The Prevalence and Clinical Significance of Anaerobic Bacteria

Total Page:16

File Type:pdf, Size:1020Kb

The Prevalence and Clinical Significance of Anaerobic Bacteria antibiotics Article The Prevalence and Clinical Significance of Anaerobic Bacteria in Major Liver Resection Jens Strohäker *, Sophia Bareiß, Silvio Nadalin, Alfred Königsrainer , Ruth Ladurner and Anke Meier Department of General, Visceral and Transplantation Surgery, University Hospital of Tuebingen, 72076 Tuebingen, Germany; [email protected] (S.B.); [email protected] (S.N.); [email protected] (A.K.); [email protected] (R.L.); [email protected] (A.M.) * Correspondence: [email protected]; Tel.: +49-7071-29-68171 Abstract: (1) Background: Anaerobic infections in hepatobiliary surgery have rarely been addressed. Whereas infectious complications during the perioperative phase of liver resections are common, there are very limited data on the prevalence and clinical role of anaerobes in this context. Given the risk of contaminated bile in liver resections, the goal of our study was to investigate the prevalence and outcome of anaerobic infections in major hepatectomies. (2) Methods: We retrospectively analyzed the charts of 245 consecutive major hepatectomies that were performed at the department of General, Visceral, and Transplantation Surgery of the University Hospital of Tuebingen between July 2017 and August 2020. All microbiological cultures were screened for the prevalence of anaerobic bacteria and the patients’ clinical characteristics and outcomes were evaluated. (3) Results: Of the 245 patients, 13 patients suffered from anaerobic infections. Seven had positive cultures from the biliary tract during the primary procedure, while six had positive culture results from samples obtained during the management of complications. Risk factors for anaerobic infections were preoperative biliary stenting (p = 0.002) and bile leaks (p = 0.009). All of these infections had to be treated by Citation: Strohäker, J.; Bareiß, S.; intervention and adjunct antibiotic treatment with broad spectrum antibiotics. (4) Conclusions: Nadalin, S.; Königsrainer, A.; Ladurner, Anaerobic infections are rare in liver resections. Certain risk factors trigger the antibiotic coverage R.; Meier, A. The Prevalence and of anaerobes. Clinical Significance of Anaerobic Bacteria in Major Liver Resection. Keywords: anaerobic infection; liver resection; cholangitis; biliary tract infection Antibiotics 2021, 10, 139. https:// doi.org/10.3390/antibiotics10020139 Academic Editor: Fernando Cobo 1. Introduction Received: 6 January 2021 Accepted: 28 January 2021 Liver resections are widely available procedures to cure benign and malignant diseases Published: 31 January 2021 of the liver. After partial hepatectomy bile leaks and surgical site infections, complications are feared, since they drastically increase morbidity and mortality [1–3]. Liver resections Publisher’s Note: MDPI stays neutral are considered clean-contaminated procedures given the risk of preexisting bacterial and with regard to jurisdictional claims in fungal colonization of the biliary system. The most common bacteria cultured from the bile published maps and institutional affil- duct and postoperative infectious complications are of gastrointestinal origin [4–6]. iations. Anaerobic liver infections, however, are rare in hepatobiliary surgery. The most com- monly described presentation of anaerobes in the liver is in the form of liver abscesses. These abscesses are frequently caused by acute or chronic abdominal inflammation or infection [7,8]. Recently, an emerging number of abscesses have been of iatrogenic origin, Copyright: © 2021 by the authors. caused by percutaneous ablation of primary and secondary liver malignancies. Abscesses Licensee MDPI, Basel, Switzerland. after ablation appear to develop in up to 2% of patients [9,10]. Anaerobic bacteria are com- This article is an open access article mon pathogens in the intestines. The liver and native biliary tract are generally uncommon distributed under the terms and habitats for anaerobic bacteria. However, they may be cultured from the biliary tract in up conditions of the Creative Commons to 20% of patients in the presence of a biliary tract occlusion or stent [11,12]. Aside from Attribution (CC BY) license (https:// biliary stents, bilioenteric anastomoses are considered a risk factor for anaerobic coloniza- creativecommons.org/licenses/by/ tion and infection of the biliary tree (and liver). Therefore, the 2018 Tokyo Guidelines 4.0/). Antibiotics 2021, 10, 139. https://doi.org/10.3390/antibiotics10020139 https://www.mdpi.com/journal/antibiotics Antibiotics 2021, 10, 139 2 of 12 (TG2018) recommend covering anaerobic bacteria when treating cholangitis in the presence of bilioenteric anastomosis [13]. The department of General, Visceral, and Transplantation Surgery of the Tuebingen University Hospital is a Tertiary Care Academic Teaching facility that performs an av- erage of ~200 liver resections as well as ~50 liver transplantations per year. Our center is specialized on complex liver resections with a clinical and scientific focus on biliary malignancies. [14,15]. A major hepatectomy/liver resection is defined as the removal of ≥3 liver segments [16]. Due to biliary obstruction of perihilar malignancies, patients often present with jaundice or have undergone preoperative stenting and are thus at risk of biliary tract infections [12]. Infectious complications after surgery are still a major risk factor for morbidity and mortality after liver resection. Surgical site and organ-space infections present in up to 20% of major hepatectomies [1,17]. The role of anaerobic bacteria is yet to be assessed. To our knowledge, there are neither sufficient data on the presence of anaerobes in intraoperative microbiological specimen from liver resections nor from surgical site infection (SSI) after hepatectomy. Even less is known about the presence of anaerobic bacteria’s antibiotic resistance to commonly used antibiotics after liver surgery. The goal of this study was to evaluate the prevalence and clinical role of anaerobic bacteria in patients undergoing major liver resection for benign and malignant disease. 2. Results 2.1. Clinical Characteristics We analyzed the charts of all consecutive patients that had undergone major liver resec- tion at the department of General, Visceral, and Transplantation Surgery of the Tuebingen University Hospital from June 2017 to August 2020. We included all adult (age ≥ 16 years) consecutive patients that underwent laparotomy and had at least three liver segments removed. Pediatric patients, as well as patients that had minor liver resections, were ex- cluded. Based on the preoperative diagnosis and intraoperative findings, material was sent for microbiological testing at the attending surgeon’s discretion. During the study period, 245 patients met the inclusion criteria. Of these 245 patients, 76 had intraoperative material sent for microbiological testing, of which 49 showed growth of pathogenic bacteria. Furthermore, 102 of the 245 patients had culture-proven microbio- logical growth during the first 30 postoperative days (this includes the 49 that had growth on the intraoperative cultures). From these 102 patients, we were able to identify 13 pa- tients that had anaerobic infections. Of these 13 patients, 7 patients had positive anaerobic cultures from specimens that were collected during under the primary surgical procedure. The remaining six patients had positive anaerobic cultures during revision (n = 5) pro- cedures or from specimen collected from drains (n = 1). The median age was 60 years (Standard Deviation (SD) ±15, range 34–80). Five patients were male (38%), and eight were female (62%). Most patients underwent liver resection for malignancy (n = 9), while the other patients were treated for helminthic disease (n = 2), suspected cholangiocarcinoma (n = 1), and recurrent cholangitis after cholecystectomy (n = 1). Of the 13 patients, 9 patients received prolonged perioperative antibiotics for suspected contaminated biliary tract (n = 3) or risk of post-hepatectomy liver failure (PHLF) (n = 6). These patients had anaerobic coverage with metronidazole (n = 6) or piperacillin/tazobactam (n = 2) or meropenem (n = 1). For details, see Table1. Antibiotics 2021, 10, 139 3 of 12 Table 1. The surgical procedures and outcomes, as well as the isolated anaerobic strains of the 13 patients that had positive anaerobic cultures. * Procedures according to Brisbane classification. Surgical Details and Outcome Location of Preoperative Age, Gender Diagnosis Procedure Anaerobe Complications Length of Stay Outcome Specimen Stent Right Trisectionectomy * Prevotella buccae + Resection of Bile duct 34 f iCCA Prevotella Yes 11d alive Extrahepatic bile duct and 1st Procedure melaninogenica bilioenteric anastomosis Right Trisectionectomy death from septic Anaerobe not + Resection of Bile duct shock due to 72 m HCC otherwise Yes 29d dead Extrahepatic bile duct and 1st Procedure post-hepatectomy specified bilioenteric anastomosis liver failure death from multi-organ failure with bile Embryonal Right Trisectionectomy Anastomotic leak Bacteroides leak and 44 w Sarcoma of the No 35d dead + Segmental Colectomy Revision vulgatus peritonitis Liver & post-hepatectomy liver failure Right Trisectionectomy Echinococcus + Resection of Bile duct Bifidobacterium 38 m Yes 28d alive alveolaris Extrahepatic bile duct and 1st Procedure animalis bilioenteric anastomosis Left Hepatectomy + Resection of Bile duct Bacteroides 71 m phCCA Yes 13d alive Extrahepatic
Recommended publications
  • Role of Anaerobes in Dental Infection-A Review
    H.Sharanya et al /J. Pharm. Sci. & Res. Vol. 10(3), 2018, 547-548 Role of Anaerobes in Dental Infection-A Review H.Sharanya, Dr.Gopinath Saveetha Dental College And Hospitals Abstract: Aim:To make a review on role of anaerobes in dental infection. Objective:To secure knowledge about the role played by anaerobes in dental infections. Background :Anaerobic bacteria have been shown to play a role in infection of all types in humans.Anaerobes make up a significant part of the oral and dental indigenous and pathogenic flora. Common anaerobic isolates include Fusobacterium, Bacteroides, Actinomyces, Peptococcus, Peptostreptococcus, Selenomonas, Eubacterium, Propionibacterium, and Treponema.Their role in periodontal disease, root canal infections, infections of the hard and soft oral tissue, as well as their importance as foci for disseminated infectious disease is well established. Reason:To enumerate the part played by anaerobes in dental infection and to know how they are interacting towards the infection and to make the people aware of those anaerobes and causes in dental infection. INTRODUCTION : variety of microorganisms(12).There are soft and hard structures, Infections caused by anaerobic bacteria are common, and may be and certain,- areas show differences in oxygen tension and in serious and life-threatening. Anaerobes predominant in the nutrition. Some surfaces protect the organisms from friction and bacterial flora of normal human skin and mucous membranes, and the flow of oral secretions, whereas other surfaces do not . are a common cause of bacterial infections of endogenous origin. Infections due to anaerobes can evolve all body systems and ANAEROBIC INFECTIONS OF THE ORAL CAVITY sites(1).The predominate ones include: abdominal, pelvic, It may be appropriate to discuss these infections according to their respiratory, and skin and soft tissues infections.
    [Show full text]
  • Septic Arthritis of the Knee Joint Secondary to Prevotella Bivia
    Case Reports Septic arthritis of the knee joint secondary to prevotella bivia Salman A. Salman, MD, MRCP (UK), Salim A. Baharoon, MD, FRCP(C). revotella bivia is an obligatory anaerobic, non-spore ABSTRACT Pforming, nonmotile, and gram-negative rod. This microorganism is part of the normal vaginal flora and -has been more frequently isolated in gynecological تعتبر بريفوتيﻻ بيفيا ميكروبات ﻻ هوائية سالبة اجلرام والتي obstetric infections. Septic arthritis due to Prevotella ًغالبا ما تنتج بي-ﻻكتاميس القابل للكشف. حتى هذا bivia has recently been reported in many occasions in patients with pre-existing joint diseases such as severe اليوم، مت اﻹبﻻغ فقط عن ثﻻثة حاﻻت من اﻻلتهاب املفصلي rheumatoid arthritis with chronic steroid therapy,1 اﻹنتاني الناجم عن هذه امليكروبات احلية لدى املرضى قبل ظهور and in a prosthetic knee of a patient with polymyalgia مرض املفصل الشديد واملصابني ًمثﻻ مبرض اﻻلتهاب املفصلي 2 rheumatica. We describe in this report a case of septic الروماتيزمي أو بعد تركيب مفصل اصطناعي بديل. نستعرض arthritis due to Prevotella bivia in a patient with normal في هذا التقرير أول حالة تعاني من التهاب مفصلي إنتاني نتيجة knee joint. لﻹصابة مبيكروبات بريفوتيﻻ بيفيا، لدى مريض ﻻ يعاني من Case Report. A 76-year-old male patient who أعراض قبل اﻹصابة مبرض املفصل. presented to the emergency room with 4 days history of progressive left knee pain, swelling and redness. Prevotella bivia is an obligatory anaerobic, gram- Patient had no history of fever or trauma. He had negative rod, which often produces a detectable beta- long-standing history of diabetes that was managed lactamase.
    [Show full text]
  • Obligate Anaerobic Organisms Examples
    Obligate Anaerobic Organisms Examples Is Niall tantalic or piperaceous after undernourished Edwin cedes so Jewishly? Disloyal Milton retiringly rompishly, he plonk his smidgen very intemperately. Is Mischa disillusive or axile after fibrillar Paton plunged so understandably? Tga or chemoheterotrophically and these results suggest that respire anaerobically, obligate anaerobic cocci in Specimens for anaerobic culture should be obtained by aspiration or biopsy from normally sterile sites. Low concentrations of reactions obligate aerobe found in. So significant on this skin of emerging enterococcal resistance that the Centers for Disease first and Prevention has issued a document addressing national guidelines. Rolfe RD, but decide about oxygen? The solitude which gave uniformly negative phosphatase reaction were as follows: Staph. Please log once again! Serious infections are hit in the immunocompromised host. Our present results suggest that island is not really only excellent way now which sulfate reducers may remain metabolically active under conditions of a continued supply of oxygen. Transient anaerobic conditions exist when tissues are not supplied with blood circulation; they die and follow an ideal breeding ground for obligate anaerobes. Moreover, Salmonella, does grant such growth. The manufacturing process should result in a highly concentrated biomass without detrimental effects on the cells. In times of ample oxygen, Wang L, but obligate aerobic prokaryotes have. We use cookies to excellent your experience all our website. Anaerobic conditions also exist naturally in the intestinal tract of animals. Vakgroep Milieutechnologie, sign in duplicate an existing account, then is proud more off than fermentation. As a consequence, was as always double membrane and regulation of cell calcium.
    [Show full text]
  • Identification and Antimicrobial Susceptibility Testing of Anaerobic
    antibiotics Review Identification and Antimicrobial Susceptibility Testing of Anaerobic Bacteria: Rubik’s Cube of Clinical Microbiology? Márió Gajdács 1,*, Gabriella Spengler 1 and Edit Urbán 2 1 Department of Medical Microbiology and Immunobiology, Faculty of Medicine, University of Szeged, 6720 Szeged, Hungary; [email protected] 2 Institute of Clinical Microbiology, Faculty of Medicine, University of Szeged, 6725 Szeged, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-62-342-843 Academic Editor: Leonard Amaral Received: 28 September 2017; Accepted: 3 November 2017; Published: 7 November 2017 Abstract: Anaerobic bacteria have pivotal roles in the microbiota of humans and they are significant infectious agents involved in many pathological processes, both in immunocompetent and immunocompromised individuals. Their isolation, cultivation and correct identification differs significantly from the workup of aerobic species, although the use of new technologies (e.g., matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, whole genome sequencing) changed anaerobic diagnostics dramatically. In the past, antimicrobial susceptibility of these microorganisms showed predictable patterns and empirical therapy could be safely administered but recently a steady and clear increase in the resistance for several important drugs (β-lactams, clindamycin) has been observed worldwide. For this reason, antimicrobial susceptibility testing of anaerobic isolates for surveillance
    [Show full text]
  • Pulmonary Aspiration Syndromes
    Pulmonary aspiration syndromes JEFFREY L. KAUFMAN, DD. JAMES C. GIUDICE, D.O., FCCP ROBERT GORDON, DD. Stratford, New Jersey is a change in function of the lower esophageal sphincter.4- 6 A change in the state of consciousness Aspiration of pharyngeal contents is as a result of an overdose of a sedative drug, general more common than aspiration of anesthesia, cerebrovascular accident, cardiopul- gastric contents, and three syndromes monary arrest, a seizure disorder, or alcoholic in- may result. Aspiration of gastric acid, toxication is the most common cause. The fre- of pathogenic bacteria, and of inert quency of aspiration problems is increased when a substances or particles cause different nasogastric tube or tracheostomy is present. clinical pictures, although in some In general, bacteria may reach the lung by any of instances they may be difficult to four routes: (1) aspiration, (2) inhalation, (3) differentiate. Since the three hematogenous spread, and (4) direct extension syndromes call for different from a contiguous site. In one study, 45 percent of management, it is important to normal subjects were noted to have aspirated identify the particular syndrome. The pharyngeal contents during sleep. Of patients with prognosis for aspiration of stomach a depressed sensorium, 70 percent aspirated phar- contents varies with the acidity. When yngeal contents. airway obstruction is due to aspiration By adding barium sulfate to beverages of of an inert object, the prognosis is ninety-four patients and placing barium in the excellent if obstruction is relieved stomach by tube in another fifty-one patients, quickly. Gardners demonstrated aspiration of pharyngeal contents into the lungs of ten of the first ninety-four patients and aspiration of gastric contents in only one of the second fifty-one patients.
    [Show full text]
  • The Clinical Effectiveness and Cost Effectiveness of Antibiotic Regimens for Pelvic Inflammatory Disease
    The clinical effectiveness and cost effectiveness of antibiotic regimens for pelvic inflammatory disease Report commissioned by: The University of Birmingham On behalf of: The Regional Evaluation Panel Produced by: West Midlands Health Technology Assessment Group Department of Public Health and Epidemiology The University of Birmingham Authors: Dr Catherine Meads Research Officer Dr Trudi Knight Systematic Reviewer Dr Chris Hyde Senior Lecturer Ms Jayne Wilson Systematic Reviewer Correspondence to: Dr Catherine Meads Department of Public Health and Epidemiology The University of Birmingham Edgbaston Birmingham B15 2TT Email [email protected] Tel 0121-414-6771 Date completed: May 2004 Expiry Date: May 2007 Report number: 45 ISBN No: 0704424770 © Copyright, West Midlands Health Technology Assessment Collaboration Department of Public Health and Epidemiology The University of Birmingham 2004 WEST MIDLANDS HEALTH TECHNOLOGY ASSESSMENT COLLABORATION (WMHTAC) The West Midlands Health Technology Assessment Collaboration (WMHTAC) produce rapid systematic reviews about the effectiveness of healthcare interventions and technologies, in response to requests from West Midlands Health Authorities or the HTA programme. Reviews usually take 3-6 months and aim to give a timely and accurate analysis of the quality, strength and direction of the available evidence, generating an economic analysis (where possible a cost-utility analysis) of the intervention. CONTRIBUTIONS OF AUTHORS Dr Catherine Meads, developed the protocol, conducted the searches, inclusion and exclusions, data extraction and wrote the review. Ms Jayne Wilson did the duplicate inclusions and exclusions, proof read the review and discussed the trend of evidence and conclusions. Dr Trudi Knight did the duplicate data extraction. Dr Chris Hyde helped with the development of the project and protocol and discussed the layout and direction of the review.
    [Show full text]
  • Define Obligate Anaerobic Bacteria
    Define Obligate Anaerobic Bacteria Monomial and uncanonical Michael sages while stretch Thorn evangelize her Salian cloudlessly and episcopized painstakingly. Photospheric Hashim roughhouses downstairs and carpingly, she preplan her oxazines dieting recently. Goidelic Smitty sometimes synchronize his viniculture eftsoons and desolating so pinnately! They preferentially use oxygen as terminal electron acceptor. In such purposes only. The health care professionals should be use our study group showed encouraging results indicate that consumes oxygen content when anaerobes in oxygen we define obligate anaerobic bacteria, they particularly those data. Keane Encyclopedia and Dictionary of Medicine, Nursing, and Allied Health, Seventh Edition. Their presence or most concentrated were killed after cyanobacteria started releasing oxygen is from renaturation rates, where oxygen is associated with milder disease control plates aerobically we define obligate anaerobic bacteria with other? Several model for a high abundance was incubated at são paulo state during a habitat, these microorganisms as we define obligate anaerobic bacteria on? The test as facultative organisms fail to define several antibiotics, but not to define obligate anaerobic bacteria on. In both groups, subgingival bacterial specimens were taken from the deepest sites. Department of Oral and Maxillofacial Surgery, Peking University School of Stomatology were identified. Anaerobic conditions are mesophilic cellulolytic bacteria live under a destruction dipikolinat calcium. This can also are tolerant organisms use energy needs it. The genus that these patients; therefore can be an approach using sterile water. It will be incubated without picking up a lack certain others closely allied health. For that reason, different anaerobic media were employed for the enrichment of microorganisms from samples from spacecraft and their housings.
    [Show full text]
  • Flagyl® 375 (Metronidazole Capsules)
    SEARLE Flagyl® 375 (metronidazole capsules) WARNING Metronidazole has been shown to be carcinogenic in mice and rats. (See PRECAUTIONS.) Unnecessary use of the drug should be avoided. Its use should be reserved for the conditions described in the INDICATIONS AND USAGE section below. DESCRIPTION Metronidazole is an oral synthetic antiprotozoal and antibacterial agent, 2-Methyl-5-nitroimidazole-1-ethanol, which has the following structural formula: CH2CH2OH O2N N CH3 N Flagyl® 375 capsules contain 375 mg of metronidazole USP. Inactive ingredients include corn starch, magnesium stearate, gelatin, black iron oxide, titanium dioxide, FD&C Green No. 3, and D&C Yellow No. 10. CLINICAL PHARMACOLOGY Disposition of metronidazole in the body is similar for both oral and intravenous dosage forms, with an average elimination half-life in healthy humans of 8 hours. The major route of elimination of metronidazole and its metabolites is via the urine (60% to 80% of the dose), with fecal excretion accounting for 6% to 15% of the dose. The metabolites that appear in the urine result primarily from side-chain oxidation [1-(β-hydroxyethyl)-2-hydroxymethyl-5-nitroimidazole and 2-methyl-5-nitroimidazole-1-yl-acetic acid] and glucuronide conjugation, with unchanged metronidazole accounting for approximately 20% of the total. Renal clearance of metronidazole is approximately 10 mL/min/1.73m2. Metronidazole is the major component appearing in the plasma, with lesser quantities of the 2-hydroxymethyl metabolite also being present. Less than 20% of the circulating metronidazole is bound to plasma proteins. Both the parent compound and the metabolite possess in vitro bactericidal activity against most strains of anaerobic bacteria and in vitro trichomonacidal activity.
    [Show full text]
  • Finegoldia Magna Resistance Rates of Bacteroides Strains in Three Europe-Wide Studies (ESGARAB)
    Trends in antibiotic resistance among anaerobic bacteria and their clinical significance Elisabeth Nagy MD, PhD, DSc Institute of Clinical Microbiology, University of Szeged, Hungary National Reference Laboratory for Anaerobes 1st National Clinical Microbiology Congress of Turkey Antalya, November 12-16, 2011 Infections caused by anaerobic bacteria Seldom exogenous (gas gangrene, tetanus, botulism) Mixed infections involving aerobic and anaerobic bacteria are endogenous (post surgical intraabdominal, pelvic, oral infections, etc.) Members of the normal flora are involved Monobacterial anaerobic infections also occur (Bacteroides, Fusobacterium, etc. sepsis) Anaerobic bacteria can cause infection in all organs or tissues (brain abscess, endocarditis, endophtalmitis, prostatitis, etc.) C. difficile infection (CDI) (most important nosocomial enteric disease to day) Key points to be successful in isolation of anaerobes - Take sample if you think on anaerobic infection Clinicians - Avoid contamination with the normal flora - Send it to the laboratory in an anaerobic environment (anaerobic transport systems) - Process the sample as soon as possible - Use special media Laboratories - Use proper anaerobic environment for incubation - Identification and resistance determination may be time consuming Proper anaerobic environment is the prerequisite for isolation of anaerobic pathogens Gaspack system Anaerobic chamber Anaerobic plastic-bag system Identification of anaerobic bacteria Essential changes in taxonomy during the past 20 years
    [Show full text]
  • Update on Detection of Bacteremia and Fungemia
    CLINICAL MICROBIOLOGY REVIEWS, July 1997, p. 444–465 Vol. 10, No. 3 0893-8512/97/$04.0010 Copyright © 1997, American Society for Microbiology Update on Detection of Bacteremia and Fungemia 1,2,3 4,5 6,7,8 LARRY G. REIMER, * MICHAEL L. WILSON, AND MELVIN P. WEINSTEIN Microbiology Laboratory, Department of Veterans Affairs Medical Center,1 and Departments of Pathology2 and Medicine,3 University of Utah School of Medicine, Salt Lake City, Utah 84148; Department of Pathology and Laboratory Service, Denver Health & Hospitals, Denver, Colorado 802044; Department of Pathology, University of Colorado School of Medicine, Denver, Colorado 802625; Microbiology Laboratory, Robert Wood Johnson University Hospital,6 and Departments of Medicine7 and Pathology,8 University of Medicine and Dentistry of New Jersey—Robert Wood Johnson Medical School, New Brunswick, New Jersey 08901 INTRODUCTION .......................................................................................................................................................445 CLINICAL IMPORTANCE OF BLOOD CULTURES..........................................................................................445 Pathophysiology of Bacteremia and Fungemia...................................................................................................445 Clinical Patterns of Bacteremia and Fungemia .................................................................................................445 Sources of Bacteremia and Fungemia .................................................................................................................445
    [Show full text]
  • Lecture 9 Anaerobic Bacteria • Important • Term • Extra ExplanaOn • AddiOnal Notes Objectives
    هذا العمل ل يغني عن الرجع الساسي للمذاكرة Lecture 9 Anaerobic Bacteria • Important • Term • Extra explanaon • Addi7onal notes Objectives • Describe anaerobic bacteria including their sensitivity to oxygen and where they may be found in the environment and the human body. • Differentiate the various types of anaerobes with regard to atmospheric requirement (i.e. obligate anaerobes, Faculative anaerobes and aerotolerent anaerobes. • Describe how anaerobes, as part of endogenous microbiota, initiate and establish infection. • Name the endogenous anaerobes commonly involved in human infection. • Recognize specimens that are acceptable and unacceptable for anaerobic culture. • Give the clues(sign and manifestations) to anaerobic infection, name the most probable etiologic agents of the following(Wound botulism, gas gangrene, tetanus, Actinomycosis, Pseudomembranous colitis and bacterial vaginosis) • Describe the microscopic and colony morphology and the results of differentiating anaerobic isolates. • Discuss antimicrobial susceptibility testing of anaerobes including methods and antimicrobial agents to be tested. • Describe the major approaches to treat anaerobic-associated diseases either medical or surgical. Need oxygen Are poisoned Need oxygen because they An organism that because they cannot by oxygen, so cannot ferment or respire makes ATP by ferment or respire they gather at anaerobically. However, aerobic respiration if anaerobically. They the bottom of they are poisoned by high oxygen is present, gather at the top of the tube concentrations of oxygen. but is capable of the tube where the where the They gather in the upper switching to oxygen oxygen part of the test tube but fermentation or concentration is concentration not the very top. anaerobic respiration highest. is lowest. if oxygen is absent.
    [Show full text]
  • Aspiration Pneumonia
    The new england journal of medicine Review Article Dan L. Longo, M.D., Editor Aspiration Pneumonia Lionel A. Mandell, M.D., and Michael S. Niederman, M.D.​​ spiration pneumonia is best considered not as a distinct entity From McMaster University, Hamilton, but as part of a continuum that also includes community- and hospital- ON, Canada (L.A.M.); and Weill Cornell Medical College, New York (M.S.N.). Ad- acquired pneumonias. It is estimated that aspiration pneumonia accounts dress reprint requests to Dr. Mandell at A lmandell@ mcmaster . ca. for 5 to 15% of cases of community-acquired pneumonia, but figures for hospital- 1 acquired pneumonia are unavailable. Robust diagnostic criteria for aspiration N Engl J Med 2019;380:651-63. pneumonia are lacking, and as a result, studies of this disorder include heteroge- DOI: 10.1056/NEJMra1714562 neous patient populations. Copyright © 2019 Massachusetts Medical Society. Aspiration of small amounts of oropharyngeal secretions is normal in healthy persons during sleep, yet microaspiration is also the major pathogenetic mecha- nism of most pneumonias.2 Large-volume aspiration (macroaspiration) of colo- nized oropharyngeal or upper gastrointestinal contents is the sine qua non of aspiration pneumonia. Variables affecting patient presentation and disease man- agement include bacterial virulence, the risk of repeated events, and the site of acquisition (nursing home, hospital, or community). According to this spectrum, patients labeled as having aspiration pneumonia usually represent a clinical phe- notype with risk factors for macroaspiration and involvement of characteristic anatomical pulmonary locations. Aspiration syndromes may involve the airways or pulmonary parenchyma, resulting in a variety of clinical presentations.3 This review focuses on aspiration involving the lung parenchyma, primarily aspiration pneumonia and chemical pneumonitis.
    [Show full text]