Supplemental table 1. List of proteins identified by mass spectrometry

Spot no.* Accession no.† prot_acc† prot_desc† prot_pi‡ prot_mass‡prot_score§ prot_matches prot_cover pep_exp_z pep_exp_mz pep_exp_mr pep_calc_mr pep_delta pep_miss pep_score pep_seq pep_var_mod 261 Q9H3P7 GCP60_HUMAN Golgi resident protein GCP60 (Acyl-CoA-binding domain-containing protein 3) 5.02 60841 166 2 5.5 2 701.7546 1401.4946 1400.726 0.7687 0 94.85 IQQDADSVITVGR 2 809.7961 1617.5776 1615.8417 1.7359 0 74.28 QQEVVVAGSSLPTSSK Cytoskeleton-associated protein 4 (63 kDa membrane protein) (p63) - Homo 343 Q07065 CKAP4_HUMAN 5.63 66097 172 3 5.63 2 494.0881 986.1616 985.5808 0.5809 0 43.74 LALQALTEK sapiens (Human) 2 895.0272 1788.0398 1787.8247 0.2151 0 83.75 STLQTMESDIYTEVR Oxidation (M) 3 675.1238 2022.3496 2021.029 1.3206 0 47.4 VQEQVHTLLSQDQAQAAR Histidyl-tRNA synthetase, cytoplasmic (EC 6.1.1.21) (Histidine--tRNA ) 384 P12081 SYHC_HUMAN 5.72 57944 568 9 18.3 2 472.6396 943.2646 943.4611 -0.1964 0 34.12 AQLGPDESK (HisRS) - Homo sapiens (Human) 2 496.3666 990.7186 990.5498 0.1688 0 53.03 IFSIVEQR 2 523.0436 1044.0726 1042.5659 1.5068 0 54.63 QALEGLGDLK 2 541.5847 1081.1548 1080.5604 0.5945 0 40.98 YDLTVPFAR 2 544.3171 1086.6196 1086.5669 0.0527 0 70.59 DQGGELLSLR 2 615.7377 1229.4608 1229.6656 -0.2047 0 56.87 LVSELWDAGIK 2 629.5746 1257.1346 1256.5747 0.5599 0 66.16 YDGLVGMFDPK Oxidation (M) 2 644.9526 1287.8906 1287.6558 0.2349 0 100.4 ASAELIEEEVAK 2 688.5876 1375.1606 1374.7355 0.4252 0 100.21 TTETQVLVASAQK Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response mediator Q16555 DPYL2_HUMAN 5.95 62711 380 7 13.1 2 516.5612 1031.1078 1030.5407 0.5672 0 78.24 SSAEVIAQAR protein 2) (CRMP-2) (N2A3) - Homo sapiens (Human) 2 543.0792 1084.1438 1083.6288 0.515 0 66.03 GSPLVVISQGK 2 571.1401 1140.2656 1139.6015 0.6641 0 36.83 KPFPDFVYK 2 662.6376 1323.2606 1322.7558 0.5049 0 58.95 QIGENLIVPGGVK 3 562.2702 1683.7888 1681.8635 1.9252 0 63.03 IVLEDGTLHVTEGSGR 2 863.7051 1725.3956 1724.8039 0.5917 0 51.96 MDENQFVAVTSTNAAK 2 871.0547 1740.0948 1740.7989 -0.704 0 77.3 MDENQFVAVTSTNAAK Oxidation (M) Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform (EC Q08209 PP2BA_HUMAN 3.1.3.16) (Calmodulin-dependent calcineurin A subunit alpha isoform) (CAM-PRP 5.58 59335 145 3 7.1 2 458.9941 915.9736 915.5025 0.4711 0 52.92 LEESVALR catalytic subunit) - Homo sapiens (Human) 2 624.5021 1246.9896 1246.6306 0.359 0 61.26 LFEVGGSPANTR 2 795.0132 1588.0118 1586.8338 1.178 0 34.4 GLTPTGMLPSGVLSGGK Oxidation (M) 476 Q9GZL7 WDR12_HUMAN WD repeat protein 12 (YTM1 homolog) - Homo sapiens (Human) 5.57 48191 76 2 4.3 2 459.2366 916.4586 916.4978 -0.0391 0 40.99 TEQLGLTR 2 560.5931 1119.1716 1118.5608 0.6109 0 40.19 VWDVESGSLK 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory 516 P55036 PSMD4_HUMAN subunit S5A) (Rpn10) (Multiubiquitin chain-binding protein) (Antisecretory factor 4.68 40939 376 8 19.1 2 589.8577 1177.7008 1176.6503 1.0506 0 62.62 LTAFVNTLNGK 1) (AF) (ASF) - Homo sapiens (Human) 2 590.5566 1179.0986 1177.5761 1.5226 0 81.72 NAMGSLASQATK 2 598.0807 1194.1468 1193.571 0.5758 0 91.29 NAMGSLASQATK Oxidation (M) 2 599.0172 1196.0198 1195.5656 0.4543 0 76.16 MTISQQEFGR 2 607.0942 1212.1738 1211.5605 0.6134 0 59.54 MTISQQEFGR Oxidation (M) 2 759.6102 1517.2058 1516.7773 0.4285 0 66.76 IIAFVGSPVEDNEK 2 1160.849 2319.6834 2319.1077 0.5757 0 87.19 AAAASAAEAGIATTGTEDSDDALLK 3 774.3995 2320.1767 2319.1077 1.0689 0 67.59 AAAASAAEAGIATTGTEDSDDALLK Alpha-1-acid glycoprotein 1 precursor (AGP 1) (Orosomucoid-1) (OMD 1) - 565 P02763 A1AG1_HUMAN 4.93 23725 138 3 15.9 2 498.1056 994.1966 993.5131 0.6835 0 46.45 TEDTIFLR Homo sapiens (Human) 2 557.0057 1111.9968 1111.5186 0.4782 0 45.69 SDVVYTDWK 3 570.6505 1708.9297 1707.8468 1.0829 0 48.92 NWGLSVYADKPETTK Gamma- (EC 4.2.1.11) (2-phospho-D-glycerate hydro-) (Neural 571 P09104 ENOG_HUMAN 4.91 47581 342 7 14.1 2 566.1282 1130.2418 1129.6131 0.6287 0 62.4 LGAEVYHTLK enolase) (-specific enolase) (NSE) (Enolase 2) - Homo sapiens (Human) 2 580.8821 1159.7496 1159.5357 0.214 0 42.98 IEEELGDEAR 2 580.8972 1159.7798 1159.5357 0.2442 0 35.89 IEEELGDEAR 2 581.3456 1160.6766 1159.5357 1.141 0 60.81 IEEELGDEAR 2 704.5442 1407.0738 1405.7089 1.3649 0 75.92 GNPTVEVDLYTAK 2 794.0746 1586.1346 1585.781 0.3536 0 86.85 IVIGMDVAASEFYR Oxidation (M) 2 810.6921 1619.3696 1619.7712 -0.4016 0 65.72 LDNLMLELDGTENK Oxidation (M) Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4- 574 Q9UQ80 PA2G4_HUMAN 6.13 44101 292 6 15 2 467.2361 932.4576 931.5087 0.949 0 46.93 ALLQSSASR 1) (ErbB3-binding protein 1) - Homo sapiens (Human) 2 491.1116 980.2086 980.4815 -0.2728 0 39.76 SDQDYILK 2 527.6252 1053.2358 1053.5131 -0.2773 0 42.36 EGEFVAQFK 2 606.9211 1211.8276 1212.5002 -0.6726 0 45.43 GDAMIMEETGK 2 Oxidation (M) 2 643.5627 1285.1108 1284.6674 0.4435 0 55.43 TIIQNPTDQQK 2 648.2567 1294.4988 1293.5758 0.923 0 68.79 SEMEVQDAELK Oxidation (M) Pyruvate dehydrogenase E1 component alpha subunit, somatic form, P08559 ODPA_HUMAN 8.35 43952 288 6 14.6 2 467.0436 932.0726 931.5048 0.5678 0 35.04 SDPIMLLK Oxidation (M) mitochondrial precursor (EC 1.2.4.1) (PDHE1-A type I) - Homo sapiens (Human) 2 496.0491 990.0836 988.4502 1.6335 0 58.4 AAASTDYYK 2 500.1531 998.2916 998.4491 -0.1575 0 60.66 YGMGTSVER 2 501.1691 1000.3236 1000.5553 -0.2316 0 44.78 EILAELTGR 2 516.2212 1030.4278 1029.572 0.8559 1 42.26 RGDFIPGLR 2 706.5972 1411.1798 1410.7719 0.408 0 58.95 LEEGPPVTTVLTR P26641 EF1G_HUMAN Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) - Homo sapiens 6.25 50429 157 2 5.9 2 674.4421 1346.8696 1346.7306 0.139 0 98.11 ALIAAQYSGAQVR 2 723.0361 1444.0576 1443.7205 0.3371 0 58.65 LDPGSEETQTLVR Alpha-enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (Non-neural P06733 ENOA_HUMAN enolase) (NNE) (Enolase 1) (Phosphopyruvate hydratase) (C-myc promoter- 7.01 47481 82 2 4.4 2 481.1686 960.3226 959.4924 0.8303 0 36.17 LNVTEQEK binding protein) (MBP-1) (MPB-1) (Plasminogen-binding protein) - Homo sapiens 2 657.2347 1312.4548 1311.5686 0.8862 0 48.53 LMIEMDGTENK 2 Oxidation (M) Interleukin enhancer-binding factor 2 (Nuclear factor of activated T-cells 45 kDa) - 598 Q12905 ILF2_HUMAN 5.19 43263 99 2 5.9 2 619.0937 1236.1728 1235.7601 0.4127 0 47.24 ILITTVPPNLR Homo sapiens (Human) 2 713.5176 1425.0206 1424.6572 0.3635 0 54.57 WFEENASQSTVK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon 672 P08865 RSSA_HUMAN laminin-binding protein) (NEM/1CHD4) (Multidrug resistance-associated protein 4.79 32947 137 2 7.1 2 457.0716 912.1286 911.544 0.5846 0 44.57 LLVVTDPR MGr1-Ag) - Homo sapiens (Human) 2 602.3192 1202.6238 1202.6408 -0.0169 0 92.42 FAAATGATPIAGR Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP core protein C-like 1) - 698 O60812 HNRCL_HUMAN 4.93 32180 4.93 2 3.4 2 498.5336 995.0526 994.4971 0.5555 0 50.3 SDVEAIFSK Homo sapiens (Human) 2 562.7482 1123.4818 1122.5921 0.8898 1 42.53 KSDVEAIFSK Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2) - P07910 HNRPC_HUMAN 4.95 33707 4.95 2 3.3 2 498.5336 995.0526 994.4971 0.5555 0 50.3 SDVEAIFSK Homo sapiens (Human) 2 562.7482 1123.4818 1122.5921 0.8898 1 42.53 KSDVEAIFSK 711 P08670 VIME_HUMAN - Homo sapiens (Human) 5.06 53676 163 3 6.7 2 545.2076 1088.4006 1087.5258 0.8749 0 41.31 QDVDNASLAR 2 547.5591 1093.1036 1092.52 0.5837 0 69.81 FADLSEAANR 2 662.6287 1323.2428 1322.6102 0.6326 0 54.83 EEAENTLQSFR Mitogen-activated protein kinase 14 (EC 2.7.11.24) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Cytokine suppressive anti- 713 Q16539 MK14_HUMAN 5.48 41495 90 2 5.3 2 452.7581 903.5016 903.5178 -0.0161 0 47.71 ILDFGLAR inflammatory drug-binding protein) (CSAID-binding protein) (CSBP) (MAX- interacting protein 2) (MAP kina 2 549.6042 1097.1938 1096.6492 0.5446 0 42.08 LVGTPGAELLK 726 P08670 VIME_HUMAN Vimentin - Homo sapiens (Human) 5.06 53676 285 5 10.3 2 453.1941 904.3736 904.425 -0.0514 0 41.7 GTNESLER 2 544.8157 1087.6168 1087.5258 0.0911 0 61.76 QDVDNASLAR 2 547.2902 1092.5658 1092.52 0.0459 0 82.57 FADLSEAANR 2 568.0417 1134.0688 1133.5387 0.5302 0 65.18 LQDEIQNMK Oxidation (M) 2 662.6127 1323.2108 1322.6102 0.6006 0 40.17 EEAENTLQSFR Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A) (Template-activating Q01105 SET_HUMAN factor I) (TAF-I) (HLA-DR-associated protein II) (PHAPII) (Inhibitor of granzyme 4.23 33469 224 4 13.8 1 660.491 659.4837 659.3854 0.0984 0 35.25 SELIAK A-activated DNase) (IGAAD) - Homo sapiens (Human) 2 604.7012 1207.3878 1207.5972 -0.2094 0 46.17 VEVTEFEDIK 2 637.4177 1272.8208 1272.6561 0.1648 0 69.59 LNEQASEEILK 2 724.0627 1446.1108 1445.6423 0.4686 0 72.96 EFHLNESGDPSSK Nascent polypeptide-associated complex subunit alpha (NAC-alpha) (Alpha-NAC) 767 Q13765 NACA_HUMAN 4.52 23370 280 5 25.6 2 740.2042 1478.3938 1476.7242 1.6696 0 85.15 DIELVMSQANVSR Oxidation (M) (Hom s 2.02) - Homo sapiens (Human) 3 495.8685 1484.5837 1483.7195 0.8642 0 43.97 SPASDTYIVFGEAK 3 517.4822 1549.4248 1548.8916 0.5332 0 37.76 NILFVITKPDVYK 2 775.7952 1549.5758 1548.8916 0.6843 0 37.35 NILFVITKPDVYK 2 807.9072 1613.7998 1613.826 -0.0262 0 113.18 IEDLSQQAQLAAAEK Matrix-remodelling-associated protein 7 (Transmembrane anchor protein 1) - P84157 MXRA7_HUMAN 4.24 21509 129 2 11.8 2 531.3292 1060.6438 1060.4672 0.1766 0 39.66 EELEEEQR Homo sapiens (Human) 2 929.0671 1856.1196 1855.7894 0.3302 0 89.43 ETFGEMSDGDVQEQLR Oxidation (M) MARCKS-related protein (MARCKS-like protein 1) (Macrophage myristoylated 780 P49006 MRP_HUMAN alanine-rich C kinase substrate) (Mac-MARCKS) (MacMARCKS) - Homo sapiens 4.68 19574 117 2 14.4 2 664.7122 1327.4098 1326.6415 0.7683 0 44.98 AAATPESQEPQAK (Human) 2 687.5536 1373.0926 1372.647 0.4456 0 71.61 GDVTAEEAAGASPAK 809 P12004 PCNA_HUMAN Proliferating cell nuclear antigen (PCNA) (Cyclin) - Homo sapiens (Human) 4.57 29092 205 4 13.8 2 450.5661 899.1176 899.4535 -0.3358 0 34.83 IADMGHLK Oxidation (M) 2 456.0086 910.0026 909.4014 0.6012 0 49.02 MPSGEFAR Oxidation (M) 2 466.9916 931.9686 931.4803 0.4883 0 38.38 YLNFFTK 2 647.9747 1293.9348 1292.6361 1.2988 0 83.01 FSASGELGNGNIK MARCKS-related protein (MARCKS-like protein 1) (Macrophage myristoylated P49006 MRP_HUMAN alanine-rich C kinase substrate) (Mac-MARCKS) (MacMARCKS) - Homo sapiens 4.68 19574 118 2 14.4 2 664.6816 1327.3486 1326.6415 0.7071 0 64.27 AAATPESQEPQAK (Human) 2 687.3292 1372.6438 1372.647 -0.0032 0 54.03 GDVTAEEAAGASPAK 829 P37837 TALDO_HUMAN Transaldolase (EC 2.2.1.2) - Homo sapiens (Human) 6.36 37688 237 5 11.6 2 464.0471 926.0796 925.3963 0.6833 0 41.11 MFNAENGK Oxidation (M) 2 464.2051 926.3956 925.3963 0.9993 0 45.83 MFNAENGK Oxidation (M) 2 499.5761 997.1376 996.5063 0.6314 0 60.38 TIVMGASFR Oxidation (M) 2 537.0652 1072.1158 1073.5353 -1.4194 0 54.98 LGGSQEDQIK 2 639.1426 1276.2706 1275.6459 0.6247 0 79.36 LSSTWEGIQAGK Matrix-remodelling-associated protein 7 (Transmembrane anchor protein 1) - 889 P84157 MXRA7_HUMAN 4.24 21509 124 4 9.3 2 463.2891 924.5636 925.4617 -0.8981 0 36.62 GAAASPEPAR Homo sapiens (Human) 2 531.1757 1060.3368 1060.4672 -0.1304 0 38.67 EELEEEQR 2 531.5297 1061.0448 1060.4672 0.5776 0 50.76 EELEEEQR 2 542.1577 1082.3008 1081.5628 0.738 1 36.83 RGAAASPEPAR Matrix-remodelling-associated protein 7 (Transmembrane anchor protein 1) - 892 P84157 MXRA7_HUMAN 4.24 21509 139 4 9.3 2 463.9441 925.8736 925.4617 0.4119 0 50.65 GAAASPEPAR Homo sapiens (Human) 2 464.1011 926.1876 925.4617 0.7259 0 36.36 GAAASPEPAR 2 531.4576 1060.9006 1060.4672 0.4334 0 45.8 EELEEEQR 2 542.0146 1082.0146 1081.5628 0.4518 1 42.39 RGAAASPEPAR Peroxiredoxin-6 (EC 1.11.1.15) (Antioxidant protein 2) (1-Cys peroxiredoxin) (1- 1131 P30041 PRDX6_HUMAN Cys PRX) (Acidic calcium-independent phospholipase A2) (EC 3.1.1.-) (aiPLA2) 6 25133 80 2 8 2 504.9496 1007.8846 1006.5488 1.3359 0 34.36 VVFVFGPDK (Non-selenium glutathione peroxidase) (EC 1.11.1.7) (NSGPx) (24 kDa protein) 2 543.3792 1084.7438 1084.5917 0.1522 0 45.97 LPFPIIDDR Chromobox protein homolog 3 (Heterochromatin protein 1 homolog gamma) (HP1 1289 Q13185 CBX3_HUMAN 5.23 20969 112 2 13.1 2 585.5826 1169.1506 1168.4731 0.6775 0 51.47 SLSDSESDDSK gamma) (Modifier 2 protein) (HECH) - Homo sapiens (Human) 2 767.7672 1533.5198 1532.7246 0.7953 0 60.3 VEEAEPEEFVVEK 1371 Q9BU61 CC060_HUMAN Uncharacterized protein C3orf60 - Homo sapiens (Human) 8.48 20566 114 3 11.4 2 587.1547 1172.2948 1172.6336 -0.3387 0 34.36 LQSQVLQAMR 2 594.9822 1187.9498 1188.6285 -0.6786 0 46.99 LQSQVLQAMR Oxidation (M) 2 653.8116 1305.6086 1305.6201 -0.0114 0 66.89 LSPADDELYQR ATP synthase subunit beta, mitochondrial precursor (EC 3.6.3.14) - Homo sapiens 1441 P06576 ATPB_HUMAN 5.26 56525 101 2 4.2 2 545.5602 1089.1058 1087.6277 1.4781 0 42.87 VVDLLAPYAK (Human) 2 640.0406 1278.0666 1277.6286 0.4381 0 57.84 TIAMDGTEGLVR Oxidation (M) 2 808.3467 1614.6788 1612.8937 1.7852 0 79.18 LVINGNPITIFQER Small ubiquitin-related modifier 2 precursor (SUMO-2) (Ubiquitin-like protein 1482 P61956 SUMO2_HUMAN 5.32 10921 79 2 23.2 2 599.9832 1197.9518 1196.5785 1.3733 0 48.77 TENNDHINLK SMT3B) (SMT3 homolog 2) (Sentrin-2) (HSMT3) (SUMO-3) - Homo sapiens 2 617.8912 1233.7678 1233.6354 0.1325 0 66.24 VAGQDGSVVQFK -associated antigen 4 (MAGE-4 antigen) (MAGE-X2) (MAGE-41) - 2026 P43358 MAGA4_HUMAN 4.68 35136 106 3 7.9 2 462.1341 922.2536 921.4994 0.7543 0 34.03 MIFGIDVK Homo sapiens (Human) 2 534.0687 1066.1228 1066.5236 -0.4008 0 34.77 YEFLWGPR 2 544.6476 1087.2806 1086.5094 0.7712 0 39.95 EHTVYGEPR Melanoma-associated antigen 4 (MAGE-4 antigen) (MAGE-X2) (MAGE-41) - 2027 P43358 MAGA4_HUMAN 4.68 35136 78 2 5.4 2 534.5872 1067.1598 1066.5236 0.6362 0 44.55 YEFLWGPR Homo sapiens (Human) 2 544.5436 1087.0726 1086.5094 0.5632 0 35.91 EHTVYGEPR 2061 P68371 TBB2C_HUMAN Tubulin beta-2C chain (Tubulin beta-2 chain) - Homo sapiens (Human) 4.79 50255 242 6 12.1 2 566.0637 1130.1128 1129.588 0.5249 0 66.5 FPGQLNADLR 2 580.1736 1158.3326 1158.6219 -0.2893 0 67.69 LAVNMVPFPR Oxidation (M) 2 623.3547 1244.6948 1244.586 0.1089 0 78.54 ISEQFTAMFR Oxidation (M) 2 664.7491 1327.4836 1327.6408 -0.1572 0 75.74 INVYYNEATGGK 2 724.5807 1447.1468 1445.682 1.4648 0 56.94 EVDEQMLNVQNK 2 731.8511 1461.6876 1461.6769 0.0107 0 78.43 EVDEQMLNVQNK Oxidation (M) P07437 TBB5_HUMAN Tubulin beta chain (Tubulin beta-5 chain) - Homo sapiens (Human) 4.78 50095 234 6 12.2 2 566.0637 1130.1128 1129.588 0.5249 0 66.5 FPGQLNADLR 2 580.1736 1158.3326 1158.6219 -0.2893 0 67.69 LAVNMVPFPR Oxidation (M) 2 623.3547 1244.6948 1244.586 0.1089 0 78.54 ISEQFTAMFR Oxidation (M) 2 651.4192 1300.8238 1300.6299 0.1939 0 67.66 ISVYYNEATGGK 2 724.5807 1447.1468 1445.682 1.4648 0 56.94 EVDEQMLNVQNK 2 731.8511 1461.6876 1461.6769 0.0107 0 78.43 EVDEQMLNVQNK Oxidation (M) Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase 2079 P55072 TERA_HUMAN 5.14 89950 379 16 15.6 2 453.6296 905.2446 904.425 0.8196 0 47.85 SVSDNDIR p97 subunit) (Valosin-containing protein) (VCP) - Homo sapiens (Human) 2 474.3586 946.7026 946.56 0.1427 1 43.42 KGDIFLVR 2 474.5176 947.0206 946.56 0.4607 1 55.47 KGDIFLVR 2 476.3026 950.5906 950.4709 0.1198 1 45.84 KAFEEAEK 2 481.9926 961.9706 961.4716 0.499 0 56.32 ESIESEIR 2 517.1556 1032.2966 1031.5499 0.7468 0 47.56 GDDLSTAILK 2 517.1992 1032.3838 1031.5499 0.834 0 39.24 GDDLSTAILK 2 538.2861 1074.5576 1074.5305 0.0271 0 78.62 LAGESESNLR 2 548.2062 1094.3978 1093.6495 0.7483 0 54.52 LEILQIHTK 2 558.8531 1115.6916 1115.4956 0.1961 0 98.29 GGNIGDGGGAADR 2 559.0016 1115.9886 1115.4956 0.4931 0 53.41 GGNIGDGGGAADR 2 587.0952 1172.1758 1171.6601 0.5157 0 71.41 GILLYGPPGTGK 2 665.7892 1329.5638 1328.6837 0.8802 0 86.81 WALSQSNPSALR 3 549.7512 1646.2318 1644.793 1.4388 1 34.74 KYEMFAQTLQQSR Oxidation (M) 2 856.7206 1711.4266 1710.8168 0.6098 0 68.06 VINQILTEMDGMSTK 2 Oxidation (M) 3 571.7361 1712.1865 1710.8168 1.3697 0 35.67 VINQILTEMDGMSTK 2 Oxidation (M) P20700 LMNB1_HUMAN Lamin-B1 - Homo sapiens (Human) 5.11 66653 123 3 5.6 2 485.4456 968.8766 968.4815 0.3952 0 56.36 IGDTSVSYK 2 559.6157 1117.2168 1116.5159 0.7009 0 71.78 NSQGEEVAQR 2 757.0347 1512.0548 1511.6886 0.3663 0 67.06 LSSEMNTSTVNSAR Oxidation (M) SUMO-activating subunit 2 (EC 6.3.2.-) (Ubiquitin-like 1-activating Q9UBT2 SAE2_HUMAN 5.15 71749 53 2 2.7 2 473.0956 944.1766 943.4975 0.6792 0 43.69 DQQVLDVK enzyme E1B) (Anthracycline-associated resistance ARX) - Homo sapiens (Human) 2 509.1356 1016.2566 1015.5914 0.6653 0 46.12 VTVLTLQDK Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar 2268 P06748 NPM_HUMAN 4.64 32726 335 9 26.5 1 717.664 716.6567 716.4432 0.2135 0 40.25 LLSISGK protein NO38) - Homo sapiens (Human) 2 466.9381 931.8616 930.4658 1.3958 0 57.31 GPSSVEDIK 2 512.6216 1023.2286 1022.4821 0.7465 1 40.35 ADKDYHFK 2 910.8257 1819.6368 1818.8359 0.8009 0 67.11 MTDQEAIQDLWQWR 2 918.8607 1835.7068 1834.8308 0.876 0 45.23 MTDQEAIQDLWQWR Oxidation (M) 2 1073.864 2145.7134 2144.0095 1.7039 0 96.86 DELHIVEAEAMNYEGSPIK 3 716.3351 2145.9835 2144.0095 1.9739 0 65.63 DELHIVEAEAMNYEGSPIK 2 1081.433 2160.8514 2160.0045 0.847 0 76.16 DELHIVEAEAMNYEGSPIK Oxidation (M) 2 1122.596 2243.1774 2242.2032 0.9743 0 39.7 MSVQPTVSLGGFEITPPVVLR Oxidation (M) Protein disulfide- A3 precursor (EC 5.3.4.1) (Disulfide isomerase ER-60) 2231 P30101 PDIA3_HUMAN (ERp60) (58 kDa microsomal protein) (p58) (ERp57) (58 kDa glucose-regulated 5.98 57146 178 9 16 2 498.7526 995.4906 994.556 0.9347 0 39.38 QAGPASVPLR protein) - Homo sapiens (Human) 2 543.6197 1085.2248 1083.5601 1.6648 0 47.5 YGVSGYPTLK 2 586.9467 1171.8788 1171.5332 0.3457 0 54.4 FVMQEEFSR 2 594.8376 1187.6606 1187.5281 0.1325 0 57.3 FVMQEEFSR Oxidation (M) 2 596.7717 1191.5288 1190.5931 0.9357 0 38.73 LAPEYEAAATR 2 619.0007 1235.9868 1235.5054 0.4814 0 39.66 DGEEAGAYDGPR 2 619.0112 1236.0078 1235.5054 0.5024 0 57.34 DGEEAGAYDGPR 2 790.7697 1579.5248 1578.8253 0.6995 0 48.58 EATNPPVIQEEKPK 2 840.8152 1679.6158 1679.7461 -0.1302 0 62.3 MDATANDVPSPYEVR Oxidation (M) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA-processing factor 31) Q8WWY3 PRP31_HUMAN (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined 5.63 55649 77 2 4.2 2 530.6522 1059.2898 1057.508 1.7819 0 51.33 IYEYVESR antigen NY-BR-99) - Homo sapiens (Human) 2 638.7472 1275.4798 1275.6857 -0.2058 0 62.38 IMGVAGGLTNLSK Oxidation (M) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1) (DGI) (Pemphigus 2246 Q02413 DSG1_HUMAN 4.9 114670 102 2 3.3 2 868.0952 1734.1758 1733.8407 0.3352 0 60.07 YVMGNNPADLLAVDSR foliaceus antigen) - Homo sapiens (Human) 3 763.9942 2288.9608 2288.1008 0.86 1 45.5 TMNNFLDREQYGQYALAVR 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein 1) (KCIP-1) (Protein 2306 P31946 1433B_HUMAN 4.76 28179 171 7 27.2 2 452.4581 902.9016 902.5073 0.3944 0 49.55 VISSIEQK 1054) - Homo sapiens (Human) 2 454.5136 907.0126 906.5174 0.4952 0 39.21 NLLSVAYK 2 515.5482 1029.0818 1030.4099 -1.3281 0 43.46 YDDMAAAMK Oxidation (M) 2 562.9702 1123.9258 1123.5444 0.3814 0 43.71 EMQPTHPIR Oxidation (M) 2 799.9421 1597.8696 1597.7332 0.1364 0 78.27 AVTEQGHELSNEER 2 1080.253 2158.4914 2158.0178 0.4736 0 78.89 QTTVSNSQQAYQEAFEISK 3 720.6575 2158.9507 2158.0178 0.9328 0 43.56 QTTVSNSQQAYQEAFEISK 14-3-3 protein gamma (Protein kinase C inhibitor protein 1) (KCIP-1) - Homo P61981 1433G_HUMAN 4.8 28456 67 4 15.8 2 452.4581 902.9016 902.5073 0.3944 0 49.55 VISSIEQK sapiens (Human) 2 454.5136 907.0126 906.5174 0.4952 0 39.21 NLLSVAYK 2 515.5482 1029.0818 1030.4099 -1.3281 0 43.46 YDDMAAAMK Oxidation (M) 3 526.8172 1577.4298 1576.7879 0.6419 2 35.84 TSADGNEKKIEMVR Q86YZ3 HORN_HUMAN Hornerin - Homo sapiens (Human) 10.05 283140 55 2 0.9 2 475.0521 948.0896 947.4209 0.6687 0 51.74 YGQHGSGSR 3 529.2598 1584.7576 1583.7077 1.0499 0 35.61 GPYESGSGHSSGLGHR Actin, aortic smooth muscle (Alpha-actin-2) (Cell growth-inhibiting 46 2322 P62736 ACTA_HUMAN 5.23 42381 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR protein) - Homo sapiens (Human) 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) P60709 ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin) - Homo sapiens (Human) 5.29 42052 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) P68032 ACTC_HUMAN Actin, alpha cardiac muscle 1 (Alpha-cardiac actin) - Homo sapiens (Human) 5.23 42334 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) P63261 ACTG_HUMAN Actin, cytoplasmic 2 (Gamma-actin) - Homo sapiens (Human) 5.31 42108 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) Actin, gamma-enteric smooth muscle (Smooth muscle gamma actin) (Gamma-2- P63267 ACTH_HUMAN 5.31 42249 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR actin) (Alpha-actin-3) - Homo sapiens (Human) 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) P68133 ACTS_HUMAN Actin, alpha skeletal muscle (Alpha-actin-1) - Homo sapiens (Human) 5.23 42366 89 2 5.6 2 488.5926 975.1706 975.441 -0.2704 0 42.9 AGFAGDDAPR 2 589.4706 1176.9266 1176.606 0.3206 0 45.91 EITALAPSTMK Oxidation (M) 2325 P08670 VIME_HUMAN Vimentin - Homo sapiens (Human) 5.06 53676 349 6 12.2 2 531.2427 1060.4708 1059.5197 0.9512 0 57.56 QVDQLTNDK 2 532.3387 1062.6628 1061.5175 1.1453 0 42.91 LQEEMLQR Oxidation (M) 2 547.9877 1093.9608 1092.52 1.4409 0 86.49 FADLSEAANR 2 560.0876 1118.1606 1117.5437 0.6169 0 59.4 LQDEIQNMK 2 585.8422 1169.6698 1168.7067 0.9632 0 60.24 ILLAELEQLK 2 662.7676 1323.5206 1322.6102 0.9104 0 47.52 EEAENTLQSFR Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin) - Homo sapiens 2341 P68871 HBB_HUMAN 6.75 16102 192 3 29.9 2 575.3032 1148.5918 1148.6666 -0.0747 0 43.22 VVAGVANALAHK (Human) 2 658.1602 1314.3058 1313.6575 0.6483 0 80.6 VNVDEVGGEALGR 2 1038.251 2074.4874 2073.9354 0.5521 0 67.71 FFESFGDLSTPDAVMGNPK Oxidation (M) Myosin regulatory light chain 2, smooth muscle isoform (Myosin RLC) (Myosin 2362 P24844 MLRN_HUMAN 4.8 19871 90 2 11.6 2 620.2317 1238.4488 1236.5557 1.8932 0 39.12 EAFNMIDQNR regulatory light chain 9) (LC20) - Homo sapiens (Human) 2 624.1472 1246.2798 1245.5778 0.702 0 54.13 GNFNYVEFTR Eukaryotic initiation factor 4A-II (EC 3.6.1.-) (ATP-dependent RNA helicase 2395 Q14240 IF4A2_HUMAN 5.33 46601 282 4 9.8 2 456.1611 910.3076 909.4378 0.8698 0 42.93 VFDMLNR Oxidation (M) eIF4A-2) (eIF4A-II) (eIF-4A-II) - Homo sapiens (Human) 2 480.0196 958.0246 956.5291 1.4956 0 61.22 ELAQQIQK 2 599.9872 1197.9598 1197.6717 0.2881 0 54.87 ETQALVLAPTR 2 697.7076 1393.4006 1393.6838 -0.2831 0 123.4 GYDVIAQAQSGTGK Q13148 TADBP_HUMAN TAR DNA-binding protein 43 (TDP-43) - Homo sapiens (Human) 5.85 45053 139 3 5.1 2 572.3112 1142.6078 1143.5448 -0.937 0 50.84 FTEYETQVK 2 577.7911 1153.5676 1152.4969 1.0708 0 45.87 MDETDASSAVK 2 649.3792 1296.7438 1296.5867 0.1571 1 45.48 KMDETDASSAVK Oxidation (M) Pigment -derived factor precursor (PEDF) (Serpin-F1) (EPC-1) - Homo P36955 PEDF_HUMAN 5.97 46484 71 2 4.3 2 489.3921 976.7696 976.5229 0.2467 0 36.39 SSFVAPLEK sapiens (Human) 2 513.5532 1025.0918 1024.5077 0.5842 0 34.81 LSYEGEVTK Dipeptidyl-peptidase 2 precursor (EC 3.4.14.2) (Dipeptidyl-peptidase II) (DPP II) 2449 Q9UHL4 DPP2_HUMAN (Dipeptidyl aminopeptidase II) (Quiescent cell proline dipeptidase) (Dipeptidyl 5.91 54749 103 3 6.5 2 509.1126 1016.2106 1015.4723 0.7383 0 37.89 APDPGFQER peptidase 7) - Homo sapiens (Human) 2 597.1677 1192.3208 1190.6044 1.7165 0 71.72 SLPFGAQSTQR 2 647.9882 1293.9618 1292.5885 1.3734 0 61.56 DVTADFEGQSPK Calreticulin precursor (CRP55) (Calregulin) (HACBP) (ERp60) (grp60) - Homo 2452 P27797 CALR_HUMAN 4.29 48283 339 8 16.5 1 737.372 736.3647 736.4119 -0.0472 0 37.65 FVLSSGK sapiens (Human) 2 488.1171 974.2196 974.4781 -0.2585 0 53.35 GLQTSQDAR 2 510.3381 1018.6616 1018.4818 0.1798 1 39.01 LKEEEEDK 2 565.7582 1129.5018 1129.4928 0.0091 1 48.18 FYGDEEKDK 2 574.4282 1146.8418 1146.655 0.1869 1 35.53 KVHVIFNYK 2 609.9471 1217.8796 1217.6 0.2796 1 40.94 DKGLQTSQDAR 2 706.6437 1411.2728 1409.6212 1.6517 0 48.42 EQFLDGDGWTSR 2 901.5977 1801.1808 1799.8326 1.3483 1 44.81 IKDPDASKPEDWDER ATP synthase subunit beta, mitochondrial precursor (EC 3.6.3.14) - Homo sapiens 2454 P06576 ATPB_HUMAN 5.26 56525 502 12 21.2 2 450.7091 899.4036 898.5124 0.8913 0 51.95 VLDSGAPIK (Human) 2 632.1067 1262.1988 1261.6336 0.5652 0 70.72 TIAMDGTEGLVR 2 640.3066 1278.5986 1277.6286 0.9701 0 58.66 TIAMDGTEGLVR Oxidation (M) 2 693.6122 1385.2098 1384.702 0.5078 0 54.36 IMNVIGEPIDER 2 703.8762 1405.7378 1405.6739 0.064 0 34.55 AHGGYSVFAGVGER 2 718.5262 1435.0378 1434.7467 0.2912 0 97.25 FTQAGSEVSALLGR 2 809.9106 1617.8066 1616.7981 1.0086 0 81.83 VALVYGQMNEPPGAR Oxidation (M) 2 826.4626 1650.9106 1649.9101 1.0006 0 71.25 LVLEVAQHLGESTVR 3 551.4291 1651.2655 1649.9101 1.3554 0 43.29 LVLEVAQHLGESTVR 2 1142.325 2282.6354 2281.0719 1.5636 0 40.57 IPSAVGYQPTLATDMGTMQER Oxidation (M) 3 761.9376 2282.791 2281.0719 1.7191 0 36.66 IPSAVGYQPTLATDMGTMQER Oxidation (M) 3 767.0758 2298.2056 2297.0668 1.1388 0 35.87 IPSAVGYQPTLATDMGTMQER 2 Oxidation (M) ATP synthase subunit beta, mitochondrial precursor (EC 3.6.3.14) - Homo sapiens 2455 P06576 ATPB_HUMAN 5.26 56525 368 8 15.9 2 450.4006 898.7866 898.5124 0.2743 0 60.1 VLDSGAPIK (Human) 2 488.3821 974.7496 974.5549 0.1947 0 49.97 IGLFGGAGVGK 2 545.0826 1088.1506 1087.6277 0.5229 0 36.79 VVDLLAPYAK 2 632.1827 1262.3508 1261.6336 0.7172 0 63.78 TIAMDGTEGLVR 2 640.1741 1278.3336 1277.6286 0.7051 0 48.86 TIAMDGTEGLVR Oxidation (M) 2 693.6627 1385.3108 1384.702 0.6088 0 49.75 IMNVIGEPIDER 2 810.1747 1618.3348 1616.7981 1.5368 0 48.06 VALVYGQMNEPPGAR Oxidation (M) 2 825.9117 1649.8088 1649.9101 -0.1012 0 59.45 LVLEVAQHLGESTVR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin 2463 Q969G3 SMCE1_HUMAN 4.85 46678 311 5 14.8 2 487.6981 973.3816 971.4785 1.9032 0 48.13 LGGNPGTNSR subfamily E member 1 (BRG1-associated factor 57) - Homo sapiens (Human) 2 553.5562 1105.0978 1103.5094 1.5884 0 56.22 AEAALEEESR 2 700.4836 1398.9526 1398.7103 0.2424 0 80.3 IAAEIAQAEEQAR 2 772.7692 1543.5238 1542.7202 0.8037 0 68.95 FLESTDSFNNELK 2 808.8771 1615.7396 1615.7689 -0.0293 0 60.45 SQSSIVPEEEQAANK P07437 TBB5_HUMAN Tubulin beta chain (Tubulin beta-5 chain) - Homo sapiens (Human) 4.78 50095 176 4 7.7 2 581.1337 1160.2528 1158.6219 1.6309 0 55.41 LAVNMVPFPR Oxidation (M) 2 651.6862 1301.3578 1300.6299 0.7279 0 71.35 ISVYYNEATGGK 2 724.1116 1446.2086 1445.682 0.5266 0 51.85 EVDEQMLNVQNK 2 731.9987 1461.9828 1461.6769 0.3059 0 51.42 EVDEQMLNVQNK Oxidation (M) 2470 P07437 TBB5_HUMAN Tubulin beta chain (Tubulin beta-5 chain) - Homo sapiens (Human) 4.78 50095 364 6 17.6 2 615.6191 1229.2236 1228.591 0.6326 0 66.41 ISEQFTAMFR 2 651.7416 1301.4686 1300.6299 0.8387 0 59.41 ISVYYNEATGGK 2 732.0621 1462.1096 1461.6769 0.4327 0 65.95 EVDEQMLNVQNK Oxidation (M) 2 817.1157 1632.2168 1630.8236 1.3932 0 78.57 AILVDLEPGTMDSVR Oxidation (M) 3 554.2332 1659.6778 1658.8879 0.7898 0 40.88 ALTVPELTQQVFDAK 2 849.0256 1696.0366 1695.8257 0.211 0 52.79 NSSYFVEWIPNNVK P68371 TBB2C_HUMAN Tubulin beta-2C chain (Tubulin beta-2 chain) - Homo sapiens (Human) 4.79 50255 225 4 10.8 2 615.6191 1229.2236 1228.591 0.6326 0 66.41 ISEQFTAMFR 2 665.2202 1328.4258 1327.6408 0.785 0 39.38 INVYYNEATGGK 2 732.0621 1462.1096 1461.6769 0.4327 0 65.95 EVDEQMLNVQNK Oxidation (M) 2 849.0256 1696.0366 1695.8257 0.211 0 52.79 NSSYFVEWIPNNVK 2471 Q13885 TBB2A_HUMAN Tubulin beta-2A chain - Homo sapiens (Human) 4.78 50274 463 17 20.2 2 527.9261 1053.8376 1052.6019 1.2358 0 43.93 YLTVAAIFR 2 566.2361 1130.4576 1129.588 0.8697 0 35.79 FPGQLNADLR 2 566.5281 1131.0416 1129.588 1.4537 0 57.57 FPGQLNADLR 2 566.7797 1131.5448 1129.588 1.9569 0 50.35 FPGQLNADLR 2 580.6367 1159.2588 1158.6219 0.6369 0 65 LAVNMVPFPR Oxidation (M) 2 581.1147 1160.2148 1158.6219 1.5929 0 38.49 LAVNMVPFPR Oxidation (M) 2 581.1896 1160.3646 1158.6219 1.7427 0 45.62 LAVNMVPFPR Oxidation (M) 2 615.2317 1228.4488 1228.591 -0.1422 0 38.57 ISEQFTAMFR 2 623.5952 1245.1758 1244.586 0.5899 0 60.78 ISEQFTAMFR Oxidation (M) 2 623.8072 1245.5998 1244.586 1.0139 0 59.33 ISEQFTAMFR Oxidation (M) 2 678.8102 1355.6058 1354.6517 0.9542 0 63.37 INVYYNEAAGNK 2 678.8851 1355.7556 1354.6517 1.104 0 62.28 INVYYNEAAGNK 2 692.6031 1383.1916 1382.6574 0.5342 0 67.84 IMNTFSVMPSPK 2 Oxidation (M) 2 724.0052 1445.9958 1445.682 0.3138 0 57.52 EVDEQMLNVQNK 2 732.2427 1462.4708 1461.6769 0.7939 0 60.98 EVDEQMLNVQNK Oxidation (M) 2 732.6437 1463.2728 1461.6769 1.5959 0 65.47 EVDEQMLNVQNK Oxidation (M) 2 816.7286 1631.4426 1630.8236 0.619 0 43.71 AILVDLEPGTMDSVR Oxidation (M) P07437 TBB5_HUMAN Tubulin beta chain (Tubulin beta-5 chain) - Homo sapiens (Human) 4.78 50095 416 16 17.6 2 521.1252 1040.2358 1038.5862 1.6496 0 40.83 YLTVAAVFR 2 566.2361 1130.4576 1129.588 0.8697 0 35.79 FPGQLNADLR 2 566.5281 1131.0416 1129.588 1.4537 0 57.57 FPGQLNADLR 2 566.7797 1131.5448 1129.588 1.9569 0 50.35 FPGQLNADLR 2 580.6367 1159.2588 1158.6219 0.6369 0 65 LAVNMVPFPR Oxidation (M) 2 581.1147 1160.2148 1158.6219 1.5929 0 38.49 LAVNMVPFPR Oxidation (M) 2 581.1896 1160.3646 1158.6219 1.7427 0 45.62 LAVNMVPFPR Oxidation (M) 2 615.2317 1228.4488 1228.591 -0.1422 0 38.57 ISEQFTAMFR 2 623.5952 1245.1758 1244.586 0.5899 0 60.78 ISEQFTAMFR Oxidation (M) 2 623.8072 1245.5998 1244.586 1.0139 0 59.33 ISEQFTAMFR Oxidation (M) 2 651.6707 1301.3268 1300.6299 0.6969 0 83.08 ISVYYNEATGGK 2 651.7021 1301.3896 1300.6299 0.7597 0 40.91 ISVYYNEATGGK 2 724.0052 1445.9958 1445.682 0.3138 0 57.52 EVDEQMLNVQNK 2 732.2427 1462.4708 1461.6769 0.7939 0 60.98 EVDEQMLNVQNK Oxidation (M) 2 732.6437 1463.2728 1461.6769 1.5959 0 65.47 EVDEQMLNVQNK Oxidation (M) 2 816.7286 1631.4426 1630.8236 0.619 0 43.71 AILVDLEPGTMDSVR Oxidation (M) P68371 TBB2C_HUMAN Tubulin beta-2C chain (Tubulin beta-2 chain) - Homo sapiens (Human) 4.79 50255 355 14 14.2 2 521.1252 1040.2358 1038.5862 1.6496 0 40.83 YLTVAAVFR 2 566.2361 1130.4576 1129.588 0.8697 0 35.79 FPGQLNADLR 2 566.5281 1131.0416 1129.588 1.4537 0 57.57 FPGQLNADLR 2 566.7797 1131.5448 1129.588 1.9569 0 50.35 FPGQLNADLR 2 580.6367 1159.2588 1158.6219 0.6369 0 65 LAVNMVPFPR Oxidation (M) 2 581.1147 1160.2148 1158.6219 1.5929 0 38.49 LAVNMVPFPR Oxidation (M) 2 581.1896 1160.3646 1158.6219 1.7427 0 45.62 LAVNMVPFPR Oxidation (M) 2 615.2317 1228.4488 1228.591 -0.1422 0 38.57 ISEQFTAMFR 2 623.5952 1245.1758 1244.586 0.5899 0 60.78 ISEQFTAMFR Oxidation (M) 2 623.8072 1245.5998 1244.586 1.0139 0 59.33 ISEQFTAMFR Oxidation (M) 2 665.1127 1328.2108 1327.6408 0.57 0 65.79 INVYYNEATGGK 2 724.0052 1445.9958 1445.682 0.3138 0 57.52 EVDEQMLNVQNK 2 732.2427 1462.4708 1461.6769 0.7939 0 60.98 EVDEQMLNVQNK Oxidation (M) 2 732.6437 1463.2728 1461.6769 1.5959 0 65.47 EVDEQMLNVQNK Oxidation (M) P04350 TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) - Homo sapiens (Human) 4.78 50010 329 12 12.8 2 521.1252 1040.2358 1038.5862 1.6496 0 40.83 YLTVAAVFR 2 566.2361 1130.4576 1129.588 0.8697 0 35.79 FPGQLNADLR 2 566.5281 1131.0416 1129.588 1.4537 0 57.57 FPGQLNADLR 2 566.7797 1131.5448 1129.588 1.9569 0 50.35 FPGQLNADLR 2 580.6367 1159.2588 1158.6219 0.6369 0 65 LAVNMVPFPR Oxidation (M) 2 581.1147 1160.2148 1158.6219 1.5929 0 38.49 LAVNMVPFPR Oxidation (M) 2 581.1896 1160.3646 1158.6219 1.7427 0 45.62 LAVNMVPFPR Oxidation (M) 2 615.2317 1228.4488 1228.591 -0.1422 0 38.57 ISEQFTAMFR 2 623.5952 1245.1758 1244.586 0.5899 0 60.78 ISEQFTAMFR Oxidation (M) 2 623.8072 1245.5998 1244.586 1.0139 0 59.33 ISEQFTAMFR Oxidation (M) 2 705.1661 1408.3176 1407.6552 0.6625 0 70.29 EVDEQMLSVQSK Oxidation (M) 3 705.1658 2112.4756 2113.9806 -1.505 2 37.99 GRMSMKEVDEQMLSVQSK 2 Oxidation (M) Hepatoma-derived growth factor (HDGF) (High-mobility group protein 1-like 2) 2478 P51858 HDGF_HUMAN 4.7 26886 159 4 8.8 2 523.1342 1044.2538 1043.5135 0.7404 0 65.61 AGDLLEDSPK (HMG-1L2) - Homo sapiens (Human) 2 552.0707 1102.1268 1101.5376 0.5893 0 61.23 IDEMPEAAVK 2 560.1882 1118.3618 1117.5325 0.8293 0 43.98 IDEMPEAAVK Oxidation (M) 2 600.9697 1199.9248 1199.6146 0.3103 1 35.01 RAGDLLEDSPK Hepatoma-derived growth factor (HDGF) (High-mobility group protein 1-like 2) 2479 P51858 HDGF_HUMAN 4.7 26886 84 3 8.8 2 545.0751 1088.1356 1087.4894 0.6462 0 34.99 NSTPSEPGSGR (HMG-1L2) - Homo sapiens (Human) 2 552.2527 1102.4908 1101.5376 0.9533 0 45.97 IDEMPEAAVK 2 560.5797 1119.1448 1117.5325 1.6123 0 49.09 IDEMPEAAVK Oxidation (M) Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Alpha-2-Z-globulin) (Ba-alpha-2- 2591 P02765 FETUA_HUMAN glycoprotein) [Contains: Alpha-2-HS-glycoprotein chain A; Alpha-2-HS- 5.43 40098 115 2 8.2 2 599.1116 1196.2086 1195.6197 0.589 0 60.01 HTLNQIDEVK glycoprotein chain B] - Homo sapiens (Human) 3 700.3095 2097.9067 2096.011 1.8957 0 54.69 HTFMGVVSLGSPSGEVSHPR Oxidation (M) 2 655.1002 1308.1858 1307.6258 0.56 0 40.73 NFIAQGPYENR 2631 P68371 TBB2C_HUMAN Tubulin beta-2C chain (Tubulin beta-2 chain) - Homo sapiens (Human) 4.79 50255 136 3 7 2 521.0967 1040.1788 1038.5862 1.5926 0 35.59 YLTVAAVFR 2 623.8867 1245.7588 1244.586 1.1729 0 54.55 ISEQFTAMFR Oxidation (M) 2 732.2131 1462.4116 1461.6769 0.7347 0 45.94 EVDEQMLNVQNK Oxidation (M) P07437 TBB5_HUMAN Tubulin beta chain (Tubulin beta-5 chain) - Homo sapiens (Human) 4.78 50095 136 3 7 2 521.0967 1040.1788 1038.5862 1.5926 0 35.59 YLTVAAVFR 2 623.8867 1245.7588 1244.586 1.1729 0 54.55 ISEQFTAMFR Oxidation (M) 2 732.2131 1462.4116 1461.6769 0.7347 0 45.94 EVDEQMLNVQNK Oxidation (M) Serum amyloid P-component precursor (SAP) (9.5S alpha-1-glycoprotein) 2647 P02743 SAMP_HUMAN 6.1 25485 237 4 18.4 2 497.2716 992.5286 992.5178 0.0108 0 50.16 DNELLVYK [Contains: Serum amyloid P-component(1-203)] - Homo sapiens (Human) 2 578.7231 1155.4316 1155.5924 -0.1608 0 68.03 VGEYSLYIGR 2 584.0251 1166.0356 1165.5768 0.4589 0 58.68 QGYFVEAQPK 2 697.9152 1393.8158 1392.6885 1.1273 0 63.1 IVLGQEQDSYGGK 2682 P08670 VIME_HUMAN Vimentin - Homo sapiens (Human) 5.06 53676 146 4 7.5 2 560.3722 1118.7298 1117.5437 1.1861 0 47.88 LQDEIQNMK 2 648.0927 1294.1708 1294.6591 -0.4882 0 34.42 MALDIEIATYR 2 656.5646 1311.1146 1310.654 0.4606 0 66.62 MALDIEIATYR Oxidation (M) 2 835.4332 1668.8518 1667.8366 1.0152 0 37.88 ETNLDSLPLVDTHSK 2722 P20700 LMNB1_HUMAN Lamin-B1 - Homo sapiens (Human) 5.11 66653 484 8 15.9 2 523.7856 1045.5566 1044.5451 1.0115 0 45.68 DAALATALGDK 2 543.2172 1084.4198 1083.5495 0.8704 0 46.15 LAQALHEMR Oxidation (M) 2 586.2626 1170.5106 1170.6496 -0.1389 0 67.92 IQELEDLLAK 2 626.6097 1251.2048 1250.6142 0.5906 0 59.96 ALYETELADAR 2 667.6932 1333.3718 1333.5899 -0.218 0 53.46 NQNSWGTGEDVK 2 708.7991 1415.5836 1415.5874 -0.0038 0 65.62 SMYEEEINETR Oxidation (M) 2 724.0327 1446.0508 1445.7725 0.2783 0 68.65 IESLSSQLSNLQK 2 909.5566 1817.0986 1816.9166 0.182 0 91.59 SLETENSALQLQVTER 2789 P00441 SODC_HUMAN Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) - Homo sapiens (Human) 5.7 16154 116 4 13 2 751.3221 1500.6296 1500.7573 -0.1276 0 50.74 GDGPVQGIINFEQK 2 751.5337 1501.0528 1500.7573 0.2956 0 61.03 GDGPVQGIINFEQK 3 501.4059 1501.1959 1500.7573 0.4386 0 46 GDGPVQGIINFEQK 2 751.9861 1501.9576 1500.7573 1.2004 0 83.21 GDGPVQGIINFEQK Calreticulin precursor (CRP55) (Calregulin) (HACBP) (ERp60) (grp60) - Homo 2827 P27797 CALR_HUMAN 4.29 48283 247 6 12 1 700.438 699.4307 699.4279 0.0028 0 49.56 NVLINK sapiens (Human) 2 524.3342 1046.6538 1046.4628 0.191 1 37.85 DKQDEEQR 2 565.7952 1129.5758 1129.4928 0.0831 1 57.04 FYGDEEKDK 2 705.9457 1409.8768 1409.6212 0.2557 0 64.61 EQFLDGDGWTSR 3 601.1868 1800.5386 1799.8326 0.706 1 36.74 IKDPDASKPEDWDER 2 901.5482 1801.0818 1799.8326 1.2493 1 40.84 IKDPDASKPEDWDER 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein 1) (KCIP-1) (Protein 2860 P31946 1433B_HUMAN 4.76 28179 359 12 25.2 1 703.259 702.2517 702.3912 -0.1395 0 35.16 SELVQK 1054) - Homo sapiens (Human) 2 452.2486 902.4826 902.5073 -0.0246 0 72.41 VISSIEQK 2 452.7106 903.4066 902.5073 0.8994 0 60.08 VISSIEQK 2 467.0986 932.1826 931.4222 0.7605 1 38.7 MKGDYFR Oxidation (M) 2 508.1731 1014.3316 1014.415 -0.0834 0 46.94 YDDMAAAMK 2 516.4972 1030.9798 1030.4099 0.5699 0 45.12 YDDMAAAMK Oxidation (M) 2 516.5986 1031.1826 1030.4099 0.7727 0 55.42 YDDMAAAMK Oxidation (M) 2 524.1002 1046.1858 1046.4049 -0.219 0 54.47 YDDMAAAMK 2 Oxidation (M) 2 524.2991 1046.5836 1046.4049 0.1788 0 52.84 YDDMAAAMK 2 Oxidation (M) 2 563.1537 1124.2928 1123.5444 0.7484 0 46.16 EMQPTHPIR Oxidation (M) 2 592.1266 1182.2386 1181.5564 0.6822 0 70.58 YLSEVASGDNK 2 681.0687 1360.1228 1359.7034 0.4194 0 48.55 YLIPNATQPESK SH3 domain GRB2-like protein B1 (EC 2.3.1.-) (Endophilin-B1) (Bax-interacting 2880 Q9Y371 SHLB1_HUMAN 5.78 41056 178 7 17.5 2 451.6076 901.2006 900.5029 0.6978 1 37.14 RLDLDAAK factor 1) (Bif-1) - Homo sapiens (Human) 2 476.1221 950.2296 950.4709 -0.2413 0 50.38 AVQFTEEK 2 482.0881 962.1616 961.4465 0.7152 0 44.23 NSSEQELR 2 498.6476 995.2806 994.472 0.8087 0 56.51 ITQSEFDR 2 529.0381 1056.0616 1055.5175 0.5441 0 42.11 IEEFVYEK 2 561.5042 1120.9938 1120.5877 0.4062 0 99.51 LAADAGTFLSR 2 740.6481 1479.2816 1478.7841 0.4975 0 65.13 QTEVLLQPNPNAR Splicing factor 3A subunit 3 (Spliceosome-associated protein 61) (SAP 61) 2886 Q12874 SF3A3_HUMAN 5.27 59154 120 2 4 2 493.0561 984.0976 983.4421 0.6556 0 47.27 DQINSDHR (SF3a60) - Homo sapiens (Human) 2 656.5077 1311.0008 1309.6765 1.3243 0 72.73 SLESLDTSLFAK Hepatoma-derived growth factor (HDGF) (High-mobility group protein 1-like 2) 2891 P51858 HDGF_HUMAN 4.7 26886 107 2 7.9 2 478.4416 954.8686 954.4407 0.428 0 65.48 ASGYQSSQK (HMG-1L2) - Homo sapiens (Human) 2 560.2487 1118.4828 1117.5325 0.9503 0 45.03 IDEMPEAAVK Oxidation (M) Hepatoma-derived growth factor (HDGF) (High-mobility group protein 1-like 2) 2892 P51858 HDGF_HUMAN 4.7 26886 76 2 8.3 2 560.2482 1118.4818 1117.5325 0.9493 0 37.77 IDEMPEAAVK Oxidation (M) (HMG-1L2) - Homo sapiens (Human) 2 566.8116 1131.6086 1130.4727 1.1359 0 37.8 EAENPEGEEK Complement C3 precursor [Contains: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha~ chain; Complement C3c 2917 P01024 CO3_HUMAN 6.02 188569 151 3 2.2 2 467.0241 932.0336 933.5066 -1.4729 1 34.56 MNKTVAVR Oxidation (M) alpha~ chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragmen 2 645.7997 1289.5848 1288.6008 0.9841 0 73.84 SGSDEVQVGQQR 3 615.3178 1842.9316 1840.9836 1.948 0 46.01 VHQYFNVELIQPGAVK Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response mediator 2932 Q16555 DPYL2_HUMAN 5.95 62711 229 5 8.9 1 675.302 674.2947 674.3599 -0.0652 0 34.01 ANITSLG protein 2) (CRMP-2) (N2A3) - Homo sapiens (Human) 2 455.4526 908.8906 907.4916 1.3991 0 35.75 VFNLYPR 2 517.2607 1032.5068 1030.5407 1.9662 0 64.21 SSAEVIAQAR 2 542.8007 1083.5868 1083.6288 -0.042 0 48 GSPLVVISQGK 3 561.8855 1682.6347 1681.8635 0.7711 0 46.89 IVLEDGTLHVTEGSGR Sorting nexin-18 (Sorting nexin-associated Golgi protein 1) (SH3 and PX domain- Q96RF0 SNX18_HUMAN 5.43 69350 209 4 8.3 2 508.0461 1014.0776 1013.4706 0.6071 0 35.2 FEEDFISK containing protein 3B) - Homo sapiens (Human) 2 551.5687 1101.1228 1100.5462 0.5767 0 60.64 SENPGEISLR 2 737.6072 1473.1998 1472.7008 0.499 0 75.55 APEPGPAGDGGPGAPAR 3 650.6172 1948.8298 1947.8745 0.9553 0 37.2 MDDSALQLNHTANEFAR Oxidation (M) P40222 TXLNA_HUMAN Alpha-taxilin - Homo sapiens (Human) 6.15 62195 200 4 6.8 2 532.7892 1063.5638 1062.5709 0.9929 0 44.02 LIEQYELR 2 553.5092 1105.0038 1103.5645 1.4394 0 46.58 LQQAQEMLK Oxidation (M) 2 579.6682 1157.3218 1156.6088 0.7131 0 52.47 DLQQQLVDAK 2 622.7001 1243.3856 1241.5928 1.7928 0 64.49 FEEFQNTLSK Phosphoglucomutase-2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) - Homo Q96G03 PGM2_HUMAN 6.28 68754 166 3 5.4 2 600.0016 1197.9886 1197.599 0.3897 0 62.09 IVLANDPDADR sapiens (Human) 2 630.6672 1259.3198 1258.6306 0.6893 0 46.6 LDQETAQWLR 2 667.7587 1333.5028 1333.6071 -0.1043 0 56.87 DTYMLSSTVSSK Oxidation (M) Q8TAT6 NPL4_HUMAN Nuclear protein localization protein 4 homolog (Protein NPL4) - Homo sapiens 5.94 69046 157 3 5.4 2 523.0432 1044.0718 1043.5499 0.522 0 51.1 AEVVDEIAAK 2 560.1791 1118.3436 1117.5404 0.8033 0 39.31 NEELAQTWK 2 839.5591 1677.1036 1676.757 0.3467 0 72.44 ESSSEQYVPDVFYK 2957 Q03252 LMNB2_HUMAN Lamin-B2 - Homo sapiens (Human) 5.29 67762 723 12 21 2 531.2997 1060.5848 1059.5673 1.0176 1 36.86 RLVEVDSSR 2 568.0667 1134.1188 1133.5022 0.6166 0 40.04 ELEEAMAGER 2 576.1166 1150.2186 1149.4972 0.7215 0 56.74 ELEEAMAGER Oxidation (M) 2 596.9526 1191.8906 1190.6143 1.2764 1 45.72 ISEKEEVTTR 2 612.0427 1222.0708 1221.6241 0.4468 0 58.58 LELEQTYQAK 2 617.4322 1232.8498 1231.6296 1.2203 0 91.91 SEVELAAALSDK 2 619.5267 1237.0388 1236.5986 0.4403 0 71.42 ALYESELADAR 2 635.0397 1268.0648 1267.6004 0.4644 0 69.75 ATSSSSGSLSATGR 2 640.1187 1278.2228 1277.6503 0.5725 0 62.42 QVLEGEEIAYK 2 650.4322 1298.8498 1297.5687 1.2811 0 55.11 GQSSWGTGESFR 2 734.1957 1466.3768 1464.7824 1.5945 0 81.27 LESLSYQLSGLQK 2 752.6027 1503.1908 1502.7399 0.451 0 100.36 TVLVNADGEEVAMR Vacuolar ATP synthase subunit B, brain isoform (EC 3.6.3.14) (V-ATPase 2962 P21281 VATB2_HUMAN subunit B 2) (Vacuolar proton pump subunit B 2) (Endomembrane proton pump 5.57 56807 93 2 3.9 2 469.2426 936.4706 936.4335 0.0372 0 37.15 SAIGEGMTR Oxidation (M) 58 kDa subunit) (HO57) - Homo sapiens (Human) 2 546.3267 1090.6388 1089.5666 1.0722 0 55.68 SGQVLEVSGSK 3 758.5709 2272.6909 2272.0681 0.6227 0 76.78 GGETSEMYLIQPDSSVKPYR Oxidation (M) 2984 P28676 GRAN_HUMAN Grancalcin - Homo sapiens (Human) 5.02 24223 95 2 8.8 2 497.5231 993.0316 993.4987 -0.4671 0 52.35 IMIAMLDR 2 Oxidation (M) 2 601.1082 1200.2018 1199.7125 0.4893 0 45.85 LSPQTLTTIVK Macrophage-capping protein (Actin-regulatory protein CAP-G) - Homo sapiens 3058 P40121 CAPG_HUMAN 5.88 38779 123 2 6.9 2 641.0931 1280.1716 1279.6078 0.5638 0 71.83 VSDATGQMNLTK Oxidation (M) (Human) 2 659.5361 1317.0576 1316.5732 0.4845 0 51.51 EGNPEEDLTADK 3059 P02675 FIBB_HUMAN Fibrinogen beta chain precursor [Contains: Fibrinopeptide B] - Homo sapiens 8.54 56577 77 2 6.3 2 620.5417 1239.0688 1238.5105 0.5584 0 34.6 EDGGGWWYNR 3 801.5855 2401.7347 2400.1631 1.5716 1 45.89 KGGETSEMYLIQPDSSVKPYR Oxidation (M) Ubiquinol-cytochrome-c reductase complex core protein 1, mitochondrial precursor 3063 NP003356 UQCR1_HUMAN 5.94 53297 107 2 4 2 529.6887 1057.3628 1057.5768 -0.2139 0 61.68 IAEVDASVVR (EC 1.10.2.2) (Core I protein) - Homo sapiens (Human) 2 551.2692 1100.5238 1099.5662 0.9577 0 50.11 IPLAEWESR

*Spot numbers refer to Fig.1C and Fig.2 †Accession numbers for the proteins were derived from SWISS-PROT and the National Center for Biotechnology Information nonredundant databases. ‡Theoretical isoelectric point and molecular weight obtained from Swiss-Prot. §Mascot score for the identified proteins based on the peptide ion score.