Revision Control (RCS, CVS, Git)
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Generating Commit Messages from Git Diffs
Generating Commit Messages from Git Diffs Sven van Hal Mathieu Post Kasper Wendel Delft University of Technology Delft University of Technology Delft University of Technology [email protected] [email protected] [email protected] ABSTRACT be exploited by machine learning. The hypothesis is that methods Commit messages aid developers in their understanding of a con- based on machine learning, given enough training data, are able tinuously evolving codebase. However, developers not always doc- to extract more contextual information and latent factors about ument code changes properly. Automatically generating commit the why of a change. Furthermore, Allamanis et al. [1] state that messages would relieve this burden on developers. source code is “a form of human communication [and] has similar Recently, a number of different works have demonstrated the statistical properties to natural language corpora”. Following the feasibility of using methods from neural machine translation to success of (deep) machine learning in the field of natural language generate commit messages. This work aims to reproduce a promi- processing, neural networks seem promising for automated commit nent research paper in this field, as well as attempt to improve upon message generation as well. their results by proposing a novel preprocessing technique. Jiang et al. [12] have demonstrated that generating commit mes- A reproduction of the reference neural machine translation sages with neural networks is feasible. This work aims to reproduce model was able to achieve slightly better results on the same dataset. the results from [12] on the same and a different dataset. Addition- When applying more rigorous preprocessing, however, the per- ally, efforts are made to improve upon these results by applying a formance dropped significantly. -
Introduction to Version Control with Git
Warwick Research Software Engineering Introduction to Version Control with Git H. Ratcliffe and C.S. Brady Senior Research Software Engineers \The Angry Penguin", used under creative commons licence from Swantje Hess and Jannis Pohlmann. March 12, 2018 Contents 1 About these Notes1 2 Introduction to Version Control2 3 Basic Version Control with Git4 4 Releases and Versioning 11 Glossary 14 1 About these Notes These notes were written by H Ratcliffe and C S Brady, both Senior Research Software Engineers in the Scientific Computing Research Technology Platform at the University of Warwick for a series of Workshops first run in December 2017 at the University of Warwick. This document contains notes for a half-day session on version control, an essential part of the life of a software developer. This work, except where otherwise noted, is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Li- cense. To view a copy of this license, visit http://creativecommons.org/ licenses/by-nc-nd/4.0/. The notes may redistributed freely with attribution, but may not be used for commercial purposes nor altered or modified. The Angry Penguin and other reproduced material, is clearly marked in the text and is not included in this declaration. The notes were typeset in LATEXby H Ratcliffe. Errors can be reported to [email protected] 1.1 Other Useful Information Throughout these notes, we present snippets of code and pseudocode, in particular snippets of commands for shell, make, or git. These often contain parts which you should substitute with the relevant text you want to use. -
Efficient Algorithms for Comparing, Storing, and Sharing
EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2012 Major Subject: Computer Science EFFICIENT ALGORITHMS FOR COMPARING, STORING, AND SHARING LARGE COLLECTIONS OF EVOLUTIONARY TREES A Dissertation by SUZANNE JUDE MATTHEWS Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Tiffani L. Williams Committee Members, Nancy M. Amato Jennifer L. Welch James B. Woolley Head of Department, Hank W. Walker May 2012 Major Subject: Computer Science iii ABSTRACT Efficient Algorithms for Comparing, Storing, and Sharing Large Collections of Evolutionary Trees. (May 2012) Suzanne Jude Matthews, B.S.; M.S., Rensselaer Polytechnic Institute Chair of Advisory Committee: Dr. Tiffani L. Williams Evolutionary relationships between a group of organisms are commonly summarized in a phylogenetic (or evolutionary) tree. The goal of phylogenetic inference is to infer the best tree structure that represents the relationships between a group of organisms, given a set of observations (e.g. molecular sequences). However, popular heuristics for inferring phylogenies output tens to hundreds of thousands of equally weighted candidate trees. Biologists summarize these trees into a single structure called the consensus tree. The central assumption is that the information discarded has less value than the information retained. But, what if this assumption is not true? In this dissertation, we demonstrate the value of retaining and studying tree collections. -
Higher Inductive Types (Hits) Are a New Type Former!
Git as a HIT Dan Licata Wesleyan University 1 1 Darcs Git as a HIT Dan Licata Wesleyan University 1 1 HITs 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory 2 Generator for 2 equality of equality HITs Homotopy Type Theory is an extension of Agda/Coq based on connections with homotopy theory [Hofmann&Streicher,Awodey&Warren,Voevodsky,Lumsdaine,Garner&van den Berg] Higher inductive types (HITs) are a new type former! They were originally invented[Lumsdaine,Shulman,…] to model basic spaces (circle, spheres, the torus, …) and constructions in homotopy theory But they have many other applications, including some programming ones! 2 Generator for 2 equality of equality Patches Patch a a 2c2 diff b d = < b c c --- > d 3 3 id a a b b -
Bluej Teamwork Repository Configuration
BlueJ Teamwork Repository Configuration Version 2.0 for BlueJ Version 2.5.0 (and 2.2.x) Davin McCall School of Engineering & IT, Deakin University 1 Introduction This document gives a brief description of how you might set up a version control repository for use with BlueJ’s teamwork features. It is intended mainly as a “quick start” guide and not as a complete reference – for that you should refer to the version control software documentation (i.e. the CVS manual or the Subversion manual) – but it does explain some BlueJ-specific concepts (such as how BlueJ supports the notion of student groups or teams). Setting up a repository usually requires a server to which you have “root” or administrator access. This may mean that you need to ask a Systems Administrator to set up the repository for you. Since BlueJ version 2.5.0, both Subversion and CVS are supported version control systems. BlueJ version 2.2.x supports only CVS. BlueJ versions prior to 2.2.0 did not support teamwork features. Chapters 2 and 3 explain how to set up and test a repository using CVS. Chapter 4 then covers the equivalent steps for using Subversion. 2 Setting up a simple single user CVS repository for testing the BlueJ teamwork features 2.1 Setting up the repository server On Unix / Linux / MacOS X: You must have the CVS software installed on the machine you intend to use as a server. There is a good chance that it is already installed, but if not, your vendor or distribution provider will almost certainly provide packages that can be installed. -
Homework 0: Account Setup for Course and Cloud FPGA Intro Questions
Cloud FPGA Homework 0 Fall 2019 Homework 0 Jakub Szefer 2019/10/20 Please follow the three setup sections to create BitBucket git repository, install LATEX tools or setup Overleaf account, and get access to the course's git repository. Once you have these done, answer the questions that follow. Submit your solutions as a single PDF file generated from a template; more information is at end in the Submission Instructions section. Setup BitBucket git Repository This course will use git repositories for code development. Each student should setup a free BitBucket (https://bitbucket.org) account and create a git repository for the course. Please make the repository private and give WRITE access to your instructor ([email protected]). Please send the URL address of the repository to the instructor by e-mail. Make sure there is a README:md file in the repository (access to the repository will be tested by a script that tries to download the README:md from the repository address you share). Also, if you are using a Apple computer, please add :gitignore file which contains one line: :DS Store (to prevent the hidden :DS Store files from accidentally being added to the repository). If you have problems accessing BitBucket git from the command line, please see the Appendix. Setup LATEX and Overleaf Any written work (including this homework's solutions) will be submitted as PDF files generated using LATEX [1] from provided templates. Students can setup a free Overleaf (https://www. overleaf.com) account to edit LATEX files and generate PDFs online; or students can install LATEX tools on their computer. -
Version Control – Agile Workflow with Git/Github
Version Control – Agile Workflow with Git/GitHub 19/20 November 2019 | Guido Trensch (JSC, SimLab Neuroscience) Content Motivation Version Control Systems (VCS) Understanding Git GitHub (Agile Workflow) References Forschungszentrum Jülich, JSC:SimLab Neuroscience 2 Content Motivation Version Control Systems (VCS) Understanding Git GitHub (Agile Workflow) References Forschungszentrum Jülich, JSC:SimLab Neuroscience 3 Motivation • Version control is one aspect of configuration management (CM). The main CM processes are concerned with: • System building • Preparing software for releases and keeping track of system versions. • Change management • Keeping track of requests for changes, working out the costs and impact. • Release management • Preparing software for releases and keeping track of system versions. • Version control • Keep track of different versions of software components and allow independent development. [Ian Sommerville,“Software Engineering”] Forschungszentrum Jülich, JSC:SimLab Neuroscience 4 Motivation • Keep track of different versions of software components • Identify, store, organize and control revisions and access to it • Essential for the organization of multi-developer projects is independent development • Ensure that changes made by different developers do not interfere with each other • Provide strategies to solve conflicts CONFLICT Alice Bob Forschungszentrum Jülich, JSC:SimLab Neuroscience 5 Content Motivation Version Control Systems (VCS) Understanding Git GitHub (Agile Workflow) References Forschungszentrum Jülich, -
Revision Control
Revision Control Tomáš Kalibera, (Peter Libič) Department of Distributed and Dependable Systems http://d3s.mff.cuni.cz CHARLES UNIVERSITY PRAGUE Faculty of Mathematics and Physics Problems solved by revision control What is it good for? Keeping history of system evolution • What a “system” can be . Source code (single file, source tree) . Textual document . In general anything what can evolve – can have versions • Why ? . Safer experimentation – easy reverting to an older version • Additional benefits . Tracking progress (how many lines have I added yesterday) . Incremental processing (distributing patches, …) Allowing concurrent work on a system • Why concurrent work ? . Size and complexity of current systems (source code) require team work • How can concurrent work be organized ? 1. Independent modifications of (distinct) system parts 2. Resolving conflicting modifications 3. Checking that the whole system works . Additional benefits . Evaluating productivity of team members Additional benefits of code revision control • How revision control helps . Code is isolated at one place (no generated files) . Notifications when a new code version is available • Potential applications that benefit . Automated testing • Compile errors, functional errors, performance regressions . Automated building . Backup • Being at one place, the source is isolated from unneeded generated files . Code browsing • Web interface with hyperlinked code Typical architecture Working copy Source code repository (versioned sources) synchronization Basic operations • Check-out . Create a working copy of repository content • Update . Update working copy using repository (both to latest and historical version) • Check-in (Commit) . Propagate working copy back to repository • Diff . Show differences between two versions of source code Simplified usage scenario Source code Check-out or update repository Working 1 copy 2 Modify & Test Check-in 3 Exporting/importing source trees • Import . -
FAKULTÄT FÜR INFORMATIK Leveraging Traceability Between Code and Tasks for Code Reviews and Release Management
FAKULTÄT FÜR INFORMATIK DER TECHNISCHEN UNIVERSITÄT MÜNCHEN Master’s Thesis in Informatics Leveraging Traceability between Code and Tasks for Code Reviews and Release Management Jan Finis FAKULTÄT FÜR INFORMATIK DER TECHNISCHEN UNIVERSITÄT MÜNCHEN Master’s Thesis in Informatics Leveraging Traceability between Code and Tasks for Code Reviews and Release Management Einsatz von Nachvollziehbarkeit zwischen Quellcode und Aufgaben für Code Reviews und Freigabemanagement Author: Jan Finis Supervisor: Prof. Bernd Brügge, Ph.D. Advisors: Maximilian Kögel, Nitesh Narayan Submission Date: May 18, 2011 I assure the single-handed composition of this master’s thesis only supported by declared resources. Sydney, May 10th, 2011 Jan Finis Acknowledgments First, I would like to thank my adviser Maximilian Kögel for actively supporting me with my thesis and being reachable for my frequent issues even at unusual times and even after he left the chair. Furthermore, I would like to thank him for his patience, as the surrounding conditions of my thesis, like me having an industrial internship and finishing my thesis abroad, were sometimes quite impedimental. Second, I want to thank my other adviser Nitesh Narayan for helping out after Max- imilian has left the chair. Since he did not advise me from the start, he had more effort working himself into my topic than any usual adviser being in charge of a thesis from the beginning on. Third, I want to thank the National ICT Australia for providing a workspace, Internet, and library access for me while I was finishing my thesis in Sydney. Finally, my thanks go to my supervisor Professor Bernd Brügge, Ph.D. -
Distributed Revision Control with Mercurial
Distributed revision control with Mercurial Bryan O’Sullivan Copyright c 2006, 2007 Bryan O’Sullivan. This material may be distributed only subject to the terms and conditions set forth in version 1.0 of the Open Publication License. Please refer to Appendix D for the license text. This book was prepared from rev 028543f67bea, dated 2008-08-20 15:27 -0700, using rev a58a611c320f of Mercurial. Contents Contents i Preface 2 0.1 This book is a work in progress ...................................... 2 0.2 About the examples in this book ..................................... 2 0.3 Colophon—this book is Free ....................................... 2 1 Introduction 3 1.1 About revision control .......................................... 3 1.1.1 Why use revision control? .................................... 3 1.1.2 The many names of revision control ............................... 4 1.2 A short history of revision control .................................... 4 1.3 Trends in revision control ......................................... 5 1.4 A few of the advantages of distributed revision control ......................... 5 1.4.1 Advantages for open source projects ............................... 6 1.4.2 Advantages for commercial projects ............................... 6 1.5 Why choose Mercurial? .......................................... 7 1.6 Mercurial compared with other tools ................................... 7 1.6.1 Subversion ............................................ 7 1.6.2 Git ................................................ 8 1.6.3 -
Scaling Git with Bitbucket Data Center
Scaling Git with Bitbucket Data Center Considerations for large teams switching to Git Contents What is Git, why do I want it, and why is it hard to scale? 01 Scaling Git with Bitbucket Data Center 05 What about compliance? 11 Why choose Bitbucket Data Center? 13 01 What is Git, why do I want it, and why is it hard to scale? So. Your software team is expanding and taking on more high-value projects. That’s great news! The bad news, however, is that your centralized version control system isn’t really cutting it anymore. For growing IT organizations, Some of the key benefits Codebase safety moving to a distributed version control system is now of adopting Git are: Git is designed with maintaining the integrity considered an inevitable shift. This paper outlines some of managed source code as a top priority, using secure algorithms to preserve your code, change of the benefits of Git as a distributed version control system history, and traceability against both accidental and how Bitbucket Data Center can help your company scale and malicious change. Distributed development its Git-powered operations smoothly. Community Distributed development gives each developer a working copy of the full repository history, Git has become the expected version control making development faster by speeding up systems in many circles, and is very popular As software development increases in complexity, and the commit process and reducing developers’ among open source projects. This means its easy development teams become more globalized, centralized interdependence, as well as their dependence to take advantage of third party libraries and on a network connection. -
Source Code Revision Control Systems and Auto-Documenting
Source Code Revision Control Systems and Auto-Documenting Headers for SAS® Programs on a UNIX or PC Multiuser Environment Terek Peterson, Alliance Consulting Group, Philadelphia, PA Max Cherny, Alliance Consulting Group, Philadelphia, PA ABSTRACT This paper discusses two free products available on UNIX and PC RCS, which is a more powerful utility than SCCS, was written in environments called SCCS (Source Code Control System) and early 1980s by Walter F. Tichy at Purdue University in Indiana. It RCS (Revision Control System). When used in a multi-user used many programs developed in the 1970s, learning from environment, these systems give programmers a tool to enforce mistakes of SCCS and can be seen as a logical improvement of change control, create versions of programs, document changes SCCS. Since RCS stores the latest version in full, it is much to programs, create backups during reporting efforts, and faster in retrieving the latest version. RCS is also faster than automatically update vital information directly within a SASâ SCCS in retrieving older versions and RCS has an easier program. These systems help to create an audit trail for interface for first time users. RCS commands are more intuitive programs as required by the FDA for a drug trial. than SCCS commands. In addition, there are less commands, the system is more consistent and it has a greater variety of options. Since RCS is a newer, more powerful source code INTRODUCTION control system, this paper will primarily focus on that system. The pharmaceutical industry is one of the most regulated industries in this country. Almost every step of a clinical trial is subject to very strict FDA regulations.