Dispersal Limitations of Early Life Stages and Sibling Aggregations In
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An integrated morpho-molecular approach to delineate species boundaries of Millepora from the Red Sea Item Type Article Authors Arrigoni, Roberto; Maggioni, Davide; Montano, Simone; Hoeksema, Bert W.; Seveso, Davide; Shlesinger, Tom; Terraneo, Tullia Isotta; Tietbohl, Matthew; Berumen, Michael L. Citation Arrigoni R, Maggioni D, Montano S, Hoeksema BW, Seveso D, et al. (2018) An integrated morpho-molecular approach to delineate species boundaries of Millepora from the Red Sea. Coral Reefs. Available: http://dx.doi.org/10.1007/s00338-018-01739-8. Eprint version Post-print DOI 10.1007/s00338-018-01739-8 Publisher Springer Nature Journal Coral Reefs Rights Archived with thanks to Coral Reefs Download date 05/10/2021 19:48:14 Link to Item http://hdl.handle.net/10754/629424 Manuscript Click here to access/download;Manuscript;CORE Arrigoni et al Millepora.docx Click here to view linked References 1 2 3 4 1 An integrated morpho-molecular approach to delineate species boundaries of Millepora from the Red Sea 5 6 2 7 8 3 Roberto Arrigoni1, Davide Maggioni2,3, Simone Montano2,3, Bert W. Hoeksema4, Davide Seveso2,3, Tom Shlesinger5, 9 10 4 Tullia Isotta Terraneo1,6, Matthew D. Tietbohl1, Michael L. Berumen1 11 12 5 13 14 6 Corresponding author: Roberto Arrigoni, [email protected] 15 16 7 1Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah 17 18 8 University of Science and Technology, Thuwal 23955-6900, Saudi Arabia 19 20 9 2Dipartimento di Scienze dell’Ambiente e del Territorio (DISAT), Università degli Studi di Milano-Bicocca, Piazza 21 22 10 della Scienza 1, Milano 20126, Italy 23 24 11 3Marine Research and High Education (MaRHE) Center, Faafu Magoodhoo 12030, Republic of the Maldives 25 26 12 4Taxonomy and Systematics Group, Naturalis Biodiversity Center, P.O. -
Cnidarian Phylogenetic Relationships As Revealed by Mitogenomics Ehsan Kayal1,2*, Béatrice Roure3, Hervé Philippe3, Allen G Collins4 and Dennis V Lavrov1
Kayal et al. BMC Evolutionary Biology 2013, 13:5 http://www.biomedcentral.com/1471-2148/13/5 RESEARCH ARTICLE Open Access Cnidarian phylogenetic relationships as revealed by mitogenomics Ehsan Kayal1,2*, Béatrice Roure3, Hervé Philippe3, Allen G Collins4 and Dennis V Lavrov1 Abstract Background: Cnidaria (corals, sea anemones, hydroids, jellyfish) is a phylum of relatively simple aquatic animals characterized by the presence of the cnidocyst: a cell containing a giant capsular organelle with an eversible tubule (cnida). Species within Cnidaria have life cycles that involve one or both of the two distinct body forms, a typically benthic polyp, which may or may not be colonial, and a typically pelagic mostly solitary medusa. The currently accepted taxonomic scheme subdivides Cnidaria into two main assemblages: Anthozoa (Hexacorallia + Octocorallia) – cnidarians with a reproductive polyp and the absence of a medusa stage – and Medusozoa (Cubozoa, Hydrozoa, Scyphozoa, Staurozoa) – cnidarians that usually possess a reproductive medusa stage. Hypothesized relationships among these taxa greatly impact interpretations of cnidarian character evolution. Results: We expanded the sampling of cnidarian mitochondrial genomes, particularly from Medusozoa, to reevaluate phylogenetic relationships within Cnidaria. Our phylogenetic analyses based on a mitochogenomic dataset support many prior hypotheses, including monophyly of Hexacorallia, Octocorallia, Medusozoa, Cubozoa, Staurozoa, Hydrozoa, Carybdeida, Chirodropida, and Hydroidolina, but reject the monophyly of Anthozoa, indicating that the Octocorallia + Medusozoa relationship is not the result of sampling bias, as proposed earlier. Further, our analyses contradict Scyphozoa [Discomedusae + Coronatae], Acraspeda [Cubozoa + Scyphozoa], as well as the hypothesis that Staurozoa is the sister group to all the other medusozoans. Conclusions: Cnidarian mitochondrial genomic data contain phylogenetic signal informative for understanding the evolutionary history of this phylum. -
The Evolution of the Mitochondrial Genomes of Calcareous Sponges and Cnidarians Ehsan Kayal Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2012 The evolution of the mitochondrial genomes of calcareous sponges and cnidarians Ehsan Kayal Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Evolution Commons, and the Molecular Biology Commons Recommended Citation Kayal, Ehsan, "The ve olution of the mitochondrial genomes of calcareous sponges and cnidarians" (2012). Graduate Theses and Dissertations. 12621. https://lib.dr.iastate.edu/etd/12621 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. The evolution of the mitochondrial genomes of calcareous sponges and cnidarians by Ehsan Kayal A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Ecology and Evolutionary Biology Program of Study Committee Dennis V. Lavrov, Major Professor Anne Bronikowski John Downing Eric Henderson Stephan Q. Schneider Jeanne M. Serb Iowa State University Ames, Iowa 2012 Copyright 2012, Ehsan Kayal ii TABLE OF CONTENTS ABSTRACT .......................................................................................................................................... -
Life History of Millepora Hydrocorals : New Ecological and Evolutionary Perspectives from Population Genetic Approaches Caroline Eve Dube
Life History of Millepora Hydrocorals : New Ecological and Evolutionary Perspectives from Population Genetic Approaches Caroline Eve Dube To cite this version: Caroline Eve Dube. Life History of Millepora Hydrocorals : New Ecological and Evolutionary Per- spectives from Population Genetic Approaches. Populations and Evolution [q-bio.PE]. École pratique des hautes études - EPHE PARIS, 2016. English. NNT : 2016EPHE3075. tel-02105217 HAL Id: tel-02105217 https://tel.archives-ouvertes.fr/tel-02105217 Submitted on 20 Apr 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Mention « Systèmes intégrés, environnement et biodiversité » École doctorale de l’École Pratique des Hautes Études USR 3278 CRIOBE EPHE-CNRS-UPVD Life History of Millepora Hydrocorals New Ecological and Evolutionary Perspectives from Population Genetic Approaches Par Caroline E. DUBE Thèse de doctorat de Biodiversité, Génétique et Évolution Sous la direction de M. Serge PLANES, Directeur d’Etudes Sous le co-encadrement scientifique de Mme. Emilie BOISSIN Soutenue le 29 Novembre 2016 Devant un jury composé de: M. Mehdi ADJEROUD Directeur de Recherche, IRD – Examinateur Mme. Sophie ARNAUD-HAOND Chargé de Recherche, IFREMER – Rapporteur Mme. Emilie BOISSIN Dr., CRIOBE – Co-encadrant M. Pim BONGAERTS Dr., Global Change Institute – Examinateur M. -
Population Structure of the Hydrocoral Millepora Platyphylla in Habitats Experiencing Different Flow Regimes in Moorea, French Polynesia
RESEARCH ARTICLE Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia Caroline E. Dube 1,2*, Alexandre Mercière2¤, Mark J. A. Vermeij3,4, Serge Planes1,2 1 EPHE, PSL Research University, UPVD-CNRS, USR 3278 CRIOBE, Perpignan, France, 2 Laboratoire d'excellence ªCORAILº, EPHE, PSL Research University, UPVD-CNRS, USR 3278 CRIOBE, Papetoai, Moorea, 3 CARMABI Foundation, Piscaderabaai z/n, Willemstad, CuracËao, 4 Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 700, Amsterdam, The a1111111111 Netherlands a1111111111 a1111111111 ¤ Current address: Centre de Formation et de Recherche sur les Environnements MeÂditerraneÂens, UMR 5110, Univ. Perpignan Via Domitia, Perpignan, France a1111111111 * [email protected] a1111111111 Abstract While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, OPEN ACCESS where it thrives in a wide range of environments, the ecological and biological processes Citation: Dube CE, Mercière A, Vermeij MJA, Planes S (2017) Population structure of the driving its distribution and population structure are not well understood. Here, we quantified hydrocoral Millepora platyphylla in habitats this species' population structure in five habitats with contrasting hydrodynamic regimes in experiencing different flow regimes in Moorea, Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the French Polynesia. PLoS ONE 12(3): e0173513. lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped doi:10.1371/journal.pone.0173513 and measured over 45,000 m2 of surveyed reef. Due to the species' sensitivity to fragmenta- Editor: Christina A. -
Phylogenetic Analysis of Higher-Level Relationships Within
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription Ehsan Kayal1, Bastian Bentlage1, Paulyn Cartwright2, Angel A. Yanagihara3, Dhugal J. Lindsay4, Russell R. Hopcroft5 and Allen G. Collins1,6 1 Department of Invertebrate Zoology, Smithsonian Institution, Washington, DC, USA 2 Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, USA 3 Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA 4 Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan 5 Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, AK, USA 6 National Systematics Laboratory of NOAA’s Fisheries Service, National Museum of Natural History, Washington, DC, USA ABSTRACT Hydrozoans display the most morphological diversity within the phylum Cnidaria. While recent molecular studies have provided some insights into their evolutionary history, sister group relationships remain mostly unresolved, particularly at mid-taxonomic levels. Specifically, within Hydroidolina, the most speciose hydrozoan subclass, the relationships and sometimes integrity of orders are highly unsettled. Here we obtained the near complete mitochondrial sequence of twenty-six hydroidolinan hydrozoan species from a range of sources (DNA and RNA-seq data, long-range PCR). Our analyses confirm previous inference of the -
Genetic Diversity and Differentiation in Reef-Building Millepora Species, As Revealed by Cross-Species Amplification of Fifteen Novel Microsatellite Loci
Genetic diversity and differentiation in reef-building Millepora species, as revealed by cross-species amplification of fifteen novel microsatellite loci Caroline E. Dubé1,2, Serge Planes1,2, Yuxiang Zhou1, Véronique Berteaux-Lecellier2,3 and Emilie Boissin1,2 1 EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, F-66860, Perpignan, France 2 Laboratoire d'excellence ``CORAIL'', EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Papetoai, Moorea, French Polynesia 3 ENTROPIE, UMR250/9220-IRD/CNRS/UR, Laboratoire d'excellence ``CORAIL'', Nouméa, New-Caledonia ABSTRACT Quantifying the genetic diversity in natural populations is crucial to address ecological and evolutionary questions. Despite recent advances in whole-genome sequencing, microsatellite markers have remained one of the most powerful tools for a myriad of population genetic approaches. Here, we used the 454 sequencing technique to develop microsatellite loci in the fire coral Millepora platyphylla, an important reef- builder of Indo-Pacific reefs. We tested the cross-species amplification of these loci in five other species of the genus Millepora and analysed its success in correlation with the genetic distances between species using mitochondrial 16S sequences. We succeeded in discovering fifteen microsatellite loci in our target species M. platyphylla, among which twelve were polymorphic with 2–13 alleles and a mean observed heterozygosity of 0.411. Cross-species amplification in the five other Millepora species revealed a high probability of amplification success (71%) and polymorphism (59%) of the loci. Our results show no evidence of decreased heterozygosity with increasing genetic distance. However, only one locus enabled measures of genetic diversity Submitted 10 August 2016 in the Caribbean species M. -
Downloaded from Brill.Com10/08/2021 06:58:17AM Via Free Access 88 Maggioni Et Al
Contributions to Zoology, 87 (2) 87-104 (2018) Polyphyly of the genus Zanclea and family Zancleidae (Hydrozoa, Capitata) revealed by the integrative analysis of two bryozoan-associated species Davide Maggioni1, 2, 4, Roberto Arrigoni3, Paolo Galli1, 2, Michael L. Berumen3, Davide Seveso1, 2, Simone Montano1, 2 1 Marine Research and High Education (MaRHE) Center, Faafu Magoodhoo 12030, Republic of the Maldives 2 Dipartimento di Scienze dell’Ambiente e del Territorio (DISAT), Università degli Studi di Milano-Bicocca, Milano 20126, Italy 3 Red Sea Research Center, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia 4 E-mail: [email protected] Keywords: Anthoathecata, Maldives, molecular phylogenetics, Red Sea, Zanclella Abstract Contents The Zancleidae is a hydrozoan family that currently comprises Introduction ............................................................................ 87 three genera and 42 nominal species. The validity of numerous Material and methods ............................................................. 89 taxa in this family still needs to be assessed with integrative Results ..................................................................................... 92 analyses and complete life cycle descriptions. The vast majority Morphology ....................................................................... 92 of its species live symbiotically with other organisms, among Phylogeny and genetic diversity -
Population Structure of the Hydrocoral Millepora Platyphylla in Habitats Experiencing Different Flow Regimes in Moorea, French Polynesia
UvA-DARE (Digital Academic Repository) Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia Dubé, C.E.; Mercière, A.; Vermeij, M.J.A.; Planes, S. DOI 10.1371/journal.pone.0173513 Publication date 2017 Document Version Final published version Published in PLoS ONE License CC BY Link to publication Citation for published version (APA): Dubé, C. E., Mercière, A., Vermeij, M. J. A., & Planes, S. (2017). Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia. PLoS ONE, 12(3), [e0173513 ]. https://doi.org/10.1371/journal.pone.0173513 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:29 Sep 2021 RESEARCH ARTICLE Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia Caroline E. -
Contrasting Patterns of Connectivity Among Endemic and Widespread Fire Coral Species (Millepora Spp.) in the Tropical Southwestern Atlantic
Contrasting patterns of connectivity among endemic and widespread fire coral species (Millepora spp.) in the tropical Southwestern Atlantic Júlia N. de Souza,1 Flávia L.D. Nunes,2,3 Carla Zilberberg,4 Juan A. Sanchez,5 Alvaro E. Migotto,6 Bert W. Hoeksema,7 Xaymara M. Serrano,8,9 Andrew C. Baker,8 and Alberto Lindner1 1Departamento de Ecologia e Zoologia, Universidade Federal de Santa Catarina, Florianópolis, SC 88040-970, Brazil 2Laboratoire des Sciences de l’Environnement Marin, LEMAR UMR 6539 CNRS/UBO/IRD/ Ifremer, Université de Brest (UBO), Université Européenne de Bretagne (UEB), Institut Universitaire Européen de la Mer (IUEM), Plouzané, France 3Laboratoire d’Écologie Benthique Côtière, DYNECO, Ifremer Centre Bretagne, Plouzané, France 4Departamento de Zoologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil 5BIOMMAR, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia 6Centro de Biologia Marinha, Universidade de São Paulo, São Sebastião, Brazil 7Naturalis Biodiversity Center, Leiden, The Netherlands 8Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA 9Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, 4301 Rickenbacker Causeway, Miami, FL 33149, USA For publication in Coral Reefs Abstract. Fire corals are the only branching corals in the South Atlantic and provide an important ecological role as habitat-builders in the region. With three endemic species (Millepora brazilensis, M. nitida, and M. laboreli) and one amphi-Atlantic species (M. alcicornis), fire coral diversity in the Brazilian Province rivals that of the Caribbean Province. Phylogenetic relationships and patterns of population genetic structure and diversity were investigated in all four fire coral species occurring in the Brazilian Province to understand patterns of speciation and biogeography in the genus. -
Millepora Platyphylla.Pdf
Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia Caroline E. Dubé, Alexandre Mercière, Mark J.A Vermeij, Serge Planes To cite this version: Caroline E. Dubé, Alexandre Mercière, Mark J.A Vermeij, Serge Planes. Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia. PLoS ONE, Public Library of Science, 2017, 10.1371/journal.pone.0173513. hal- 01561659 HAL Id: hal-01561659 https://hal-univ-perp.archives-ouvertes.fr/hal-01561659 Submitted on 13 Jul 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. RESEARCH ARTICLE Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia Caroline E. Dube 1,2*, Alexandre Mercière2¤, Mark J. A. Vermeij3,4, Serge Planes1,2 1 EPHE, PSL Research University, UPVD-CNRS, USR 3278 CRIOBE, Perpignan, France, 2 Laboratoire d'excellence ªCORAILº, EPHE, PSL Research University, UPVD-CNRS, USR 3278 CRIOBE, Papetoai, Moorea, 3 CARMABI Foundation, Piscaderabaai z/n, Willemstad, CuracËao, 4 Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 700, Amsterdam, The a1111111111 Netherlands a1111111111 a1111111111 ¤ Current address: Centre de Formation et de Recherche sur les Environnements MeÂditerraneÂens, UMR 5110, Univ. -
Annotated Checklist for Stony Corals of American Saˉmoa With
ISSN 1313-2970 (online) ISSN 1313-2989 (print) A peer-reviewed open-access journal ZooKeys 849 2019 Launched to accelerate biodiversity research The coral reefs of American Sāmoa have been studied for over 100 years, yet there has not been a complete synthesis of the stony coral diversity by within the region. To address this gap, we present a detailed annotated RECORDS DEPTH MESOPHOTIC TO REFERENCE WITH SĀMOA AMERICAN OF CORALS STONY FOR CHECKLIST ANNOTATED Anthony D. Montgomery, Douglas Fenner, Robert J. Toonen J. Robert Fenner, Douglas Anthony D. Montgomery, analysis of the shallow and mesophotic stony coral species of American ANNOTATED CHECKLIST FOR Sāmoa including scleractinian, milleporid, stylasterid, and helioporid spe- STONY CORALS OF AMERICAN cies. The information is presented in a manner that allows a reader to evaluate any given report beyond our analysis to account for various levels SĀMOA WITH REFERENCE TO of observational or taxonomical uncertainty. We further cross reference all MESOPHOTIC DEPTH RECORDS species names to those listed in Corals of the World to provide insight to different interpretations of species concepts. We present a total of 377 valid species from American Sāmoa with 342 BY ANTHONY D. MONTGOMERY, DOUGLAS FENNER, ROBERT J. TOONEN species considered either present (251) or possibly present (91). Of these 342 species, 66 have a recorded geographical range extension and 90 have been reported from mesophotic depths (30–150 m). Additionally, four new species records (Acanthastrea subechinata Veron, 2000, Favites paraflexuosus Veron, 2000, Echinophyllia echinoporoides Veron & Pichon, 1980, Turbinaria irregularis Bernard, 1896) are presented. We further discuss the species with special designation under the US Endangered Species Act and the Interna- tional Union for Conservation of Nature’s Red List of threatened species.