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Families Hit by the Present Dali Search

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Families Hit by the Present Dali Search Table S1: All Families hit by the present Dali search 14-3-3 protein ALDH-like 1-deoxy-D-xylulose-5-phosphate reductoisomerase, Allosteric chorismate mutase C-terminal domain alpha-Amylases, C-terminal beta-sheet domain 2Fe-2S ferredoxin domains from multidomain proteins alpha-catenin/vinculin 3-Methyladenine DNA glycosylase III (MagIII) alpha-D-glucuronidasE-Hyaluronidase catalytic domain 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) alpha-D-glucuronidase, N-terminal domain 5' nucleotidase-like Alpha-hemoglobin stabilizing protein AHSP 5' to 3' exonuclease catalytic domain alpha-Subunit of urease 5' to 3' exonuclease, C-terminal subdomain alpha-subunit of urease, catalytic domain 6-phosphogluconate dE-Hydrogenase-like, N-terminal Amidase signature (AS) enzymes domain A middle domain of Talin 1 ABC transporter ATPase domain-like Aminoacid dE-Hydrogenase-like, C-terminal domain Aconitase B, N-terminal domain Aminoacid dE-Hydrogenases Aconitase iron-sulfur domain Aminoglycoside phosphotransferases Actin/HSP70 AmyC C-terminal domain-like Acyl-CoA binding protein AmyC N-terminal domain-like acyl-CoA oxidase C-terminal domains Amylase, catalytic domain acyl-CoA oxidase N-terminal domains Animal lipoxigenases Adapter protein APS, dimerisation domain Anticodon-binding domain of a subclass of class I Adenylation domain of NAD+-dependent DNA ligase aminoacyl-tRNA synthetases Adenylyl and guanylyl cyclase catalytic domain Antioxidant defense protein AhpD Adenylylcyclase toxin (the edema factor) Anti-sigma factor AsiA a domain/subunit of cytochrome bc1 complex Apolipophorin-III (Ubiquinol-cytochrome c reductase) Apolipoprotein Aerobic respiration control sensor protein, ArcB Aquaporin-like AF0060-like Archaeal DNA-binding protein AF0941-like Arfaptin, Rac-binding fragment AF1104-like Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' AgoG-like domain Alcohol dE-Hydrogenase-like, C-terminal domain Aristolochene/pentalenene synthase Alcohol dE-Hydrogenase-like, N-terminal domain Armadillo repeat AldE-Hyde ferredoxin oxidoreductase, C-terminal domains Arp2/3 complex 16 kDa subunit ARPC5 AldE-Hyde ferredoxin oxidoreductase, N-terminal domain Arylsulfatase Aspartate/ornithine carbamoyltransferase Calmodulin-like Aspartokinase allosteric domain-like Calpain large subunit, catalytic domain (domain II) ATP synthase Calpain large subunit, middle domain (domain III) ATP synthase (F1-ATPase), gamma subunit cAMP-binding domain a tRNA synthase domain CAPPD, an extracellular domain of amyloid beta A4 protein Atu0492-like Cell cycle transcription factor e2f-dp Avirulence protein AvrPto Cell division protein ZapA-like B12-dependent (class II) ribonucleotide reductase Cellulases catalytic domain Bacterial dinuclear zinc exopeptidases Cellulose-binding domain family III Bacterial exopeptidase dimerisation domain Centromere-binding Bacterial GAP domain Cfr10I/Bse634I Bacterial glucoamylase C-terminal domain-like Chaperone J-domain Bacterial glucoamylase N-terminal domain-like Chemotaxis phosphatase CheZ Bacterial photosystem II reaction centre, L and M subunits Chemotaxis protein CheA P1 domain Bacterial tryptophan 2,3-dioxygenase CheW-like Bacteriophage CII protein Cholesterol oxidase Bacteriorhodopsin-like Choline/Carnitine O-acyltransferase BAG domain Circadian clock protein KaiA, C-terminal domain Band 7/SPFH domain Class I alpha-1;2-mannosidase, catalytic domain BAR domain Class I aminoacyl-tRNA synthetases (RS), catalytic domain Barrier-to-autointegration factor, BAF Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic BAS1536-like domain BC ATP-binding domain-like Class-II DAHP synthetase BC C-terminal domain-like Class II glutamine amidotransferases Bcl-2 inhibitors of programmed cell death Class III anaerobic ribonucleotide reductase NRDD subunit BC N-terminal domain-like clathrin assemblies Beta-D-glucan exohydrolase, C-terminal domain Clostridium neurotoxins, catalytic domain beta-Lactamase/D-ala carboxypeptidase Clostridium neurotoxins, "coiled-coil" domain beta-Phosphoglucomutase-like Clostridium neurotoxins, C-terminal domain Biotin repressor-like Clostridium neurotoxins, the second last domain BRCA2 helical domain CMD-like BRCA2 tower domain Cobalamin adenosyltransferase Bromodomain Cobalamin (vitamin B12)-binding domain Calcium ATPase, transduction domain A CO dE-Hydrogenase flavoprotein C-terminal domain-like Calcium ATPase, transmembrane domain M CO dE-Hydrogenase flavoprotein N-terminal domain-like CO dE-Hydrogenase ISP C-domain like Cytochrome c'-like CO dE-Hydrogenase molybdoprotein N-domain-like Cytochrome c oxidase subunit III-like Coiled-coil domain of nucleotide exchange factor GrpE Cytochrome c oxidase subunit II-like, transmembrane Cold shock DNA-binding domain-like region Colicin E3 receptor domain Cytochrome c oxidase subunit I-like Computational models partly based on NMR data Cytochrome P450 Conserved hypothetical protein MTH1747 Cytochrome p450 reductase N-terminal domain-like CorA soluble domain-like Cytoplasmic domain of inward rectifier potassium channel Coronavirus NSP8-like D-aminoacid aminotransferase-like PLP-dependent Coronavirus S2 glycoprotein enzymes COX17-like DBL homology domain (DH-domain) Creatinase/aminopeptidase Dcp2 box A domain Creatinase/prolidase N-terminal domain Decarboxylase Crotonase-like DE-Hydroquinate synthase, DHQS Cryptochrome/photolyase FAD-binding domain delta-Endotoxin, C-terminal domain Cryptochrome/photolyase, N-terminal domain delta-Endotoxin (insectocide), middle domain CSE2-like delta-Endotoxin (insectocide), N-terminal domain C-terminal domain of alpha and beta subunits of F1 ATP Designed four-helix bundle protein synthase Designed single chain threE-Helix bundle C-terminal domain of class I lysyl-tRNA synthetase DHN aldolase/epimerase C-terminal domain of DFF45/ICAD (DFF-C domain) Dihydrodipicolinate reductase-like C-terminal domain of eukaryotic peptide chain release Dimeric chorismate mutase factor subunit 1, ERF1 Dimerisation domain of CENP-B C-terminal domain of Ku80 Dimerization-anchoring domain of cAMP-dependent PK C-terminal fragment of elongation factor SelB regulatory subunit C-terminal fragment of thermolysin DinB-like C-terminal UvrC-binding domain of UvrB Diol dE-Hydratase, gamma subunit CUE domain DLC Cullin homology domain DNA-binding N-terminal domain of transcription activators Cullin repeat DNA-binding protein Mj223 Cyclin DNA damage-inducible protein DinI Cyclophilin (peptidylprolyl isomerase) DnaK suppressor protein DksA, alpha-hairpin domain Cytochrome b562 DNA ligase/mRNA capping enzyme postcatalytic domain Cytochrome b of cytochrome bc1 complex DNA polymerase I (Ubiquinol-cytochrome c reductase) DNA polymerase III clamp loader subunits, C-terminal domain Exocyst complex component DnaQ-like 3'-5' exonuclease Exodeoxyribonuclease V beta chain (RecC), C-terminal DNA repair protein MutS, domain I domain DNA repair protein MutS, domain II EXOSC10 HRDC domain-like DNA repair protein MutS, domain III Extended AAA-ATPase domain DNA topoisomerase IV, alpha subunit F1F0 ATP synthase subunit A Domain of poly(ADP-ribose) polymerase F1F0 ATP synthase subunit C Domain of the SRP/SRP receptor G-proteins FAD-linked oxidases, N-terminal domain Double Clp-N motif FAD-linked reductases, N-terminal domain double-SIS domain FAD/NAD-linked reductases, dimerisation (C-terminal) E2 regulatory, transactivation domain domain EF2458-like FAD/NAD-linked reductases, N-terminal and central EF-hand modules in multidomain proteins domains eIF-2-alpha, C-terminal domain FAT domain of focal adhesion kinase eIF2alpha middle domain-like Fe,Mn superoxide dismutase (SOD), C-terminal domain Electron transfer flavoprotein-ubiquinone Fe,Mn superoxide dismutase (SOD), N-terminal domain oxidoreductase-like FemXAB nonribosomal peptidyltransferases Elongation factor Ts (EF-Ts), dimerisation domain Ferredoxin domains from multidomain proteins EntA-Im Ferritin Enzyme IIa from lactose specific PTS, IIa-lac Fertilization protein Enzyme I of the PEP:sugar phosphotransferase system FHV B2 protein-like HPr-binding (sub)domain Fibrinogen coiled-coil and central regions EpoxidE-Hydrolase FIS-like Epsilon subunit of F1F0-ATP synthase C-terminal domain FKBP12-rapamycin-binding domain of Epsilon subunit of F1F0-ATP synthase N-terminal domain FKBP-rapamycin-associated protein (FRAP) ERP29 C domain-like FKBP immunophilin/proline isomerase ERP29 N domain-like Flagellar export chaperone FliS ESAT-6 like FMN-linked oxidoreductases E-set domains of sugar-utilizing enzymes Formate dE-Hydrogenase N, cytochrome (gamma) subunit ETF-QO domain-like Formin homology 2 domain (FH2 domain) Eukaryotic DNA topoisomerase I, catalytic core Fumarate reductase respiratory complex cytochrome b Eukaryotic DNA topoisomerase I, dispensable insert domain subunit, FrdC Eukaryotic DNA topoisomerase I, N-terminal DNA-binding Fungal zinc peptidase fragment GABA-aminotransferase-like Eukaryotic type KH-domain (KH-domain type I) GAPDH-like GAT domain Heat-inducible transcription repressor HrcA, N-terminal Gated mechanosensitive channel domain G domain-linked domain Heat shock protein 70kD (HSP70), C-terminal subdomain Glutamate-cysteine ligase Heat shock protein 70kD (HSP70), peptide-binding domain Glutamyl tRNA-reductase catalytic, N-terminal domain Hect, E3 ligase catalytic domain Glutamyl tRNA-reductase dimerization domain Helical scaffold and wing domains of SecA Glutathione peroxidase-like Hemerythrin Glutathione S-transferase (GST), C-terminal domain Hepatitis B viral capsid (hbcag) Glutathione S-transferase (GST), N-terminal
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