DOCSLIB.ORG

Functionalized BODIPY Dyes for Near-Infrared Emission Of

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Functionalized BODIPY Dyes for Near-Infrared Emission Of Eastern Illinois University The Keep Masters Theses Student Theses & Publications 2017 Functionalized BODIPY Dyes for Near-Infrared Emission of Lanthanide Complexes Rukshani Wickrama Arachchi Eastern Illinois University This research is a product of the graduate program in Chemistry at Eastern Illinois University. Find out more about the program. Recommended Citation Arachchi, Rukshani Wickrama, "Functionalized BODIPY Dyes for Near-Infrared Emission of Lanthanide Complexes" (2017). Masters Theses. 2911. https://thekeep.eiu.edu/theses/2911 This is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. The GraduateSchool .EASTEH.N ILLINOISUNIVERSITY­ � Tbesis Maintenance and Reproduction Certificate FOR: Graduate Candidates Completing Theses in Partial Fulfillment of the Degree Graduate Faculty Advisors Directing the Theses RE: Preservation, Reproduction, and Distribution of Thesis Research Preserving, reproducing, and distributing thesis research is an important part of Booth Library's responsibility to provide access to scholarship. In order to further this goal, Booth Library makes all graduate theses completed as part of a degree program at EasternIllinois University available for personal study, research, and other not-for-profit educational purposes. Under 17 U.S.C. § 108, the library may reproduce and distribute a copy without infringing on copyright; however, professional courtesy dictates that pennission be requested from the author before doing so. Your signatures affirm the following: • The graduate candidate is the author of this thesis. • The graduate candidate retains the copyright and intellectual property rights associated with the original research, creative activity, and intellectual or artistic content of the thesis. • The graduate candidate certifies her/his compliance with federal copyright law (Title 17 of the U. S. Code) and her/his right to authorize reproduction and distribution of all copyrighted materials included in this thesis. • The graduate candidate in consultation with the faculty advisor grants Booth Library the non­ exclusive, perpetual right to make copies of the thesis freely and publicly available without restriction, by means of any current or successive technology, including by not limited to photocopying, microfilm, digitization, or internet. • The graduate candidate acknowledges that by depositing her/his thesis with Booth Library, her/his work is available for viewing by the public and may be borrowed through the library's circulation and interlibrary loan departments, or accessed electronically. • The graduate candidate waives the confidentiality provisions of the Family Educational Rights and Privacy Act (FERPA) (20 U. S. C. § l 232g; 34 CFR Part 99) with respect to the contents of the thesis and with respect to information concerning authorship of the thesis, including name and status as a student at Eastern Illinois University. I have conferred with my graduate faculty advisor. My signature below indicates that I have read and agree with the above statements, and hereby give my permission to allow Booth Library to reproduce and distribute my thesis. My adviser's signature indicates concurrence to reproduce and distribute the thesis. Graduate Candidate Signature F')l'l\'l)y Adviser Signature Printed Name Printed Name fl1a..skr DP gc.�Vlc. CkHYl'�H; in I Graduate Degree Program Date Please submit in duplicate. BODIPY Functionalized dyes for Near-infrared Emission of Lanthanide Complexes (TITLE) BY Rukshani Wickrama Arachchi THESIS SUBMITIED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master of Science in Chemistry IN THE GRADUATE SCHOOL, EASTERN ILLINOIS UNIVERSITY CHARLESTON, ILLINOIS 2017 YEAR I HEREBY RECOMMEND THAT THIS THESIS BE ACCEPTED AS FULFILLING THIS PART OF THE GRADUATE DEGREE CITED ABOVE 7/t11/� l}'ESISCOMMITTEE CHAIR DATE DEPARTMENT/SCHOOL CHAIR DATE OR CHAIR'S DESIGNEE THESIS COMMITTEE MEMBER 3iJJDATE /J7- THESIS COMMlfTEE MEMBER DATE 10/11 THESIS COMMITTEE MEMBER DATE THESIS COMMITTEE MEMBER DATE Functionalized BODIPY Dyes for Near-infrared Emission of Lanthanide Complexes Rukshani Wickrama Arachchi Research Advisor: Dr. Hongshan He Eastern Illinois University Chemistry Department TABLE OF CONTENTS TABLE OF CONTENTS .................................... ................... ............... ...i ABBREVIATIONS ............................................................................. vi ABSTRACT .......................................................................................vii ACKNOWLEDGEMENTS .................................................... ...... .... .....vii i LIST OF FIGURES . ................. ............................ .... .. ....... ..........ix LIST OF TABLES .......... .......... ...................... .... ............... .....xiv CHAPTER 1 INTRODUCTION 1 1.1. Overview 2 1.2. Luminescence 3 1.2.1. Fluorescence 1.2.1.1. Light-Matter Interaction 3 1.2.1.2. Emission Process 4 1.2.1.3. Excitation Spectrum 5 1.2.1.4. Emission Sp ectrum 5 1.2.1.5. Fluorescence Quantum Efficiency 7 1. 2.1. 6. Lifetime of Excited State 8 1.2. 1. 7. Factors Affecting fo r the Fluorescence Intensity 8 1.2.1. 8. limitations of Fluorescence 9 10 1.2.2. Phosphorescence 1 1.2.3. Fluorophores for Medical Diagnosis I 15 1.3. Fundamentals of Lanthaoides 16 1.3.1. Physical Properties l.3.2. Chemical Properties 16 1.3.3. Formation of Complexes 18 1.4. NIR Emitting Lanthanide Complexes 21 1.4.1. NIR Emission 21 1.4. 1. l. lanthanide NIR Emission 21 1.4.1.2. Energy Transfer Mechanism in lanthanide Organic Complex 23 1.4.2. Lanthanide Complexes 24 1.4.2.1. DOTA Complexes 24 1.4.2.2. Porphyrin Complexes 28 1.4.2.3. Phenanthroline Complexes 31 1.4.2.4. BOD/P Y Based Lanthanide Complexes 34 1.4.3. Applications of NIR Emitting Lanthanides 38 1.5. Motivation 41 1.6. Objectives 42 43 CHAPTER 2 SYNTHESIS & MEASUREMENTS 43 2.1. General 43 2.1.1. Materials 44 2.1.2. Instruments 45 2.2. Synthesis 2.2.1. Project 1 Synthetic Route 45 2.2.J. 1. Synthesis of RHl 46 2.2.1.2. Synthesis of RH2 47 2.2.1.3. Synthesis of RH3 48 ii 2.2. 1.4. Synthesis of RH4 49 2.2.1.5. Synthesis of RH5 50 2.2.J.6. Synthesis of RH6 51 2.2.1.7. Synthesis ofRH 7 52 2.2. 1.8. Synthesis of RHB 53 2.2. 1.9. Synthesis of RH9 54 2.2.2. Project 2 Synthetic Route 55 2.2.2.1. Synthesis of RHJO 56 2.2.2.2. Synthesis of RHII 57 2.2.2.3. Synthesis of RHI 2 58 2.2.2.4. Synthesis of RHl3 59 2.2.2.5. Synthesis of RHl4 60 2.2.2.6. Synthesis of Complex 1 61 2.2.2. 7. Synthesis of Complex 2 62 2.3. PhotophysicaJ Measurements 62 2.3.1. UV-VIS Absorption Spectra in Solutions 62 2.3.2. Fluorescence Spectra 63 2.3.2. 1. Excit ation and Emis sion Spect ra 63 2.3.2.2. Qu antum Yield Measu rements 64 2.3.3. Lifetime Measurements 65 2.3.3.J. Lifeti me Measu rement inthe Visib le Regio n 65 2.3.3.2. Lifetime Measu rement inthe NJR Region 65 2.3.4. Spectroscopic Titration 65 iii CHAPTER 3 RES UL TS AND DISCUSSION 67 3.1. Characterization 67 3.1.1. NMR Spectroscopy 67 3. 1.1.1. 1HNMR of Compound RH/ 67 3.1.1.2. 1HNMR of Compound RH2 68 3.1.1.3. 1HNMR of Compound RH3 69 3. 1. 1.4. 1HNMR of Compound RH4 70 3.1.1.5. 1H NM R of Compound RH5 71 3. 1. 1.6. 1HNMR of Compound RH6 72 3. 1. 1.7. 1HNMR of Compound RH7 73 3. 1.1.8. 1HNMR of Compound RH8 74 3. 1.1.9. 1HNMR of Compound RH9 75 3. 1.1.10. 1HNMR of Compound RHJO 76 3. 1.1.11. 1HNMR of Compound RH/ 1 77 3. 1.1. 12. 1HNM R of Compound RH12 78 3. 1. 1.13. 1HNMR o/Compound RHJ3 79 3. 1. 1. 14. 1HNM R of Compound RH14 80 3.1.2. X-Ray Crystallography 82 3.2. Photophysical Properties 89 3.2.1. Photophysical Properties of Ligands 89 3.2.1.1. Absorption Data 89 3.2.1.2. Fluorescence Data 89 3.2.1.3. Quantum Yield Measurements 90 iv 3.2. 1.4. lifetime Measurements 98 3.2.2. Photophysical Properties of Lanthanide Complexes 99 3.2.2.1. Interaction of RH12 with [Yb{TPP)(OAc)(MeOH)2] in CH2Cli 100 (formation of complex 1) 3.2.2.2. Interaction of RHJ4 with [Yb{TPP)(OAc)(MeOH)2] in CH2C'2 101 (formation of complex 2) 3.2.2.3. Spectroscopic Titrations with RH12 and RH14 Ligands 102 3.2.2.4. Lifetime at NIR Region 105 CHAPTER 4 CONCLUSION 107 REFERENCES 109 APPENDICES 118 v ABBREVIATIONS I. BODIPY - boron-dipyrromethene 2. NIR - near-infrared 3. NMR-nuclear magnetic resonance 4. TMS - tetramethylsilane 5. DOTA -1,4,7,10-tetraazacyclododecane- I,4,7, I O-tetraacetic acid 6. DTPA - diethylenetriaminepentaacetic acid 7. TFA - trifluoroacetic acid 8. Ln - lanthanide 9. TCSCT - time-correlated single photon counting technique 10. CAFS - chemoselective alteration of fluorophore scaffolds 11. TRL - time-resolved luminescent 12. TRLM - time resolved luminescence microscopy 13. MRI - magnetic resonance imaging 14. PET - photoinduced electron transfer 15. LLBs - lanthanide luminescent bioprobes 16. TPP - tetraphenylporphyrin 17. HMRG - hydroxymethyl rhodamine green 18. TMOS - tetramethoxysilane 19. Por - Porphyrin vi ABSTRACT For many decades, fluorophores have been used to investigate natural systems, but autofluorescence and photobleaching diminish the detection capacity. Recently, BODIPY based lanthanide complexes have been synthesized and their photophysical properties have been investigated. These complexes exhibit higher emission efficienciesat NIR region with longer NIR lifetimes upon exciting at longer wavelength. In this study, two BODIPY based lanthanide complexes were synthesized and their photophysical properties were evaluated. BODIPY based ligands were synthesized with phenanthroline as the ligand binding group. These ligands exhibit strong absorption at 527 nm and 532 nm, fluorescence at 540 nm and 548 nm with 0.55 (±0.0l) and 0.78 (±0.06) quantum yields.
Load more

Recommended publications
  • Real-Time Monitoring of Newly Acidified Organelles During Autophagy Enabled by Reaction-Based BODIPY Dyes
    ARTICLE https://doi.org/10.1038/s42003-019-0682-1 OPEN Real-time monitoring of newly acidified organelles during autophagy enabled by reaction-based BODIPY dyes Hanzhuang Liu 1,5, Wenting Song 1,5, Delia Gröninger2, Lei Zhang3, Yinghong Lu3, Kin Shing Chan 1,4, 1234567890():,; Zhikuan Zhou1, Knut Rurack 2* & Zhen Shen 1* Real-time monitoring of newly acidified organelles during autophagy in living cells is highly desirable for a better understanding of intracellular degradative processes. Herein, we describe a reaction-based boron dipyrromethene (BODIPY) dye containing strongly electron- withdrawing diethyl 2-cyanoacrylate groups at the α-positions. The probe exhibits intense red fluorescence in acidic organelles or the acidified cytosol while exhibiting negligible fluores- cence in other regions of the cell. The underlying mechanism is a nucleophilic reaction at the central meso-carbon of the indacene core, resulting in the loss of π-conjugation entailed by dramatic spectroscopic changes of more than 200 nm between its colorless, non-fluorescent leuco-BODIPY form and its red and brightly emitting form. The reversible transformation between red fluorescent BODIPY and leuco-BODIPY along with negligible cytotoxicity qua- lifies such dyes for rapid and direct intracellular lysosome imaging and cytosolic acidosis detection simultaneously without any washing step, enabling the real-time monitoring of newly acidified organelles during autophagy. 1 State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210046, China. 2 Chemical and Optical Sensing Division, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstätter-Str. 11, 12489 Berlin, Germany. 3 School of Chemical Engineering, Nanjing University of Science and Technology, Nanjing 225600, China.
    [Show full text]
  • 'A Fluorophore for the Future' Design and Synthesis of Novel BODIPY Derivatives
    ‘A Fluorophore for the Future’ Design and Synthesis of Novel BODIPY Derivatives A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Chemistry University of Canterbury 2017 Joseph Fee Bruce i “I have not failed. I have just found ten thousand things that do not work" Thomas Edison (1847-1931) ii Acknowledgements Firstly I would like to say thank you to everyone who has given me any wisdom, guidance, laughter or encouragement during my masters. Undeniably, both my moral and commitment have waivered at times as I have questioned myself, and through these interactions with all of you, I have persevered. My supervisor, Dr Chris Fitchett: Your sheer aura as a chemist and mentor has kept me in the lab when I needed to be and for the knowledge you have passed on to me both during my undergraduate studies and my thesis, thank you. To the rest of Team Fitchett; Sam, Will and Nic. You were there when I began my masters and you are still there as I finish. You’ve answered every annoying question I ever asked, provided me with all the practical skills I needed to get through my thesis and kept the office feeling alive the whole way, so cheers, you guys are the best. An extra thanks goes to all of the academic and technical staff within the chemistry department, in particular Dr’s Marie Squire and Matt Polson for their extra help with Mass-Spec and NMR and X-ray Crystallography, along with Wayne Mackay and Rob McCregor for their invaluable skills.
    [Show full text]
  • Design, Synthesis, and Evaluation of Innovative BODIPY-Peptidic Conjugates for Biological Application
    Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2017 Design, Synthesis, and Evaluation of Innovative BODIPY-Peptidic Conjugates for Biological Application Tyrslai Menyaee Williams Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Chemistry Commons Recommended Citation Williams, Tyrslai Menyaee, "Design, Synthesis, and Evaluation of Innovative BODIPY-Peptidic Conjugates for Biological Application" (2017). LSU Doctoral Dissertations. 4327. https://digitalcommons.lsu.edu/gradschool_dissertations/4327 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. DESIGN, SYNTHESIS, AND EVALUATION OF INNOVATIVE BODIPY-PEPTIDIC CONJUGATES FOR BIOLOGICAL APPLICATION A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Chemistry by Tyrslai Menyaeé Williams B.S., Southern University A&M College Baton Rouge, LA, 2011 August 2017 To my guardian angels Jency Williams, Libby Thompson, and Ann Glover we did it! To my heartbeats’ Marleigh Wright and Daviah Glover your unconditional love motivates me daily. ii ACKNOWLEDGEMENTS The impeccable journey of achieving my Doctorate of Philosophy in organic chemistry has been one of continuous learning and growth as a scientist and more importantly a woman. I would first like to thank God for being my light and salvation in everything that I do.
    [Show full text]
  • A BODIPY-Based Fluorescent Sensor for Amino Acids Bearing Thiol †
    Proceedings A BODIPY-Based Fluorescent Sensor for Amino Acids Bearing Thiol † Edurne Avellanal-Zaballa 1, Ágata Ramos-Torres 2, Alejandro Prieto-Castañeda 2, Fernando García-Garrido 2, Jorge Bañuelos 1,*, Antonia R. Agarrabeitia 2 and María J. Ortiz 2,* 1 Dpto Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Aptdo 644, 48080 Bilbao, Spain; [email protected] 2 Dpto Química Orgánica I, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040 Madrid, Spain; [email protected] (Á.R.-T.); [email protected] (A.P.-C.); [email protected] (F.G.-G.); [email protected] (A.R.A.) * Correspondence: [email protected] (J.B.); [email protected] (M.J.O.) † Presented at the 23rd International Electronic Conference on Synthetic Organic Chemistry, 15 November–15 December 2019; Available online: https://ecsoc-23.sciforum.net/. Published: 14 November 2019 Abstract: Herein, we describe the synthetic route to access a red-emitting BODIPY from its α- diformylated precursor. The photophysical signatures of this dye are sensitive to the presence of thiol-containing amino acids (like cysteine, homocysteine, and glutathione) in the surrounding environment. This sensor provides up to three detection channels to monitor and quantify these biomolecules, even at low concentrations (down to micromolar). Moreover, owing to the pronounced splitting of the spectral band profile induced by these amino acids, the detection can be visualized following just the evolution of the fluorescence color by the naked eye. Keywords: dye chemistry; fluorescent sensors; BODIPY; amino acids; Wittig reaction 1. Introduction The molecular design of fluorescent sensors to monitor and quantify the presence of biomolecules in physiological media is actually a hot research topic, owing to the key role of some of these biomolecules in biochemical events and diseases [1,2].
    [Show full text]
  • 1 University of Hull Dipyrrin Complexes and Their Uses
    UNIVERSITY OF HULL DIPYRRIN COMPLEXES AND THEIR USES AS SELF ASSEMBLING MATERIALS Being a thesis submitted for the Degree of Doctor of Philosophy in the University of Hull By Michael Benstead, MChem(hons) December 2010 1 Acknowledgements Firstly, my thanks go to my supervisors Ross Boyle and Georg Mehl for their continued help and support throughout this project. Thanks also to Julie Haley and Rob Lewis for their help with DSC, HPLC and NMR. Many thanks go to lab members of C120 and C302 both past and present for their help and interesting banter throughout my time in the lab. In particular Chris Welch, Cristina Alonso and Francesca Giuntini for their help with various reactions and NMR interpretation. Lastly, many thanks to both my parents and my lovely wife Michelle without whose support this work would not be possible as we look forward to the arrival of baby Benstead, who will have to read this at some point I‘m sure. 2 Abstract Several series of BODIPYs bearing mesogenic substituents were synthesised and their fluorescence and liquid crystal properties were characterized. Each compound prepared consisted of one BODIPY fluorophore and one, two or three mesogenic units based primarily on a cyanobiphenyl core. Initially, the mesogens were attached to the pyrrolic positions of the fluorophore, but it was found that mesogen attachment at the BODIPY 8- phenyl ring gave an increased preference for mesophase formation due to the molecules having a more ‗rod-like‘ (calamitic) shape. For several of the compounds, a monotropic nematic phase was exhibited, however, no layered phase (e.g.
    [Show full text]
  • Design, Synthesis, and Photophysical Properties of BODIPY
    Proceeding Paper Design, Synthesis, and Photophysical Properties of † BODIPY-Labeled Lupane Triterpenoids Rinat Gubaidullin, Darya Nedopekina, Adis Tukhbatullin, Eldar Davletshin and Anna Spivak * Institute of Petrochemistry and Catalysis of Russian Academy of Sciences, 141 Prospekt Oktyabrya, 450075 Ufa, Russia; [email protected] (R.G.); [email protected] (D.N.); [email protected] (A.T.); [email protected] (E.D.) * Correspondence: [email protected]; Tel.: +79174217106 † Presented at the 24th International Electronic Conference on Synthetic Organic Chemistry, 15 November–15 December 2020; Available online: https://ecsoc-24.sciforum.net/. Abstract: Novel boron-dipyrromethene difluoride (4,4-difluoro-4-bora-3α,4α-diaza-s-indacene) (BODIPY)-lupane triterpenoid conjugates bearing a fluorescent marker at the C-2 position of ring A of the triterpene core were obtained via the Sonogashira reaction as a key step. The starting com- pounds in the cross-coupling reaction were C-2 propynyl derivatives of betulinic or betulonic acids and fluorescent dyes with an iodo-group at C-2 or meso position of BODIPY-platform. The newly elaborated coupling procedure might have applicability in the synthesis of fluorescently-labeled triterpenoid conjugates suitable for biological assays. Keywords: pentacyclic triterpenoids; betulinic acid; BODIPY; fluorescent derivatives; Sonogashira coupling Citation: Gubaidullin, R.; Nedopekina, D.; Tukhbatullin, A.; Davletshin, E.; Spivak, A. Design, 1. Introduction Synthesis, and Photophysical Pentacyclic triterpenic acids, including the lupane family of triterpenoids (betulin, Properties of BODIPY-Labeled betulinic, and betulonic acids), are an important class of natural plant products. The wide- Lupane Triterpenoids. Chem. Proc. spread availability in nature, beneficial biological and pharmacological properties (anti- 2021, 3, 11.
    [Show full text]
  • S2 Emission from Chemically Modified Bodipys
    Electronic Supplementary Material (ESI) for Chemical Communications This journal is © The Royal Society of Chemistry 2012 S2 Emission from Chemically Modified BODIPYs Dae Won Cho,*a Mamoru Fujitsuka,b Jung Ho Ryu,c Myoung Hee Lee,a Hwan Kyu Kim,c Tetsuro Majima,b Chan Ima a Konkuk University MAT - Fraunhofer ISE Next Generation Solar Cell Research Center, Konkuk University, Seoul 143-701, Korea. Fax: 82 2 2201 0407; Tel: 82 2 450 0406; E-mail: [email protected], and [email protected] b Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan, E-mail: [email protected], and [email protected] c Department of Advanced Materials Chemistry and WCU Center for Next Generation Photovoltaic Systems, Korea University, Jochiwon, Chungnam 339-700, Korea, E-mail: [email protected] Experimental Synthetic General The synthesis of BODIPYs is depicted on Scheme 2. Intermediate compound (1) was prepared by treatment of pyrrole with 1,3-dibromo-5,5-dimethylhydantoin in the presence of AIBN followed by amine protection with p-toluenesulfonyl chloride. Reaction of (1) with 4-methoxyphenylboronic acid under the conditions of Suzuki cross-coupling reaction yielded (2). After protection of the tosyl group with 15% ethanolic NaOH in ethanol, the resulting intermediate (3) was reacted with methyl 4- formylbenzoate to obtain (4), the oxidation of which was achieved by 2,3-dichloro-5,6-dicyano-1,4-benzoquinone, a stronger reactant than 1,4-benzoquinone. The reaction proceeded smoothly but separating the highly colored compound by column chromatography was difficult, which explains the somewhat low yield of this step.
    [Show full text]
  • Improved Synthesis and Enhanced Reactivity of X-Bodipys by Travis Lee Lundrigan Submitted in Partial Fulfilment of the Requireme
    Improved Synthesis and Enhanced Reactivity of X-BODIPYs by Travis Lee Lundrigan Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia December 2017 © Copyright by Travis Lee Lundrigan, 2017 TABLE OF CONTENTS List of Tables ..................................................................................................................... vi List of Figures ................................................................................................................... vii List of Schemes .................................................................................................................. ix Abstract .............................................................................................................................. xi List of Abbreviations and Symbols Used ......................................................................... xii Acknowledgements .......................................................................................................... xiv Chapter 1 – Introduction ..................................................................................................... 1 1.1 – Structure and Properties of Dipyrrinato Ligands .................................................. 1 1.2 – Synthesis of Dipyrrins ........................................................................................... 2 1.3 – Dipyrrinato Complexes ......................................................................................... 4 1.4
    [Show full text]
  • New BODIPY Dye with a Large Stokes Shift for Biopolymer Labelling †
    Proceeding Paper New BODIPY Dye with a Large Stokes Shift for Biopolymer Labelling † Valeria I. Raskolupova 1,2, Tatyana V. Popova 1, Olga D. Zakharova 1, Tatyana V. Abramova 1,* and Vladimir N. Silnikov 1 1 Institute of Chemical Biology and Fundamental Medicine SB RAS, Lavrent’ev Ave, 8, 630090 Novosibirsk, Russia; [email protected] (V.I.R.); [email protected] (T.V.P.); [email protected] (O.D.Z.); [email protected] (V.N.S.) 2 Faculty of Natural Sciences, Novosibirsk State University, Pirogova St., 2, 630090 Novosibirsk, Russia * Correspondence: [email protected] † Presented at the 24th International Electronic Conference on Synthetic Organic Chemistry, 15 November–15 December 2020; Available online: https://ecsoc-24.sciforum.net/. Abstract: As the most abundant protein with a variety of physiological functions, human serum albumin (HSA) has been used extensively for the delivery and improvement of therapeutic mole- cules. Thiolactone chemistry provides a powerful tool to prepare albumin-based multimodal imag- ing probes and agents for boron neutron capture therapy (BNCT). For this purpose, boron contain- ing 4,4-Difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dye was designed and synthesized. BOD- IPY dyes are photostable neutral derivatives of 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene. These are widely used as chemosensors, laser materials and molecular probes. At the same time, BODIPY dyes, like most other fluorophores, have small or moderate Stokes shifts. Large Stokes shifts are preferred for fluorophores because of higher sensitivity of such probes and sensors. We succeeded in performing an annulation of pyrrole ring with coumarin heterocyclic system and achieved a re- markable difference in absorption and emission maximum of obtained fluorophore up to 100 nm.
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 9,605,078 B2 Bertozzi Et Al
    US0096.05078B2 (12) United States Patent (10) Patent No.: US 9,605,078 B2 BertoZZi et al. (45) Date of Patent: Mar. 28, 2017 (54) PICTET-SPENGLER LIGATION FOR 5,166,309 A 11/1992 Majet al. PROTEIN CHEMICAL MODIFICATION 5,171,264 A 12, 1992 Merril 5,213,891 A 5/1993 Majet al. 5,219,564 A 6/1993 Zalipsky et al. (71) Applicant: THE REGENTS OF THE 5,225,539 A 7, 1993 Winter UNIVERSITY OF CALIFORNIA, 5,275,838 A 1, 1994 Merrill Oakland, CA (US) 5,281,698 A 1/1994 Nitecki 5,298,643 A 3, 1994 Greenwald (72) Inventors: Carolyn Bertozzi, Berkeley, CA (US); (Continued) Paresh Agarwal, Berkeley, CA (US); Ellen M. Sletten, Somerville, MA (US) FOREIGN PATENT DOCUMENTS (73) Assignee: THE REGENTS OF THE EP O239.400 9, 1987 UNIVERSITY OF CALIFORNIA, EP O519596 12/1992 Oakland, CA (US) (Continued) (*) Notice: Subject to any disclaimer, the term of this OTHER PUBLICATIONS patent is extended or adjusted under 35 Van Maarseveen, Jan H. et al., “An approach to canthine derivatives U.S.C. 154(b) by 0 days. using the intramolecular pictet-Spengler condensation.” Tetrahedron (1995) 51(16) p. 4841-4852.* (21) Appl. No.: 14/443,149 Agarwal, Paresh and Bertozzi, Carolyn, “Modification of the pictet Spengler reaction for protein conjugation.” Abstracts of papers, (22) PCT Filed: Nov. 15, 2013 244th ACS national meeting and exposition (presented Aug. 21. 2012) ORGN-487.* (86). PCT No.: PCT/US2O13/070421 Van Maarseveen, Jan H. et al., “An approach to canthine derivatives using the intramolecular pictet-Spengler condensation.” Tetrahedron S 371 (c)(1), (1995) 51(6) p.
    [Show full text]
  • Preparation of Viscosity-Sensitive Isoxazoline/Isoxazolyl-Based Molecular Rotors and Directly Linked BODIPY−Fulleroisoxazoline
    Letter Cite This: Org. Lett. 2019, 21, 5713−5718 pubs.acs.org/OrgLett Preparation of Viscosity-Sensitive Isoxazoline/Isoxazolyl-Based Molecular Rotors and Directly Linked BODIPY−Fulleroisoxazoline from the Stable meso-(Nitrile Oxide)-Substituted BODIPY Yuriy V. Zatsikha,† Natalia O. Didukh,†,‡ Rachel K. Swedin,§ Viktor P. Yakubovskyi,‡ Tanner S. Blesener,† Andrew T. Healy,§ David E. Herbert,† David A. Blank,*,§ Victor N. Nemykin,*,† and Yuriy P. Kovtun*,‡ † Department of Chemistry, University of Manitoba, Winnipeg, MB R3T 2N2, Canada ‡ Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Murmanska str., 02660 Kyiv, Ukraine § Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States *S Supporting Information UTC). ABSTRACT: We developed a simple methodology for the preparation of stable meso-(nitrile oxide)-substituted BODI- PYs, which were characterized by spectroscopic methods and X-ray crystallography. These compounds were used for the preparation of isoxazoline− or isoxazolyl−BODIPYs by 1,3- dipolar cycloaddition reaction with dipolarophiles. Several o legitimately share published articles. BODIPYs possess molecular rotor behavior, including viscosity-dependent fluorescence. Transient absorption spec- troscopy and time-resolved fluorescence are indicative of a 3 orders of magnitude difference in the excited-state lifetime for dichloromethane and glycerol solutions. yes derived from the boron dipyrromethene (4,4- Scheme 1. Preparation of Stable BODIPY Nitrile
    [Show full text]
  • Supplementary Information Di- and Tri-Oxalkyl Derivatives of a Boron Dipyrromethene (BODIPY) Rotor Dye in Lipid Bilayers
    Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is © the Owner Societies 2014 Supplementary Information Di- and tri-oxalkyl derivatives of a boron dipyrromethene (BODIPY) rotor dye in lipid bilayers Marie Olšinová1, Piotr Jurkiewicz1, Michal Pozník2, Radek Šachl1, Tereza Prausová2, Martin Hof1, Václav Kozmík2, Filip Teplý3, Jiří Svoboda2, and Marek Cebecauer1 1Dept. Biophysical Chemistry, J. Heyrovsky Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v. v. i., Dolejskova 3, 18223 Prague, Czech Republic; 2 Department of Organic Chemistry, Institute of Chemical Technology, Prague, Czech Republic; 3 Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v. v. i., Flemingovo nam. 2, 18223 Prague, Czech Republic Content: 1. Synthesis of Di- and tri-oxalkyl derivatives of Boron Dipyrromethene (BODIPY) molecular rotor dyes 2. Localisation of the reference probe DiD in the lipid bilayer. 3. Supplementary Figures S1-S4 4. Anisotropy analysis: MATLAB code (separate file) 1. Synthesis of Di- and tri-oxalkyl derivatives of Boron Dipyrromethene (BODIPY) molecular rotor dyes General information 2-Methylpyrrole was prepared according toS1, 3,5-didodecyloxybenzaldehyde and 3,4,5- tridodecylbenzaldehyde by oxidation of the known benzyl alcohols.S2,S3 Column chromatography was performed using 60–100 mesh silica gel (Kieselgel 60, Merck). Melting points were determined on a Boetius Leova VM TG block and are uncorrected. Structures of intermediates and final products were confirmed by 1H NMR spectroscopy on Varian Gemini 300 HC instrument, 300 MHz for 1H and 75 MHz for 13C. Deuteriochloroform was used as solvent, the signal of the solvent served as internal standard.
    [Show full text]