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Bacterial Communities of the Upper Respiratory Tract of Turkeys
www.nature.com/scientificreports OPEN Bacterial communities of the upper respiratory tract of turkeys Olimpia Kursa1*, Grzegorz Tomczyk1, Anna Sawicka‑Durkalec1, Aleksandra Giza2 & Magdalena Słomiany‑Szwarc2 The respiratory tracts of turkeys play important roles in the overall health and performance of the birds. Understanding the bacterial communities present in the respiratory tracts of turkeys can be helpful to better understand the interactions between commensal or symbiotic microorganisms and other pathogenic bacteria or viral infections. The aim of this study was the characterization of the bacterial communities of upper respiratory tracks in commercial turkeys using NGS sequencing by the amplifcation of 16S rRNA gene with primers designed for hypervariable regions V3 and V4 (MiSeq, Illumina). From 10 phyla identifed in upper respiratory tract in turkeys, the most dominated phyla were Firmicutes and Proteobacteria. Diferences in composition of bacterial diversity were found at the family and genus level. At the genus level, the turkey sequences present in respiratory tract represent 144 established bacteria. Several respiratory pathogens that contribute to the development of infections in the respiratory system of birds were identifed, including the presence of Ornithobacterium and Mycoplasma OTUs. These results obtained in this study supply information about bacterial composition and diversity of the turkey upper respiratory tract. Knowledge about bacteria present in the respiratory tract and the roles they can play in infections can be useful in controlling, diagnosing and treating commercial turkey focks. Next-generation sequencing has resulted in a marked increase in culture-independent studies characterizing the microbiome of humans and animals1–6. Much of these works have been focused on the gut microbiome of humans and other production animals 7–11. -
Ehrlichiosis in Brazil
Review Article Rev. Bras. Parasitol. Vet., Jaboticabal, v. 20, n. 1, p. 1-12, jan.-mar. 2011 ISSN 0103-846X (impresso) / ISSN 1984-2961 (eletrônico) Ehrlichiosis in Brazil Erliquiose no Brasil Rafael Felipe da Costa Vieira1; Alexander Welker Biondo2,3; Ana Marcia Sá Guimarães4; Andrea Pires dos Santos4; Rodrigo Pires dos Santos5; Leonardo Hermes Dutra1; Pedro Paulo Vissotto de Paiva Diniz6; Helio Autran de Morais7; Joanne Belle Messick4; Marcelo Bahia Labruna8; Odilon Vidotto1* 1Departamento de Medicina Veterinária Preventiva, Universidade Estadual de Londrina – UEL 2Departamento de Medicina Veterinária, Universidade Federal do Paraná – UFPR 3Department of Veterinary Pathobiology, University of Illinois 4Department of Veterinary Comparative Pathobiology, Purdue University, Lafayette 5Seção de Doenças Infecciosas, Hospital de Clínicas de Porto Alegre, Universidade Federal do Rio Grande do Sul – UFRGS 6College of Veterinary Medicine, Western University of Health Sciences 7Department of Clinical Sciences, Oregon State University 8Departamento de Medicina Veterinária Preventiva e Saúde Animal, Universidade de São Paulo – USP Received June 21, 2010 Accepted November 3, 2010 Abstract Ehrlichiosis is a disease caused by rickettsial organisms belonging to the genus Ehrlichia. In Brazil, molecular and serological studies have evaluated the occurrence of Ehrlichia species in dogs, cats, wild animals and humans. Ehrlichia canis is the main species found in dogs in Brazil, although E. ewingii infection has been recently suspected in five dogs. Ehrlichia chaffeensis DNA has been detected and characterized in mash deer, whereas E. muris and E. ruminantium have not yet been identified in Brazil. Canine monocytic ehrlichiosis caused by E. canis appears to be highly endemic in several regions of Brazil, however prevalence data are not available for several regions. -
Sexually Transmitted Infections: Diagnosis and Management
SEXUALLY TRANSMITTED INFECTIONS: DIAGNOSIS AND MANAGEMENT STEPHANIE N. TAYLOR, MD LSUHSC SECTION OF INFECTIOUS DISEASES MEDICAL DIRECTOR, DELGADO CENTER PERSONAL HEALTH CENTER NEW ORLEANS, LA INTRODUCTION Ê Tremendous Public Health Problem Ê AtitdAn estimated 15 m illion AiAmericans acqu ire an STD each year Ê $10 billion dollars in healthcare costs per year Ê Substantial morbidity/mortality Ê Ulcerative and non-ulcerative STDs associated with increased HIV transmission STI PRINCIPLES Ê Counseling – HIV infection, abstinence, and “safer sex” practices Ê STD Screening of asymptomatic individuals and those with symptoms Ê Patients with one STD often have another Ê Partners should be evaluated and treated empirically at the time of presentation STI PRINCIPLES Ê Serologic testing for syphilis should be done in all patients Ê HIV t esti ng sh ould be s trong ly encouraged in all patients (New CDC Recommendation for “Opt-Out” testing) Ê STDs are associated with HIV transmission Major STI Pathogens Ê Bacteria Ê Viruses Ê HSV I & II, HPV, Ê Neisseria HBV, HIV , gonorrhoeae, molluscum Haemophilus ducreyi, Ê Protozoa GdGardnere lla vag inali s Ê Trichomonas Ê Spirochetes vaginalis Ê Fungi Ê Treponema pa llidum Ê Candida albicans Ê Chlamydia Ê Ectoparasites Ê Chlamy dia Ê Phthiris pubis, trachomatis Sarcoptes scabei MAJOR STI SYNDROMES Ê GENITAL ULCER DISEASE Ê URETHRITIS/CERVICITIS Ê PELVIC INFLAMMATORY DISEASE Ê VAGINITIS Ê OTHER VIRAL STDs Ê ECTOPARASITES GENITAL ULCER DISEASE Differential Diagnosis: Ê STIs Ê Syphilis, Herpes, Chancroid Ê LGV, -
Tick-Borne Disease Working Group 2020 Report to Congress
2nd Report Supported by the U.S. Department of Health and Human Services • Office of the Assistant Secretary for Health Tick-Borne Disease Working Group 2020 Report to Congress Information and opinions in this report do not necessarily reflect the opinions of each member of the Working Group, the U.S. Department of Health and Human Services, or any other component of the Federal government. Table of Contents Executive Summary . .1 Chapter 4: Clinical Manifestations, Appendices . 114 Diagnosis, and Diagnostics . 28 Chapter 1: Background . 4 Appendix A. Tick-Borne Disease Congressional Action ................. 8 Chapter 5: Causes, Pathogenesis, Working Group .....................114 and Pathophysiology . 44 The Tick-Borne Disease Working Group . 8 Appendix B. Tick-Borne Disease Working Chapter 6: Treatment . 51 Group Subcommittees ...............117 Second Report: Focus and Structure . 8 Chapter 7: Clinician and Public Appendix C. Acronyms and Abbreviations 126 Chapter 2: Methods of the Education, Patient Access Working Group . .10 to Care . 59 Appendix D. 21st Century Cures Act ...128 Topic Development Briefs ............ 10 Chapter 8: Epidemiology and Appendix E. Working Group Charter. .131 Surveillance . 84 Subcommittees ..................... 10 Chapter 9: Federal Inventory . 93 Appendix F. Federal Inventory Survey . 136 Federal Inventory ....................11 Chapter 10: Public Input . 98 Appendix G. References .............149 Minority Responses ................. 13 Chapter 11: Looking Forward . .103 Chapter 3: Tick Biology, Conclusion . 112 Ecology, and Control . .14 Contributions U.S. Department of Health and Human Services James J. Berger, MS, MT(ASCP), SBB B. Kaye Hayes, MPA Working Group Members David Hughes Walker, MD (Co-Chair) Adalbeto Pérez de León, DVM, MS, PhD Leigh Ann Soltysiak, MS (Co-Chair) Kevin R. -
Sexually Transmitted Infections Treatment Guidelines, 2021
Morbidity and Mortality Weekly Report Recommendations and Reports / Vol. 70 / No. 4 July 23, 2021 Sexually Transmitted Infections Treatment Guidelines, 2021 U.S. Department of Health and Human Services Centers for Disease Control and Prevention Recommendations and Reports CONTENTS Introduction ............................................................................................................1 Methods ....................................................................................................................1 Clinical Prevention Guidance ............................................................................2 STI Detection Among Special Populations ............................................... 11 HIV Infection ......................................................................................................... 24 Diseases Characterized by Genital, Anal, or Perianal Ulcers ............... 27 Syphilis ................................................................................................................... 39 Management of Persons Who Have a History of Penicillin Allergy .. 56 Diseases Characterized by Urethritis and Cervicitis ............................... 60 Chlamydial Infections ....................................................................................... 65 Gonococcal Infections ...................................................................................... 71 Mycoplasma genitalium .................................................................................... 80 Diseases Characterized -
Human Anaplasmosis and Anaplasma Ovis Variant
LETTERS Human teria. A chest radiograph, computed ware (www.ebi.ac.uk/Tools/clustalw2/ tomography of the abdomen, and an index.html) and the GenBank/Europe- Anaplasmosis and echocardiograph of the heart showed an Molecular Biology database library Anaplasma ovis unremarkable results. Blood samples (http://blast.ncbi.nlm.nih.gov/Blast. Variant were negative for antibodies against cgi). Phylogenetic trees were con- cytomegalovirus, Epstein-Barr virus, structed by using MEGA 4 software To the Editor: Anaplasmosis is a hepatitis, HIV, mycoplasma, coxackie (www.megasoftware.net). disease caused by bacteria of the genus virus, adenovirus, parvovirus, Cox- The fi rst blood sample was posi- Anaplasma. A. marginale, A. centrale, iella burnetii, R. conorii, and R. typhi, tive for A. ovis by PCR; the other 2 A. phagocytophilum, A. ovis, A. bovis, and for rheumatoid factors. A lymph were negative. A 16S rRNA gene se- and A. platys are obligate intracellular node biopsy specimen was negative quence (EU448141) from the posi- bacteria that infect vertebrate and in- for infi ltration and malignancy. After tive sample showed 100% similarity vertebrate host cells. A. ovis, which is treatment with doxycycline (200 mg/ with other Anaplasma spp. sequences transmitted primarily by Rhipicepha- day for 11 days), ceftriaxone (2 g/day (A. marginale, A. centrale, A. ovis) lus bursa ticks, is an intraerythrocytic for 5 days), and imipenem/cilastatin in GenBank. Anaplasma sp. groEL rickettsial pathogen of sheep, goats, (1,500 mg/day for 1 day), the patient and msp4 genes showed a 1,650-bp and wild ruminants (1). recovered and was discharged 17 days sequence (FJ477840, corresponding Anaplasma spp. -
Sexually Transmitted Diseases Treatment Guidelines, 2015
Morbidity and Mortality Weekly Report Recommendations and Reports / Vol. 64 / No. 3 June 5, 2015 Sexually Transmitted Diseases Treatment Guidelines, 2015 U.S. Department of Health and Human Services Centers for Disease Control and Prevention Recommendations and Reports CONTENTS CONTENTS (Continued) Introduction ............................................................................................................1 Gonococcal Infections ...................................................................................... 60 Methods ....................................................................................................................1 Diseases Characterized by Vaginal Discharge .......................................... 69 Clinical Prevention Guidance ............................................................................2 Bacterial Vaginosis .......................................................................................... 69 Special Populations ..............................................................................................9 Trichomoniasis ................................................................................................. 72 Emerging Issues .................................................................................................. 17 Vulvovaginal Candidiasis ............................................................................. 75 Hepatitis C ......................................................................................................... 17 Pelvic Inflammatory -
Tick-Borne Diseases Other Than Lyme Increasing Awareness
Rocky Mountain Spotted Fever (RMSF) TREATMENT: This infectious disease can be treated effectively with antibiotics, including Tick-Borne Diseases ORGANISM: doxycycline or IV gentamicin, if diagnosed early. Rickettsia is a genus of intracellular bacteria that causes the infections RMSF other than Lyme and associated Rickettsial Spotted Fevers. R. rickettsii is the species responsible Mycoplasmas for RMSF What You Need To Know ORGANISM: VECTOR & DISTRIBUTION: Mycoplasmas are small, self-replicating organisms found as both commensal and Primary vectors include the Rocky Mountain Wood Tick, the American Dog Tick pathogenic bacteria in humans. and the Brown Dog Tick. Therefore, the area at risk includes the entire continental POWV frequently progresses to encephalitis and/or meningitis, which typically leads United States and Mexico. to chronic neurological deficit or death. VECTOR & DISTRIBUTION: Mycoplasma species are distributed throughout the United States. Direct exposure is SYMPTOMS: DIAGNOSIS: the most accepted method of transmission. Certain Mycoplasma species, particularly Early symptoms of RMSF include: POWV diagnosis requires a detailed history of possible exposure, signs and M. fermentans, have been identified in blood-sucking arthropods, including Ixodes • Fever • Headache • Nausea/Vomiting/Anorexia • Myalgia • Abdominal pain symptoms – and a high clinical suspicion. As the virus is contained in the tick’s saliva, ticks. Reactivation is possible when the immune system is under attack, such as with transmission can occur within minutes of a bite. Confirmation by laboratory testing Borrelia infection. RMSF is the most severe of the rickettsiosis in the United States and can be rapidly may include both blood and spinal fluid. progressive. SYMPTOMS: TREATMENT: Early systemic symptoms include fatigue and myalgias. -
Mycoplasma: How to Deal with a Persistent and Ubiquitous Pathogen Poultry Just Like All Animals Can Get Sick from Various Bacter
Mycoplasma: How to Deal with a Persistent and Ubiquitous Pathogen Poultry just like all animals can get sick from various bacterial, viral and parasitic pathogens. Fortunately most poultry can recover from an infection and return to normal health via their immune systems and if necessary the judicious use of antibiotics if treating a bacterial infection. Unfortunately, some disease causing organisms persist in these “recovered” poultry and hence the birds can be reservoirs of the pathogenic organisms. Consequently, the remainder of your flock may become infected if exposed to this “recovered” bird. Unfortunately this is often the case when dealing with the pathogenic bacteria Mycoplasma. Understanding these types of subtitles is essential toward keeping a healthy flock and reducing the risk of Mycoplasma infection. Mycoplasma is a very challenging disease for backyard poultry owners and especially people who have breeding flocks because the only way to eliminate it with 100% certainty is via 1. culling or 2. testing and culling of breeding hens. There are other approaches which can also be considered which do not provide 100% certainty but may be appropriate depending on the circumstances. Many responsible breeders and non-breeders get a diagnosis and then are confused on what they “should do.” This article attempts to provide a relevant background of Mycoplasma in poultry and then provides several options that a poultry owner may want to consider when dealing with a positive flock. Know your enemy: What are the clinical signs of a Mycoplasma Infection? In general, infections from Mycoplasma cause significant acute and chronic respiratory disease (i.e. -
Adrenal Gland Hemorrhage in Patients with Fatal Bacterial Infections
Modern Pathology (2008) 21, 1113–1120 & 2008 USCAP, Inc All rights reserved 0893-3952/08 $30.00 www.modernpathology.org Adrenal gland hemorrhage in patients with fatal bacterial infections Jeannette Guarner1, Christopher D Paddock2, Jeanine Bartlett2 and Sherif R Zaki2 1Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA and 2Infectious Diseases Pathology Branch, Division of Viral and Rickettsial Diseases, Center for Disease Control and Prevention, Atlanta, GA, USA A wide spectrum of adrenal gland pathology is seen during bacterial infections. Hemorrhage is particularly associated with meningococcemia, while abscesses have been described with several neonatal infections. We studied adrenal gland histopathology of 65 patients with bacterial infections documented in a variety of tissues by using immunohistochemistry. The infections diagnosed included Neisseria meningitidies, group A streptococcus, Rickettsia rickettsii, Streptococcus pneumoniae, Staphylococcus aureus, Ehrlichia sp., Bacillus anthracis, Leptospira sp., Clostridium sp., Klebsiella sp., Legionella sp., Yersinia pestis, and Treponema pallidum. Bacteria were detected in the adrenal of 40 (61%) cases. Adrenal hemorrhage was present in 39 (60%) cases. Bacteria or bacterial antigens were observed in 31 (79%) of the cases with adrenal hemorrhage including 14 with N. meningitidis, four with R. rickettsii, four with S. pneumoniae, three with group A streptococcus, two with S. aureus, two with B. anthracis, one with T. pallidum, and one with Legionella sp. Bacterial antigens were observed in nine of 26 non-hemorrhagic adrenal glands that showed inflammatory foci (four cases), edema (two cases), congestion (two cases), or necrosis (one case). Hemorrhage is the most frequent adrenal gland pathology observed in fatal bacterial infections. -
Infectious Organisms of Ophthalmic Importance
INFECTIOUS ORGANISMS OF OPHTHALMIC IMPORTANCE Diane VH Hendrix, DVM, DACVO University of Tennessee, College of Veterinary Medicine, Knoxville, TN 37996 OCULAR BACTERIOLOGY Bacteria are prokaryotic organisms consisting of a cell membrane, cytoplasm, RNA, DNA, often a cell wall, and sometimes specialized surface structures such as capsules or pili. Bacteria lack a nuclear membrane and mitotic apparatus. The DNA of most bacteria is organized into a single circular chromosome. Additionally, the bacterial cytoplasm may contain smaller molecules of DNA– plasmids –that carry information for drug resistance or code for toxins that can affect host cellular functions. Some physical characteristics of bacteria are variable. Mycoplasma lack a rigid cell wall, and some agents such as Borrelia and Leptospira have flexible, thin walls. Pili are short, hair-like extensions at the cell membrane of some bacteria that mediate adhesion to specific surfaces. While fimbriae or pili aid in initial colonization of the host, they may also increase susceptibility of bacteria to phagocytosis. Bacteria reproduce by asexual binary fission. The bacterial growth cycle in a rate-limiting, closed environment or culture typically consists of four phases: lag phase, logarithmic growth phase, stationary growth phase, and decline phase. Iron is essential; its availability affects bacterial growth and can influence the nature of a bacterial infection. The fact that the eye is iron-deficient may aid in its resistance to bacteria. Bacteria that are considered to be nonpathogenic or weakly pathogenic can cause infection in compromised hosts or present as co-infections. Some examples of opportunistic bacteria include Staphylococcus epidermidis, Bacillus spp., Corynebacterium spp., Escherichia coli, Klebsiella spp., Enterobacter spp., Serratia spp., and Pseudomonas spp. -
Doxycycline Failure Treatment of Lymphogranuloma Venereum Frédéric Méchaï, Bertille De Barbeyrac, Olivier Aoun, Audrey Merens, Patrick Imbert, Christophe Rapp
Doxycycline Failure Treatment of Lymphogranuloma venereum Frédéric Méchaï, Bertille de Barbeyrac, Olivier Aoun, Audrey Merens, Patrick Imbert, Christophe Rapp To cite this version: Frédéric Méchaï, Bertille de Barbeyrac, Olivier Aoun, Audrey Merens, Patrick Imbert, et al.. Doxy- cycline Failure Treatment of Lymphogranuloma venereum. Sexually Transmitted Infections, BMJ Publishing Group, 2010, 86 (4), pp.278. 10.1136/sti.2009.042093. hal-00557470 HAL Id: hal-00557470 https://hal.archives-ouvertes.fr/hal-00557470 Submitted on 19 Jan 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Doxycycline Failure in Lymphogranuloma venereum 1Frédéric Méchaï, 2Bertille de Barbeyrac, 1Olivier Aoun, 3Audrey Mérens, 1Patrick Imbert et 1Christophe Rapp. 1Service des maladies infectieuses et tropicales, Hôpital d’instruction des Armées Bégin, 94160 Saint Mandé, France 2Centre National de Référence des Chlamydiae, Laboratoire de bactériologie, Université Victor Segalen, 33076 Bordeaux, France. 3Service de biologie clinique, Hôpital d’instruction des Armées Bégin, 94160 Saint Mandé, France Corresponding author: Dr Frédéric Méchaï E-mail : [email protected] Abstract The number of Lymphogranuloma venereum (LGV) cases is currently reemerging in the homosexual community, particularly in HIV seropositive patients. The standard treatment for this infection caused by Chlamydia trachomatis L1, L2 and L3 serotypes is a 3 week doxycycline regime.