Alga Ulvaria Obscura
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E3S Web of Conferences 233, 02037 (2021) https://doi.org/10.1051/e3sconf/202123302037 IAECST 2020 Comparing Complete Mitochondrion Genome of Bloom-forming Macroalgae from the Southern Yellow Sea, China Jing Xia1, Peimin He1, Jinlin Liu1,*, Wei Liu1, Yichao Tong1, Yuqing Sun1, Shuang Zhao1, Lihua Xia2, Yutao Qin2, Haofei Zhang2, and Jianheng Zhang1,* 1College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, China, 201306 2East China Sea Environmental Monitoring Center, State Oceanic Administration, Shanghai, China, 201206 Abstract. The green tide in the Southern Yellow Sea which has been erupting continuously for 14 years. Dominant species of the free-floating Ulva in the early stage of macroalgae bloom were Ulva compressa, Ulva flexuosa, Ulva prolifera, and Ulva linza along the coast of Jiangsu Province. In the present study, we carried out comparative studies on complete mitochondrion genomes of four kinds of bloom-forming green algae, and provided standard morphological characteristic pictures of these Ulva species. The maximum likelihood phylogenetic analysis showed that U. linza is the closest sister species of U. prolifera. This study will be helpful in studying the genetic diversity and identification of Ulva species. 1 Introduction gradually [19]. Thus, it was meaningful to carry out comparative studies on organelle genomes of these Green tides, which occur widely in many coastal areas, bloom-forming green algae. are caused primarily by flotation, accumulation, and excessive proliferation of green macroalgae, especially the members of the genus Ulva [1-3]. China has the high 2 The specimen and data preparation frequency outbreak of the green tide [4-10]. Especially, In our previous studies, mitochondrion genome of U. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
Marine Species Distributions: from Data to Predictive Models
Marine Species Distributions: From data to predictive models Samuel Bosch Promoter: Prof. Dr. Olivier De Clerck Thesis submitted in partial fulfilment of the requirements for the degree of Doctor (PhD) in Science – Biology Academic year 2016-2017 Members of the examination committee Prof. Dr. Olivier De Clerck - Ghent University (Promoter)* Prof. Dr. Tom Moens – Ghent University (Chairman) Prof. Dr. Elie Verleyen – Ghent University (Secretary) Prof. Dr. Frederik Leliaert – Botanic Garden Meise / Ghent University Dr. Tom Webb – University of Sheffield Dr. Lennert Tyberghein - Vlaams Instituut voor de Zee * non-voting members Financial support This thesis was funded by the ERANET INVASIVES project (EU FP7 SEAS-ERA/INVASIVES SD/ER/010) and by VLIZ as part of the Flemish contribution to the LifeWatch ESFRI. Table of contents Chapter 1 General Introduction 7 Chapter 2 Fishing for data and sorting the catch: assessing the 25 data quality, completeness and fitness for use of data in marine biogeographic databases Chapter 3 sdmpredictors: an R package for species distribution 49 modelling predictor datasets Chapter 4 In search of relevant predictors for marine species 61 distribution modelling using the MarineSPEED benchmark dataset Chapter 5 Spatio-temporal patterns of introduced seaweeds in 97 European waters, a critical review Chapter 6 A risk assessment of aquarium trade introductions of 119 seaweed in European waters Chapter 7 Modelling the past, present and future distribution of 147 invasive seaweeds in Europe Chapter 8 General discussion 179 References 193 Summary 225 Samenvatting 229 Acknowledgements 233 Chapter 1 General Introduction 8 | C h a p t e r 1 Species distribution modelling Throughout most of human history knowledge of species diversity and their respective distributions was an essential skill for survival and civilization. -
New Ulvaceae (Ulvophyceae, Chlorophyta) from Mesophotic Ecosystems Across the Hawaiian Archipelago1
J. Phycol. 52, 40–53 (2016) © 2015 Phycological Society of America DOI: 10.1111/jpy.12375 NEW ULVACEAE (ULVOPHYCEAE, CHLOROPHYTA) FROM MESOPHOTIC ECOSYSTEMS ACROSS THE HAWAIIAN ARCHIPELAGO1 Heather L. Spalding,2 Kimberly Y. Conklin, Celia M. Smith Department of Botany, University of Hawai’i at Manoa, 3190 Maile Way, Honolulu, Hawaii 96822, USA Charles J. O’Kelly Friday Harbor Laboratories, University of Washington, 620 University Road, Friday Harbor, Washington 98250, USA and Alison R. Sherwood Department of Botany, University of Hawai’i at Manoa, 3190 Maile Way, Honolulu, Hawaii 96822, USA Ulvalean algae (Chlorophyta) are most commonly Key index words: Hawai’i; ITS; mesophotic coral described from intertidal and shallow subtidal ecosystem; molecular species concept; rbcL; sea let- marine environments worldwide, but are less well tuce; tufA; Ulva; Ulvales; Umbraulva known from mesophotic environments. Their Abbreviations: BI, Bayesian inference; ITS, Internal morphological simplicity and phenotypic plasticity Transcribed Spacer; ML, maximum likelihood; rbcL, make accurate species determinations difficult, even large subunit ribulose bis-phosphate carboxylase/ at the generic level. Here, we describe the oxygenase; tufA, elongation factor tufA mesophotic Ulvales species composition from 13 locations across 2,300 km of the Hawaiian Archipelago. Twenty-eight representative Ulvales specimens from 64 to 125 m depths were collected Mesophotic coral ecosystems (MCEs) are charac- using technical diving, submersibles, and remotely terized by communities of light-dependent corals, operated vehicles. Morphological and molecular sponges, algae, and other organisms that are typi- characters suggest that mesophotic Ulvales in cally found at depths from 30 to over 150 m in trop- Hawaiian waters form unique communities ical and subtropical regions (Hinderstein et al. -
Species Determination of Ulvoid Algae Through Genotyping; What Are the Environmental Implications? Kora S
Seattle aP cific nivU ersity Digital Commons @ SPU Honors Projects University Scholars Spring June 7th, 2019 Species determination of ulvoid algae through genotyping; what are the environmental implications? Kora S. Krumm Seattle Pacific nU iversity Follow this and additional works at: https://digitalcommons.spu.edu/honorsprojects Part of the Environmental Health and Protection Commons, Environmental Monitoring Commons, Natural Resources and Conservation Commons, and the Oceanography Commons Recommended Citation Krumm, Kora S., "Species determination of ulvoid algae through genotyping; what are the environmental implications?" (2019). Honors Projects. 95. https://digitalcommons.spu.edu/honorsprojects/95 This Honors Project is brought to you for free and open access by the University Scholars at Digital Commons @ SPU. It has been accepted for inclusion in Honors Projects by an authorized administrator of Digital Commons @ SPU. SPECIES DETERMINATION OF ULVOID ALGAE THROUGH GENOTYPING: WHAT ARE THE ENVIRONMENTAL IMPLICATIONS? by KORA S KRUMM FACULTY ADVISOR, TIMOTHY A NELSON SECOND READER, ERIC S LONG A project submitted in partial fulfillment of the requirements of the University Scholars Honors Program Seattle Pacific University 2019 Approved _________________________________ Date ________________________________________ ABSTRACT Ulva is a genus of marine green algae native to many of the world’s coastlines and is especially difficult to identify via traditional methods such as dichotomous keying. This project aims to streamline taxonomic classification of Ulva species through DNA sequence analysis. Local samples of Ulva were obtained from Puget Sound, Seattle, WA, and two target genes (rbcL and its1) were amplified via PCR and sequenced for comparative analysis between samples. Ulvoids have a detrimental impact on marine ecosystems in the Pacific Northwest due to their role in eutrophication-caused algal blooms, and reliable identification can help inform conservation efforts to mitigate these effects. -
Ulva Flexuosa
Grass Kelp (Ulva flexuosa) Ecological Risk Screening Summary U.S. Fish & Wildlife Service, February 2014 Revised, March 2016, November 2017 Web Version, 12/12/2019 Photo: Sarka Martinez. Licensed under Creative Commons BY-NC 4.0. 1 Native Range and Status in the United States Native Range From Sturtevant et al. (2012): “Unknown. This species is widespread. It occurs around the world in inland and/or coastal waters of Latin America and the Caribbean, Asia, Europe, Australia, the U.S.A., Mexico, and various islands in the Pacific Ocean (Kowalski 1975, Trono 1975, Webber 1975, Riouall 1976, Sivalingam 1977, Morton 1978, Vaughan 1978, Bird and McIntosh 1979, Lobel and Ogden 1981, Kies and Dworsky 1982, Rodriguez de Rios and Lobo 1984, Grant and Prasad 1985, Guner et al. 1985, Ho 1987, Hadi et al. 1989, Khotimchenko 1993, Beach et al. 1995, Martinez- Murillo and Aladro-Lubel 1996, Magnusson 1997, Schories et al. 1997, Fernandez et al. 1998, 1 Woolcott and King 1999, Hodgson and McDermid 2000, Tabudravu et al. 2002, Matik-Skoko et al. 2004, Lourenco et al. 2006, Sahoo et al. 2006). Ulva flexuosa is considered a cosmopolitan species that has a worldwide distribution (Lougheed and Stevenson 2004).” From Mareš et al. (2011): “Most importantly, we were able to identify all studied populations from European inland waters as U. flexuosa. This result was strongly supported by both morphological and molecular approaches. We consequently could confirm previous observations exclusively based on morphology by Wærn (1952), Bliding (1963), Marvan et al. (1997), Lederer et al. (1998), Sitkowska (1999), Skácelová (2004), Messyasz and Rybak (2009), and Kaštovský et al. -
Proceedings of National Seminar on Biodiversity And
BIODIVERSITY AND CONSERVATION OF COASTAL AND MARINE ECOSYSTEMS OF INDIA (2012) --------------------------------------------------------------------------------------------------------------------------------------------------------- Patrons: 1. Hindi VidyaPracharSamiti, Ghatkopar, Mumbai 2. Bombay Natural History Society (BNHS) 3. Association of Teachers in Biological Sciences (ATBS) 4. International Union for Conservation of Nature and Natural Resources (IUCN) 5. Mangroves for the Future (MFF) Advisory Committee for the Conference 1. Dr. S. M. Karmarkar, President, ATBS and Hon. Dir., C B Patel Research Institute, Mumbai 2. Dr. Sharad Chaphekar, Prof. Emeritus, Univ. of Mumbai 3. Dr. Asad Rehmani, Director, BNHS, Mumbi 4. Dr. A. M. Bhagwat, Director, C B Patel Research Centre, Mumbai 5. Dr. Naresh Chandra, Pro-V. C., University of Mumbai 6. Dr. R. S. Hande. Director, BCUD, University of Mumbai 7. Dr. Madhuri Pejaver, Dean, Faculty of Science, University of Mumbai 8. Dr. Vinay Deshmukh, Sr. Scientist, CMFRI, Mumbai 9. Dr. Vinayak Dalvie, Chairman, BoS in Zoology, University of Mumbai 10. Dr. Sasikumar Menon, Dy. Dir., Therapeutic Drug Monitoring Centre, Mumbai 11. Dr, Sanjay Deshmukh, Head, Dept. of Life Sciences, University of Mumbai 12. Dr. S. T. Ingale, Vice-Principal, R. J. College, Ghatkopar 13. Dr. Rekha Vartak, Head, Biology Cell, HBCSE, Mumbai 14. Dr. S. S. Barve, Head, Dept. of Botany, Vaze College, Mumbai 15. Dr. Satish Bhalerao, Head, Dept. of Botany, Wilson College Organizing Committee 1. Convenor- Dr. Usha Mukundan, Principal, R. J. College 2. Co-convenor- Deepak Apte, Dy. Director, BNHS 3. Organizing Secretary- Dr. Purushottam Kale, Head, Dept. of Zoology, R. J. College 4. Treasurer- Prof. Pravin Nayak 5. Members- Dr. S. T. Ingale Dr. Himanshu Dawda Dr. Mrinalini Date Dr. -
Sea Lettuce Systematics: Lumping Or Splitting?
bioRxiv preprint doi: https://doi.org/10.1101/413450; this version posted September 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Sea lettuce systematics: lumping or splitting? Manuela Bernardes Batista1‡, Regina L. Cunha 2‡, Rita Castilho2 and Paulo Antunes Horta3* 1Postgraduate Program in Ecology, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-900, Brazil 2Centre of Marine Sciences, CCMAR, Universidade do Algarve, Faro, Portugal. 3Phycology Laboratory, Department of Botany, Federal University of Santa Catarina, Florianópolis, SC 88040-900, Brazil ‡ These authors contributed equally to the work *Corresponding author: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/413450; this version posted September 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Abstract 2 Phylogenetic relationships within sea lettuce species belonging to the genus Ulva is a 3 daunting challenge given the scarcity of diagnostic morphological features and the pervasive 4 phenotypic plasticity. With more than 100 species described on a morphological basis, an 5 accurate evaluation of its diversity is still missing. Here we analysed 277 chloroplast-encoded 6 gene sequences (43 from this study), representing 35 nominal species of Ulva from the 7 Pacific, Indian Ocean, and Atlantic (with a particular emphasis on the Brazilian coast) in an 8 attempt to solve the complex phylogenetic relationships within this widespread genus. -
Ulvales, Chlorophyta) Con Factores Ambientales En Punta Maqueda (Golfo San Jorge, Argentina)
Revista de Biología Marina y Oceanografía 41(1): 21 – 33, julio de 2006 Relación de Blidingia minima (Ulvales, Chlorophyta) con factores ambientales en Punta Maqueda (golfo San Jorge, Argentina) Relation between Blidingia minima (Ulvales, Chlorophyta) and environmental factors at Punta Maqueda (San Jorge Gulf, Argentina) 1 1,2 Susana G. Perales y Alicia L. Boraso 1Universidad Nacional de la Patagonia San Juan Bosco. Ciudad Universitaria Km 4, (9000) Comodoro Rivadavia, Provincia del Chubut. Argentina, 2, CONICET 2Barrio Diadema, calle Río Negro 160, (9909) Comodoro Rivadavia, Chubut, Argentina [email protected] Resumen.- Los factores ambientales relacionados Abstract.- Environmental factors affecting Blidingia con Blidingia minima (Nägeli ex Kützing) Kylin se minima (Nägeli ex Kützing) Kylin were studied at estudiaron en Punta Maqueda (golfo San Jorge, Punta Maqueda (San Jorge Gulf, Argentina). Detrended Argentina) utilizando análisis de correspondencias, correspondence analysis, redundancy analysis, log- modelos log-lineales para tablas trifactoriales, análisis linear models for trifactorial tables and ANOVA were de redundancia y ANOVA. El grosor del talo está used. Wall thickness is inversely related to temperature, inversamente relacionado con irradiación, temperatura y irradiation and winds. Relative abundance is directly vientos; la abundancia está directamente relacionada related to high temperature and irradiation; branches con alta temperatura e irradiación; el tamaño celular, la and cell size relate directly to low surge exposure and ramificación y el ancho de los talos se relacionan high temperature. Longer thalli were found at lower directamente con agitación del agua y altas coastal levels. Highest biomass was observed in spring; temperaturas. Los talos más largos se encontraron en bigger thalli were collected during summer; in autumn a niveles intermareales bajos. -
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MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Gut weed (Ulva intestinalis) MarLIN – Marine Life Information Network Biology and Sensitivity Key Information Review Georgina Budd & Paolo Pizzola 2008-05-22 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/species/detail/1469]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Budd, G.C. & Pizzola, P. 2008. Ulva intestinalis Gut weed. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinsp.1469.2 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2008-05-22 Gut weed (Ulva intestinalis) - Marine Life Information Network See online review for distribution map Ulva intestinalis at Bovisand, Devon. -
Division: Chlorophyta (Green Algae) II. Algal Taxonomy
Division: Chlorophyta (green algae) I. General Characteristics II. Distinguishing Classes III. Morphology IV. Classes in Detail ~ 16,000 species ~ 90% freshwater 1 II. Algal taxonomy Hierarchical system of classification: Level: suffix: example: Domain Eukaryote Group Plantae Division -phyta Chlorophyta Class -phyceae Ulvophyceae Order -ales Ulvales Family -aceae Ulvaceae Genus Ulva species fenestrata 2 1 DOMAIN Groups (Kingdom) 1.Bacteria- cyanobacteria (blue green algae) 2.Archae “Algae” 3.Eukaryotes 1. Alveolates- dinoflagellates 2. Stramenopiles- diatoms, heterokonyophyta 3. Rhizaria- unicellular amoeboids 4. Excavates- unicellular flagellates 5. Plantae- rhodophyta, chlorophyta, seagrasses 6. Amoebozoans- slimemolds 7. Fungi- heterotrophs with extracellular digestion 8. Choanoflagellates- unicellular 3 9. Animals- multicellular heterotrophs Glaucophytes Plantae Rhodophyta Chlorophytes Chl b, Charophytes starch Land Plants 4 Adapted from Sadava 2014 2 Phylogenetics of Chlorophyta (morphological, molecular data) 5 classes: Chlorophyceae Chlorophyta Trebouxiophyceae Chl b, starch Ulvophyceae Prasinophyceae Encasement of egg Charophytes Charophyceae Embryo, cuticle Land plants 5 I. General Green Characteristics: 1) Pigments: ? 2) Chloroplast structure?: 3) Storage product? 4) Flagella? 6 3 Classes: Chlorophyceae = freshwater Trebouxiophyceae = freshwater, soil and marine Ulvophyceae = marine macroalgae Prasinophyceae = primarily marine flagellates, some freshwater; modern representatives of earliest green algae Charophyceae = freshwater; -
Ulvales, Ulvophyceae) in Mikawa Bay, Japan, Deduced from ITS2 Rdna Region Sequences
Algae Volume 22(3): 221-228, 2007 Species Diversity and Seasonal Changes of Dominant Ulva Species (Ulvales, Ulvophyceae) in Mikawa Bay, Japan, Deduced from ITS2 rDNA Region Sequences Hiroshi Kawai1*, Satoshi Shimada2, Takeaki Hanyuda1, Teruaki Suzuki3 and Gamagori City Office4 1Kobe University Research Center for Inland Seas, Rokkodai, Nadaku, Kobe 657-8501, Japan 2Creative Research Initiative ‘Sousei’, Hokkaido University, Sapporo, 060-0810 Japan 3Aichi Fisheries Research Institute, Gamagori 443-0021, Japan 4Asahimachi, Gamagori 443-8601, Japan Frequent occurrences of green tides caused by Ulva species (Ulvales, Ulvophyceae) associated with eutrophication along enclosed coasts are currently causing environmental problems in coastal ecosystems. In addition, increasing intercontinental introductions of coastal marine organisms, including Ulva, are also a serious issue. However, due to the considerable morphological plasticity of this genus, the taxonomy of Ulva species based on morphological stud- ies is problematic. Therefore, in order to elucidate the species diversity and seasonal changes of the dominant Ulva species in Mikawa Bay, central Honshu, Japan, we made seasonal collections of Ulva species at seven localities, and identified the dominant species using the ITS2 rDNA region sequences. We identified the following nine taxa as common Ulva species in the area: 1) Ulva pertusa Kjellman; 2) U. ohnoi Hiraoka et Shimada; 3) U. linza L.; 4) U. califor- nica Wille; 5) U. flexuosa Wulfen; 6) U. fasciata Delile; 7) U. compressa L.; 8) U. armoricana Dion et al.; 9) U. scandinavica Bliding. Among the species, U. pertusa was most common and dominant from spring to summer, and U. ohnoi from autumn to winter. Ulva californica and U.