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Identification of Differentially Expressed Genes of Primary
Cell Research (2004); 14(6):507-512 ARTICLE http://www.cell-research.com Identification of differentially expressed genes of primary spermatocyte against round spermatid isolated from human testis using the laser capture microdissection technique Gang LIANG1,4, Xiao Dong ZHANG1, Lu Jing WANG1, Yu Shen SHA2, Jian Chao ZHANG2, Shi Ying MIAO1, Shu Dong ZONG2, Lin Fang WANG1,*, S.S. KOIDE3 1National Laboratory Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Peking Union Medical College, 5 Dong Dan San Tiao, 100005 Beijing, China 2National Research Institute for Family Planning, WHO Collaboration Center for Research in Human Reproduction, Beijing, 12 Da Hui Si, 100081 Beijing, China 3Center for Biomedical Research, Population Council, 1230 York Avenue, New York, NY 10021, USA 4Chinese National Human Genome Center, Beijing, 3-707 North Yong Chang Road BDA, Beijing 100176, China ABSTRACT The method of laser capture microdissection (LCM) combined with suppressive subtractive hybridization (SSH) was developed to isolate specific germ cells from human testis sections and to identify the genes expressed during differen- tiation and development. In the present study, over 10,000 primary spermatocytes and round spermatid cells were successfully isolated by LCM. Using the cDNAs from primary spermatocytes and round spermatids, SSH cDNAs library of primary spermatocyte-specific was constructed. The average insert size of the cDNA isolated from 75 randomly picked white clones was 500 bp, ranging from 250 bp to 1.7 kb. Using the dot-blot method, a total of 421 clones were examined, resulting in the identification of 390 positive clones emitting strong signals. -
Hyaluronidase PH20 (SPAM1) Rabbit Polyclonal Antibody – TA337855
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA337855 Hyaluronidase PH20 (SPAM1) Rabbit Polyclonal Antibody Product data: Product Type: Primary Antibodies Applications: WB Recommended Dilution: WB Reactivity: Human Host: Rabbit Isotype: IgG Clonality: Polyclonal Immunogen: The immunogen for anti-SPAM1 antibody is: synthetic peptide directed towards the C- terminal region of Human SPAM1. Synthetic peptide located within the following region: CYSTLSCKEKADVKDTDAVDVCIADGVCIDAFLKPPMETEEPQIFYNASP Formulation: Liquid. Purified antibody supplied in 1x PBS buffer with 0.09% (w/v) sodium azide and 2% sucrose. Note that this product is shipped as lyophilized powder to China customers. Purification: Affinity Purified Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Predicted Protein Size: 58 kDa Gene Name: sperm adhesion molecule 1 Database Link: NP_694859 Entrez Gene 6677 Human P38567 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 3 Hyaluronidase PH20 (SPAM1) Rabbit Polyclonal Antibody – TA337855 Background: Hyaluronidase degrades hyaluronic acid, a major structural proteoglycan found in extracellular matrices and basement membranes. Six members of the hyaluronidase family are clustered into two tightly linked groups on chromosome 3p21.3 and 7q31.3. This gene was previously referred to as HYAL1 and HYA1 and has since been assigned the official symbol SPAM1; another family member on chromosome 3p21.3 has been assigned HYAL1. -
Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle
Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle Slim Ben-Jemaa, Gabriele Senczuk, Elena Ciani, Roberta Ciampolini, Gennaro Catillo, Mekki Boussaha, Fabio Pilla, Baldassare Portolano, Salvatore Mastrangelo To cite this version: Slim Ben-Jemaa, Gabriele Senczuk, Elena Ciani, Roberta Ciampolini, Gennaro Catillo, et al.. Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle. Frontiers in Genetics, Frontiers, 2021, 10.3389/fgene.2021.675569. hal-03210766 HAL Id: hal-03210766 https://hal.inrae.fr/hal-03210766 Submitted on 28 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License ORIGINAL RESEARCH published: 28 April 2021 doi: 10.3389/fgene.2021.675569 Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle Slim Ben-Jemaa 1, Gabriele Senczuk 2, Elena Ciani 3, Roberta -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
Anatomia Associada Ao Comportamento Reprodutivo De
Jimena García Rodríguez Anatomia associada ao comportamento reprodutivo de Cubozoa Anatomy associated with the reproductive behavior of Cubozoa São Paulo 2015 Jimena García Rodríguez Anatomia associada ao comportamento reprodutivo de Cubozoa Anatomy associated with the reproductive behavior of Cubozoa Dissertação apresentada ao Instituto de Biociências da Universidade de São Paulo para obtenção de Título de Mestre em Ciências, na Área de Zoologia Orientador: Prof. Dr. Antonio Carlos Marques São Paulo 2015 García Rodríguez, Jimena Anatomia associada ao comportamento reprodutivo de Cubozoa 96 páginas Dissertação (Mestrado) - Instituto de Biociências da Universidade de São Paulo. Departamento de Zoologia. 1. Cubozoa; 2. Histologia; 3. Reprodução. I. Universidade de São Paulo. Instituto de Biociências. Departamento de Zoologia. Comissão Julgadora Prof(a) Dr(a) Prof(a) Dr(a) Prof. Dr. Antonio Carlos Marques A mis padres, hermana y en especial a mi abuelita “Caminante, son tus huellas el camino y nada más; Caminante, no hay camino, se hace camino al andar. Al andar se hace el camino, y al volver la vista atrás se ve la senda que nunca se ha de volver a pisar. Caminante no hay camino sino estelas en la mar” Antonio Machado, 1912 Agradecimentos Em primeiro lugar, eu gostaria de agradecer ao meu orientador Antonio Carlos Marques, Tim, pela confiança desde o primeiro dia, pela ajuda tanto pessoal como profissional durante os dois anos de mestrado, pelas discussões de cada tema tratado e estudado e pelas orientações que tornaram possível a elaboração deste trabalho. Agradeço também o apoio institucional do Instituto de Biociências e do Centro de Biologia Marinha da Universidade de São Paulo. -
Program Nr: 1 from the 2004 ASHG Annual Meeting Mutations in A
Program Nr: 1 from the 2004 ASHG Annual Meeting Mutations in a novel member of the chromodomain gene family cause CHARGE syndrome. L.E.L.M. Vissers1, C.M.A. van Ravenswaaij1, R. Admiraal2, J.A. Hurst3, B.B.A. de Vries1, I.M. Janssen1, W.A. van der Vliet1, E.H.L.P.G. Huys1, P.J. de Jong4, B.C.J. Hamel1, E.F.P.M. Schoenmakers1, H.G. Brunner1, A. Geurts van Kessel1, J.A. Veltman1. 1) Dept Human Genetics, UMC Nijmegen, Nijmegen, Netherlands; 2) Dept Otorhinolaryngology, UMC Nijmegen, Nijmegen, Netherlands; 3) Dept Clinical Genetics, The Churchill Hospital, Oxford, United Kingdom; 4) Children's Hospital Oakland Research Institute, BACPAC Resources, Oakland, CA. CHARGE association denotes the non-random occurrence of ocular coloboma, heart defects, choanal atresia, retarded growth and development, genital hypoplasia, ear anomalies and deafness (OMIM #214800). Almost all patients with CHARGE association are sporadic and its cause was unknown. We and others hypothesized that CHARGE association is due to a genomic microdeletion or to a mutation in a gene affecting early embryonic development. In this study array- based comparative genomic hybridization (array CGH) was used to screen patients with CHARGE association for submicroscopic DNA copy number alterations. De novo overlapping microdeletions in 8q12 were identified in two patients on a genome-wide 1 Mb resolution BAC array. A 2.3 Mb region of deletion overlap was defined using a tiling resolution chromosome 8 microarray. Sequence analysis of genes residing within this critical region revealed mutations in the CHD7 gene in 10 of the 17 CHARGE patients without microdeletions, including 7 heterozygous stop-codon mutations. -
Mammalian Male Germ Cells Are Fertile Ground for Expression Profiling Of
REPRODUCTIONREVIEW Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction Gunnar Wrobel and Michael Primig Biozentrum and Swiss Institute of Bioinformatics, Klingelbergstrasse 50-70, 4056 Basel, Switzerland Correspondence should be addressed to Michael Primig; Email: [email protected] Abstract Recent large-scale transcriptional profiling experiments of mammalian spermatogenesis using rodent model systems and different types of microarrays have yielded insight into the expression program of male germ cells. These studies revealed that an astonishingly large number of loci are differentially expressed during spermatogenesis. Among them are several hundred transcripts that appear to be specific for meiotic and post-meiotic germ cells. This group includes many genes that were pre- viously implicated in spermatogenesis and/or fertility and others that are as yet poorly characterized. Profiling experiments thus reveal candidates for regulation of spermatogenesis and fertility as well as targets for innovative contraceptives that act on gene products absent in somatic tissues. In this review, consolidated high density oligonucleotide microarray data from rodent total testis and purified germ cell samples are analyzed and their impact on our understanding of the transcriptional program governing male germ cell differentiation is discussed. Reproduction (2005) 129 1–7 Introduction 2002, Sadate-Ngatchou et al. 2003) and the absence of cAMP responsive-element modulator (Crem) and deleted During mammalian male -
Sperm Proteins SOF1, TMEM95, and SPACA6 Are Required for Sperm−Oocyte Fusion in Mice
Sperm proteins SOF1, TMEM95, and SPACA6 are required for sperm−oocyte fusion in mice Taichi Nodaa,1, Yonggang Lua,1, Yoshitaka Fujiharaa,2, Seiya Ouraa,b, Takayuki Koyanoc, Sumire Kobayashia,b, Martin M. Matzukd,e,3, and Masahito Ikawaa,f,3 aResearch Institute for Microbial Diseases, Osaka University, 565-0871 Osaka, Japan; bGraduate School of Pharmaceutical Sciences, Osaka University, 565-0871 Osaka, Japan; cDivision of Molecular Genetics, Shigei Medical Research Institute, 701-0202 Okayama, Japan; dCenter for Drug Discovery, Baylor College of Medicine, Houston, TX 77030; eDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030; and fThe Institute of Medical Science, The University of Tokyo, 108-8639 Tokyo, Japan Contributed by Martin M. Matzuk, March 19, 2020 (sent for review December 27, 2019; reviewed by Matteo Avella and Andrea Pauli) Sperm−oocyte membrane fusion is one of the most important protein, JUNO (also known as IZUMO1 receptor [IZUMO1R] events for fertilization. So far, IZUMO1 and Fertilization Influenc- and folate receptor 4 [FOLR4]) as an IZUMO1 receptor on the ing Membrane Protein (FIMP) on the sperm membrane and CD9 oocyte plasma membrane. IZUMO1 and JUNO form a 1:1 and JUNO (IZUMO1R/FOLR4) on the oocyte membrane have been complex (12), and critical residues to form this interaction were identified as fusion-required proteins. However, the molecular identified by X-ray crystal structure analysis (13–15). However, mechanisms for sperm−oocyte fusion are still unclear. Here, we in vitro studies implied that IZUMO1 may be responsible for show that testis-enriched genes, sperm−oocyte fusion required 1 sperm−oocyte membrane adhesion instead of fusion (16, 17). -
TMEM95 Is a Sperm Membrane Protein Essential for Mammalian
RESEARCH ARTICLE TMEM95 is a sperm membrane protein essential for mammalian fertilization Ismael Lamas-Toranzo1†, Julieta G Hamze2†, Enrica Bianchi3, Beatriz Ferna´ ndez-Fuertes4,5, Serafı´nPe´ rez-Cerezales1, Ricardo Laguna-Barraza1, Rau´l Ferna´ ndez-Gonza´ lez1, Pat Lonergan4, Alfonso Gutie´ rrez-Ada´ n1, Gavin J Wright3, Marı´aJime´ nez-Movilla2*, Pablo Bermejo-A´ lvarez1* 1Animal Reproduction Department, INIA, Madrid, Spain; 2Department of Cell Biology and Histology, Medical School, University of Murcia, IMIB-Arrixaca, Murcia, Spain; 3Cell Surface Signalling Laboratory, Wellcome Trust Sanger Institute, Cambridge, United Kingdom; 4School of Agriculture and Food Science, University College Dublin, Dublin, Ireland; 5Department of Biology, Faculty of Sciences, Institute of Food and Agricultural Technology, University of Girona, Girona, Spain Abstract The fusion of gamete membranes during fertilization is an essential process for sexual reproduction. Despite its importance, only three proteins are known to be indispensable for sperm- egg membrane fusion: the sperm proteins IZUMO1 and SPACA6, and the egg protein JUNO. Here we demonstrate that another sperm protein, TMEM95, is necessary for sperm-egg interaction. TMEM95 ablation in mice caused complete male-specific infertility. Sperm lacking this protein were morphologically normal exhibited normal motility, and could penetrate the zona pellucida and bind to the oolemma. However, once bound to the oolemma, TMEM95-deficient sperm were unable to fuse with the egg membrane or penetrate into the ooplasm, and fertilization could only be achieved by mechanical injection of one sperm into the ooplasm, thereby bypassing membrane *For correspondence: fusion. These data demonstrate that TMEM95 is essential for mammalian fertilization. [email protected] (Mı´Je´-M); [email protected] (PB-A´ ) †These authors contributed equally to this work Introduction In sexually reproducing species, life begins with the fusion of two gametes during fertilization. -
Gene Section Mini Review
Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL AT INIST-CNRS Gene Section Mini Review SPAM1 (sperm adhesion molecule 1 (PH -20 hyaluronidase, zona pellucida binding)) Asli Sade, Sreeparna Banerjee Department of Biology, Middle East Technical University, Ankara 06531, Turkey (AS, SB) Published in Atlas Database: March 2010 Online updated version : http://AtlasGeneticsOncology.org/Genes/SPAM1ID42361ch7q31.html DOI: 10.4267/2042/44921 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2010 Atlas of Genetics and Cytogenetics in Oncology and Haematology are clustered on chromosome 3p21.3 and the other Identity three (HYAL4, SPAM1 and HYALP1) are clustered on Other names: EC 3.2.1.35, HYA1, HYAL1, HYAL3, chromosome 7q31.3. Of the three genes on HYAL5, Hyal-PH20, MGC26532, PH-20, PH20, chromosome 7q31.3, HYALP1 is an expressed SPAG15 pseudogene. The extensive homology between the six HGNC (Hugo): SPAM1 hyaluronidase genes suggests an ancient gene duplication event before the emergence of modern Location: 7q31.32 mammals. Local order: According to NCBI Map Viewer, genes flanking SPAM1 in centromere to telomere direction Description on 7q31.3 are: According to Entrez Gene, SPAM1 gene maps to locus - HYALP1 7q31.3 hyaluronoglucosaminidase NC_000007 and spans a region of 46136 bp. According pseudogene 1 to Spidey (mRNA to genomic sequence alignment - HYAL4 7q31.3 hyaluronoglucosaminidase 4 tool), SPAM1 has 7 exons, the sizes being 78, 112, - SPAM1 7q31.3 sperm adhesion molecule 1 1160, 90, 441, 99 and 404. - TMEM229A 7q31.32 transmembrane protein 229A - hCG_1651160 7q31.33 SSU72 RNA polymerase II Transcription CTD phosphatase homolog pseudogene The SPAM1 mRNA has two isoforms; transcript Note: SPAM1 is a glycosyl-phosphatidyl inositol variant 1 (NM_003117) a 2395 bp mRNA and (GPI)-anchored enzyme found in all mammalian transcript variant 2 (NM_153189) a 2009 bp mRNA. -
Binding of Sperm Protein Izumo1 and Its Egg Receptor Juno Drives Cd9
© 2014. Published by The Company of Biologists Ltd | Development (2014) 141, 3732-3739 doi:10.1242/dev.111534 RESEARCH ARTICLE Binding of sperm protein Izumo1 and its egg receptor Juno drives Cd9 accumulation in the intercellular contact area prior to fusion during mammalian fertilization Myriam Chalbi1, Virginie Barraud-Lange2, Benjamin Ravaux1, Kevin Howan1, Nicolas Rodriguez3, Pierre Soule3, Arnaud Ndzoudi2, Claude Boucheix4,5, Eric Rubinstein4,5, Jean Philippe Wolf2, Ahmed Ziyyat2, Eric Perez1, Frédéric Pincet1 and Christine Gourier1,* ABSTRACT 2006), have so far been shown to be essential. These three Little is known about the molecular mechanisms that induce gamete molecules are also present on human egg and sperm cells. Izumo1 fusion during mammalian fertilization. After initial contact, adhesion is a testis immunoglobulin superfamily type 1 (IgSF) protein, between gametes only leads to fusion in the presence of three expressed at the plasma membrane of acrosome-reacted sperm (Satouh et al., 2012), and is highly conserved in mammals (Grayson membrane proteins that are necessary, but insufficient, for fusion: Izumo1 Izumo1 on sperm, its receptor Juno on egg and Cd9 on egg. What and Civetta, 2012). Female mice deleted for the gene have happens during this adhesion phase is a crucial issue. Here, we normal fertility, but males are completely sterile despite normal mating behavior and normal sperm production (Inoue et al., 2005). demonstrate that the intercellular adhesion that Izumo1 creates with Cd9−/− Juno is conserved in mouse and human eggs. We show that, along Similar features are observed for Cd9 on egg cells. female are healthy but severely subfertile because of defective sperm-egg with Izumo1, egg Cd9 concomitantly accumulates in the adhesion in vivo area. -
Hippo and Sonic Hedgehog Signalling Pathway Modulation of Human Urothelial Tissue Homeostasis
Hippo and Sonic Hedgehog signalling pathway modulation of human urothelial tissue homeostasis Thomas Crighton PhD University of York Department of Biology November 2020 Abstract The urinary tract is lined by a barrier-forming, mitotically-quiescent urothelium, which retains the ability to regenerate following injury. Regulation of tissue homeostasis by Hippo and Sonic Hedgehog signalling has previously been implicated in various mammalian epithelia, but limited evidence exists as to their role in adult human urothelial physiology. Focussing on the Hippo pathway, the aims of this thesis were to characterise expression of said pathways in urothelium, determine what role the pathways have in regulating urothelial phenotype, and investigate whether the pathways are implicated in muscle-invasive bladder cancer (MIBC). These aims were assessed using a cell culture paradigm of Normal Human Urothelial (NHU) cells that can be manipulated in vitro to represent different differentiated phenotypes, alongside MIBC cell lines and The Cancer Genome Atlas resource. Transcriptomic analysis of NHU cells identified a significant induction of VGLL1, a poorly understood regulator of Hippo signalling, in differentiated cells. Activation of upstream transcription factors PPARγ and GATA3 and/or blockade of active EGFR/RAS/RAF/MEK/ERK signalling were identified as mechanisms which induce VGLL1 expression in NHU cells. Ectopic overexpression of VGLL1 in undifferentiated NHU cells and MIBC cell line T24 resulted in significantly reduced proliferation. Conversely, knockdown of VGLL1 in differentiated NHU cells significantly reduced barrier tightness in an unwounded state, while inhibiting regeneration and increasing cell cycle activation in scratch-wounded cultures. A signalling pathway previously observed to be inhibited by VGLL1 function, YAP/TAZ, was unaffected by VGLL1 manipulation.