Access Controls and Unix/Linux File Permissions
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UNIX Cheat Sheet – Sarah Medland Help on Any Unix Command List a Directory Change to Directory Make a New Directory Remove A
THE 2013 INTERNATIONAL WORKSHOP ON STATISTICAL METHODOLOGY FOR HUMAN GENOMIC STUDIES UNIX cheat sheet – Sarah Medland Help on any Unix command man {command} Type man ls to read the manual for the ls command. which {command} Find out where a program is installed whatis {command} Give short description of command. List a directory ls {path} ls -l {path} Long listing, with date, size and permisions. ls -R {path} Recursive listing, with all subdirs. Change to directory cd {dirname} There must be a space between. cd ~ Go back to home directory, useful if you're lost. cd .. Go back one directory. Make a new directory mkdir {dirname} Remove a directory/file rmdir {dirname} Only works if {dirname} is empty. rm {filespec} ? and * wildcards work like DOS should. "?" is any character; "*" is any string of characters. Print working directory pwd Show where you are as full path. Copy a file or directory cp {file1} {file2} cp -r {dir1} {dir2} Recursive, copy directory and all subdirs. cat {newfile} >> {oldfile} Append newfile to end of oldfile. Move (or rename) a file mv {oldfile} {newfile} Moving a file and renaming it are the same thing. View a text file more {filename} View file one screen at a time. less {filename} Like more , with extra features. cat {filename} View file, but it scrolls. page {filename} Very handy with ncftp . nano {filename} Use text editor. head {filename} show first 10 lines tail {filename} show last 10 lines Compare two files diff {file1} {file2} Show the differences. sdiff {file1} {file2} Show files side by side. Other text commands grep '{pattern}' {file} Find regular expression in file. -
Introduction to Linux – Part 1
Introduction to Linux – Part 1 Brett Milash and Wim Cardoen Center for High Performance Computing May 22, 2018 ssh Login or Interactive Node kingspeak.chpc.utah.edu Batch queue system … kp001 kp002 …. kpxxx FastX ● https://www.chpc.utah.edu/documentation/software/fastx2.php ● Remote graphical sessions in much more efficient and effective way than simple X forwarding ● Persistence - can be disconnected from without closing the session, allowing users to resume their sessions from other devices. ● Licensed by CHPC ● Desktop clients exist for windows, mac, and linux ● Web based client option ● Server installed on all CHPC interactive nodes and the frisco nodes. Windows – alternatives to FastX ● Need ssh client - PuTTY ● http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html - XShell ● http://www.netsarang.com/download/down_xsh.html ● For X applications also need X-forwarding tool - Xming (use Mesa version as needed for some apps) ● http://www.straightrunning.com/XmingNotes/ - Make sure X forwarding enabled in your ssh client Linux or Mac Desktop ● Just need to open up a terminal or console ● When running applications with graphical interfaces, use ssh –Y or ssh –X Getting Started - Login ● Download and install FastX if you like (required on windows unless you already have PuTTY or Xshell installed) ● If you have a CHPC account: - ssh [email protected] ● If not get a username and password: - ssh [email protected] Shell Basics q A Shell is a program that is the interface between you and the operating system -
STAT 625: Statistical Case Studies 1 Our Computing Environment(S)
John W. Emerson, Department of Statistics, Yale University © 2013 1 STAT 625: Statistical Case Studies John W. Emerson Yale University Abstract This term, I’ll generally present brief class notes and scripts, but much of the lecture material will simply be presented in class and/or available online. However, student participation is a large part of this course, and at any time I may call upon any of you to share some of your work. Be prepared. This won’t be a class where you sit and absorb material. I strongly encourage you to work with other students; you can learn a lot from each other. To get anything out of this course you’ll need to put in the time for the sake of learning and strengthening your skills, not for the sake of jumping through the proverbial hoop. Lesson 1: Learning how to communicate. This document was created using LATEX and Sweave (which is really an R package). There are some huge advantages to a workflow like this, relating to a topic called reproducible research. Here’s my thought: pay your dues now, reap the benefits later. Don’t trust me on everything, but trust me on this. A sister document was created using R Markdown and the markdown package, and this is also acceptable. Microsoft Office is not. So, in today’s class I’ll show you how I produced these documents and I’ll give you the required files. I recommend you figure out how to use LATEX on your own computer. You already have Sweave, because it comes with R. -
System Calls and I/O
System Calls and I/O CS 241 January 27, 2012 Copyright ©: University of Illinois CS 241 Staff 1 This lecture Goals Get you familiar with necessary basic system & I/O calls to do programming Things covered in this lecture Basic file system calls I/O calls Signals Note: we will come back later to discuss the above things at the concept level Copyright ©: University of Illinois CS 241 Staff 2 System Calls versus Function Calls? Copyright ©: University of Illinois CS 241 Staff 3 System Calls versus Function Calls Function Call Process fnCall() Caller and callee are in the same Process - Same user - Same “domain of trust” Copyright ©: University of Illinois CS 241 Staff 4 System Calls versus Function Calls Function Call System Call Process Process fnCall() sysCall() OS Caller and callee are in the same Process - Same user - OS is trusted; user is not. - Same “domain of trust” - OS has super-privileges; user does not - Must take measures to prevent abuse Copyright ©: University of Illinois CS 241 Staff 5 System Calls System Calls A request to the operating system to perform some activity System calls are expensive The system needs to perform many things before executing a system call The computer (hardware) saves its state The OS code takes control of the CPU, privileges are updated. The OS examines the call parameters The OS performs the requested function The OS saves its state (and call results) The OS returns control of the CPU to the caller Copyright ©: University of Illinois CS 241 Staff 6 Steps for Making a System Call -
A Brief Introduction to Unix-2019-AMS
Brief Intro to Linux/Unix Brief Intro to Unix (contd) A Brief Introduction to o Brief History of Unix o Compilers, Email, Text processing o Basics of a Unix session o Image Processing Linux/Unix – AMS 2019 o The Unix File System Pete Pokrandt o Working with Files and Directories o The vi editor UW-Madison AOS Systems Administrator o Your Environment [email protected] o Common Commands Twitter @PTH1 History of Unix History of Unix History of Unix o Created in 1969 by Kenneth Thompson and Dennis o Today – two main variants, but blended o It’s been around for a long time Ritchie at AT&T o Revised in-house until first public release 1977 o System V (Sun Solaris, SGI, Dec OSF1, AIX, o It was written by computer programmers for o 1977 – UC-Berkeley – Berkeley Software Distribution (BSD) linux) computer programmers o 1983 – Sun Workstations produced a Unix Workstation o BSD (Old SunOS, linux, Mac OSX/MacOS) o Case sensitive, mostly lowercase o AT&T unix -> System V abbreviations 1 Basics of a Unix Login Session Basics of a Unix Login Session Basics of a Unix Login Session o The Shell – the command line interface, o Features provided by the shell o Logging in to a unix session where you enter commands, etc n Create an environment that meets your needs n login: username n Some common shells n Write shell scripts (batch files) n password: tImpAw$ n Define command aliases (this Is my password At work $) Bourne Shell (sh) OR n Manipulate command history IHateHaving2changeMypasswordevery3weeks!!! C Shell (csh) n Automatically complete the command -
Ext4 File System and Crash Consistency
1 Ext4 file system and crash consistency Changwoo Min 2 Summary of last lectures • Tools: building, exploring, and debugging Linux kernel • Core kernel infrastructure • Process management & scheduling • Interrupt & interrupt handler • Kernel synchronization • Memory management • Virtual file system • Page cache and page fault 3 Today: ext4 file system and crash consistency • File system in Linux kernel • Design considerations of a file system • History of file system • On-disk structure of Ext4 • File operations • Crash consistency 4 File system in Linux kernel User space application (ex: cp) User-space Syscalls: open, read, write, etc. Kernel-space VFS: Virtual File System Filesystems ext4 FAT32 JFFS2 Block layer Hardware Embedded Hard disk USB drive flash 5 What is a file system fundamentally? int main(int argc, char *argv[]) { int fd; char buffer[4096]; struct stat_buf; DIR *dir; struct dirent *entry; /* 1. Path name -> inode mapping */ fd = open("/home/lkp/hello.c" , O_RDONLY); /* 2. File offset -> disk block address mapping */ pread(fd, buffer, sizeof(buffer), 0); /* 3. File meta data operation */ fstat(fd, &stat_buf); printf("file size = %d\n", stat_buf.st_size); /* 4. Directory operation */ dir = opendir("/home"); entry = readdir(dir); printf("dir = %s\n", entry->d_name); return 0; } 6 Why do we care EXT4 file system? • Most widely-deployed file system • Default file system of major Linux distributions • File system used in Google data center • Default file system of Android kernel • Follows the traditional file system design 7 History of file system design 8 UFS (Unix File System) • The original UNIX file system • Design by Dennis Ritche and Ken Thompson (1974) • The first Linux file system (ext) and Minix FS has a similar layout 9 UFS (Unix File System) • Performance problem of UFS (and the first Linux file system) • Especially, long seek time between an inode and data block 10 FFS (Fast File System) • The file system of BSD UNIX • Designed by Marshall Kirk McKusick, et al. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
The Linux Command Line
The Linux Command Line Fifth Internet Edition William Shotts A LinuxCommand.org Book Copyright ©2008-2019, William E. Shotts, Jr. This work is licensed under the Creative Commons Attribution-Noncommercial-No De- rivative Works 3.0 United States License. To view a copy of this license, visit the link above or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042. A version of this book is also available in printed form, published by No Starch Press. Copies may be purchased wherever fine books are sold. No Starch Press also offers elec- tronic formats for popular e-readers. They can be reached at: https://www.nostarch.com. Linux® is the registered trademark of Linus Torvalds. All other trademarks belong to their respective owners. This book is part of the LinuxCommand.org project, a site for Linux education and advo- cacy devoted to helping users of legacy operating systems migrate into the future. You may contact the LinuxCommand.org project at http://linuxcommand.org. Release History Version Date Description 19.01A January 28, 2019 Fifth Internet Edition (Corrected TOC) 19.01 January 17, 2019 Fifth Internet Edition. 17.10 October 19, 2017 Fourth Internet Edition. 16.07 July 28, 2016 Third Internet Edition. 13.07 July 6, 2013 Second Internet Edition. 09.12 December 14, 2009 First Internet Edition. Table of Contents Introduction....................................................................................................xvi Why Use the Command Line?......................................................................................xvi -
Student Number: Surname: Given Name
Computer Science 2211a Midterm Examination Sample Solutions 9 November 20XX 1 hour 40 minutes Student Number: Surname: Given name: Instructions/Notes: The examination has 35 questions on 9 pages, and a total of 110 marks. Put all answers on the question paper. This is a closed book exam. NO ELECTRONIC DEVICES OF ANY KIND ARE ALLOWED. 1. [4 marks] Which of the following Unix commands/utilities are filters? Correct answers are in blue. mkdir cd nl passwd grep cat chmod scriptfix mv 2. [1 mark] The Unix command echo HOME will print the contents of the environment variable whose name is HOME. True False 3. [1 mark] In C, the null character is another name for the null pointer. True False 4. [3 marks] The protection code for the file abc.dat is currently –rwxr--r-- . The command chmod a=x abc.dat is equivalent to the command: a. chmod 755 abc.dat b. chmod 711 abc.dat c. chmod 155 abc.dat d. chmod 111 abc.dat e. none of the above 5. [3 marks] The protection code for the file abc.dat is currently –rwxr--r-- . The command chmod ug+w abc.dat is equivalent to the command: a. chmod 766 abc.dat b. chmod 764 abc.dat c. chmod 754 abc.dat d. chmod 222 abc.dat e. none of the above 2 6. [3 marks] The protection code for def.dat is currently dr-xr--r-- , and the protection code for def.dat/ghi.dat is currently -r-xr--r-- . Give one or more chmod commands that will set the protections properly so that the owner of the two files will be able to delete ghi.dat using the command rm def.dat/ghi.dat chmod u+w def.dat or chmod –r u+w def.dat 7. -
Unix Security Overview: 1
CIS/CSE 643: Computer Security (Syracuse University) Unix Security Overview: 1 Unix Security Overview 1 User and Group • Users – root: super user (uid = 0) – daemon: handle networks. – nobody: owns no files, used as a default user for unprivileged operations. ∗ Web browser can run with this mode. – User needs to log in with a password. The encrypted password is stored in /etc/shadow. – User information is stored in /etc/passwd, the place that was used to store passwords (not anymore). The following is an example of an entry in this file. john:x:30000:40000:John Doe:/home/john:/usr/local/bin/tcsh • Groups – Sometimes, it is more convenient if we can assign permissions to a group of users, i.e. we would like to assign permission based on groups. – A user has a primary group (listed in /etc/passwd), and this is the one associated to the files the user created. – Any user can be a member of multiple groups. – Group member information is stored in /etc/group % groups uid (display the groups that uid belongs to) – For systems that use NIS (Network Information Service), originally called Yellow Page (YP), we can get the group information using the command ypcat. % ypcat group (can display all the groups and their members) 2 File Permissions • File Permissions – The meaning of the permission bits in Unix. ∗ Owner (u), Group (g), and Others (o). ∗ Readable (r), Writable (w), and Executable (x). ∗ Example: -rwxrwxrwx (777) • Permissions on Directories: – r: the directory can be listed. – w: can create/delete a file or a directory within the directory. -
File Security Lock Down Your Data
File Security Lock Down Your Data Brian Reames January 22, 2012 Table of Contents 1.0 Basic Linux Permissions...............................................................................................................4 1.1 Determining Permissions……………………………………………………………………..................... 5 1.2 File Permissions vs. Directory Permissions………………………………………………….............. 6 1.3 Changing Permissions………………………………………………………………………….................... 7 1.3.1 Symbolic Method…………………………………………………………………….................... 8 1.3.2 Octal Method………………………………………………………………………..................... 10 1.3.3 Changing Permissions Graphically……………………………………………….............. 12 1.4 Examples of Unintentional Access…………………………………………………………................. 13 2.0 Setting Default Permissions………………………………………………………………………...................... 15 2.1 Common umask Settings……………………………………………………………………....................17 3.0 Advanced Linux Permissions……………………………………………………………………….................... 18 3.1 Special Permission: setuid………………………………………………………………….....................19 3.1.1 Setting the setuid Permission……………………………………………………................ 20 3.1.2 Caution Regarding setuid………………………………………………………….................22 3.2 Special Permission setgid……………………………………………………………………................... 23 3.2.1 setgid on a File……………………………………………………………………...................... 24 3.2.2 setgid on a Directory……………………………………………………………….................. 25 3.2.3 Caution Regarding setgid…………………………………………………………................. 28 3.3 Special Permission: sticky bit……………………………………………………………….................. -
Lab #6: Stat Overview Stat
February 17, 2017 CSC 357 1 Lab #6: Stat Overview The purpose of this lab is for you to retrieve from the filesystem information pertaining to specified files. You will use portions of this lab in Assignment #4, so be sure to write code that can be reused. stat Write a simplified version of the stat utility available on some Unix distributions. This program should take any number of file names as command-line arguments and output information pertaining to each file as described below (you should use the stat system call). The output from your program should look as follows: File: ‘Makefile’ Type: Regular File Size: 214 Inode: 4702722 Links: 1 Access: -rw------- The stat system call provides more information about a file, but this lab only requires the above. The format of each field follows: • File: the name of the file being examined. • Type: the type of file output as “Regular File”, “Directory”, “Character Device”, “Block Device”, “FIFO”, or “Symbolic Link” • Size: the number of bytes in the file. • Inode: the file’s inode. • Links: the number of links to the file. • Access: the access permissions for the file. This field is the most involved since the output string can take many forms. The first bit of the access permissions denotes the type (similar to the second field above). The valid characters for the first bit are: b – Block special file. c – Character special file. d – Directory. l – Symbolic link. p – FIFO. - – Regular file. The remaining bits denote the read, write and execute permissions for the user, group, and others.