an infection. Antibiotic susceptibility testing (AST) of different antibiotics showed various susceptibility results except for vancomycin and linezolid with a 100% susceptibility rate. Rates of susceptibility of corynebacteria isolated from orthopedic samples and of isolates from blood cultures were comparable. In conclusion, our study results confirmed that Corynebacterium sp. -
Corynebacterium Bovis: a Rare Case of Persistent Bacterial Keratitis and Corneal Perforation
Open Access Case Report DOI: 10.7759/cureus.16913 Corynebacterium Bovis: A Rare Case of Persistent Bacterial Keratitis and Corneal Perforation Mohammed Elsheikh 1 , Ahmed Elsayed 1 , Nicholas Bennett 1 , Martin Connor 2 1. Ophthalmology, NHS Dumfries & Galloway, Dumfries, GBR 2. Microbiology, NHS Dumfries & Galloway, Dumfries, GBR Corresponding author: Mohammed Elsheikh, [email protected] Abstract We report a rare case of severe, non-contact lens-related Corynebacterium bovis corneal infection on a background of viral keratitis, resulting in corneal abscess formation with subsequent corneal perforation. An 89-year-old Caucasian lady presented with a significant epithelial defect and a dense stromal infiltrates on a background of herpes zoster keratitis, ultimately resulting in corneal perforation. Enrichment culture obtained from corneal scraping isolated the unusual organism Corynebacterium bovis. This was treated with a combination of culture-directed, targeted course of antibiotics and surgical interventions. To the best of our knowledge, this is the first reported case of profuse bacterial keratitis secondary to Corynebacterium bovis infiltration, on a background of viral keratitis, resulting in corneal abscess formation and subsequent perforation. This report highlights this rare bacterium’s characteristics including its pathogenicity in causing severe corneal disease, particularly in immunosuppressed environments such as in this case, apparent antibiotic sensitivities & resistance, and potential transmission route. Categories: Ophthalmology, Infectious Disease Keywords: corynebacterium bovis, cornea, microbial keratitis, corneal perforation, corneal infection Introduction Corynebacterium species are frequently isolated on the conjunctiva of healthy adults and are thus increasingly regarded as non-pathogenic bacteria [1,2]. Recently, however, there have been increasing reports detailing the pathogenicity of Corynebacterium species isolated on ocular surfaces, with immunosuppression representing a risk factor [3-6]. -
DNA/RNA Synthesis
DNA/RNA Synthesis RNA synthesis, which is also called DNA transcription, is a highly selective process. Transcription by RNA polymerase II extends beyond RNA synthesis, towards a more active role in mRNA maturation, surveillance and export to the cytoplasm. Single-strand breaks are repaired by DNA ligase using the complementary strand of the double helix as a template, with DNA ligase creating the final phosphodiester bond to fully repair the DNA.DNA ligases discriminate against substrates containing RNA strands or mismatched base pairs at positions near the ends of the nickedDNA. Bleomycin (BLM) exerts its genotoxicity by generating free radicals, whichattack C-4′ in the deoxyribose backbone of DNA, leading to opening of the ribose ring and strand breakage; it is an S-independentradiomimetic agent that causes double-strand breaks in DNA. First strand cDNA is synthesized using random hexamer primers and M-MuLV Reverse Transcriptase (RNase H). Second strand cDNA synthesis is subsequently performed using DNA Polymerase I and RNase H. The remaining overhangs are converted into blunt ends using exonuclease/polymerase activity. After adenylation of the 3′ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure is ligated to prepare the samples for hybridization. Cell cycle and DNA replication are the top two pathways regulated by BET bromodomain inhibition. Cycloheximide blocks the translation of mRNA to protein. www.MedChemExpress.com 1 DNA/RNA Synthesis Inhibitors, Agonists, Activators, Modulators & Chemicals (+)-TK216 (-)-TK216 Cat. No.: HY-122903B Cat. No.: HY-122903A (+)-TK216 is an enantiomer of TK216 (HY-122903). (-)-TK216 is an enantiomer of TK216 (HY-122903). TK216 is an orally active and potent E26 TK216 is an orally active and potent E26 transformation specific (ETS) inhibitor. -
Multi-Class Confirmatory Method for Analyzing Trace Levels of Tetracyline
RAPID COMMUNICATIONS IN MASS SPECTROMETRY Rapid Commun. Mass Spectrom. 2007; 21: 3487–3496 Published online in Wiley InterScience (www.interscience.wiley.com) DOI: 10.1002/rcm.3236 Multi-class confirmatory method for analyzing trace levels of tetracyline and quinolone antibiotics in pig tissues by ultra-performance liquid chromatography coupled with tandem mass spectrometry Bing Shao1,4*, Xiaofei Jia1, Yongning Wu2, Jianying Hu3, Xiaoming Tu1 and Jing Zhang1 1Beijing Center for Disease Control and Prevention, Beijing 100013, China 2Institute of Nutrition and Food Safety, China Center for Disease Control and Prevention, Beijing 100085, China 3College of Environmental Science, Peking University, Beijing 100871, China 4School of Public Health and Family Medicine, Capital Medical University, Beijing 100089, China Received 8 June 2007; Revised 26 August 2007; Accepted 27 August 2007 An ultra-performance liquid chromatography coupled with tandem mass spectrometry (UPLC/MS/ MS) method was developed to screen and confirm multi-class veterinary drug residues in pig tissues including pig kidney, liver and meat. Twenty-one drugs of two different classes including seven tetracyclines and four types of quinolones (quinoline, naphthyridine, pyridopyrimidine and cino- line) were determined simultaneously in a single run. The homogenized sample tissues were extracted with EDTA–McIlvaine buffer solution and further purified using a polymer-based Oasis TM HLB solid-phase extraction (SPE) cartridge. An ACQUITY UPLC BEH C18 column was used to separate the analytes followed by tandem mass spectrometry using an electrospray ionization source. MS data acquisition was performed in the positive ion multiple reaction monitoring mode, selecting two ion transitions for each target compound. Recovery studies were performed at different fortification levels. -
MICROBIOLOGY LEGEND CYCLE 36 ORGANISM 5 Corynebacterium
P.O. Box 131375, Bryanston, 2074 Ground Floor, Block 5 Bryanston Gate, 170 Curzon Road Bryanston, Johannesburg, South Africa 804 Flatrock, Buiten Street, Cape Town, 8001 www.thistle.co.za Tel: +27 (011) 463 3260 Fax: +27 (011) 463 3036 Fax to Email: + 27 (0) 86-557-2232 e-mail : [email protected] Please read this section first The HPCSA and the Med Tech Society have confirmed that this clinical case study, plus your routine review of your EQA reports from Thistle QA, should be documented as a “Journal Club” activity. This means that you must record those attending for CEU purposes. Thistle will not issue a certificate to cover these activities, nor send out “correct” answers to the CEU questions at the end of this case study. The Thistle QA CEU No is: MT-2014/004. Each attendee should claim THREE CEU points for completing this Quality Control Journal Club exercise, and retain a copy of the relevant Thistle QA Participation Certificate as proof of registration on a Thistle QA EQA. MICROBIOLOGY LEGEND CYCLE 36 ORGANISM 5 Corynebacterium Corynebacteria (from the Greek words koryne, meaning club, and bacterion, meaning little rod) are gram-positive, catalase-positive, aerobic or facultatively anaerobic, generally nonmotile rods. The genus contains the species Corynebacterium diphtheriae and the nondiphtherial Corynebacteria, collectively referred to as diphtheroids. Nondiphtherial Corynebacteria, originally thought to be mainly contaminants, have increasingly over the past 2 decades been recognized as pathogenic, especially in the elderly and immunocompromised hosts. They are ubiquitous in nature and commonly colonize human skin and mucous membranes.