Chapter 4 Emerging Macroinvertebrate Distribution, Abundance and Habitat Use
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												  Data Quality, Performance, and Uncertainty in Taxonomic Identification for Biological AssessmentsJ. N. Am. Benthol. Soc., 2008, 27(4):906–919 Ó 2008 by The North American Benthological Society DOI: 10.1899/07-175.1 Published online: 28 October 2008 Data quality, performance, and uncertainty in taxonomic identification for biological assessments 1 2 James B. Stribling AND Kristen L. Pavlik Tetra Tech, Inc., 400 Red Brook Blvd., Suite 200, Owings Mills, Maryland 21117-5159 USA Susan M. Holdsworth3 Office of Wetlands, Oceans, and Watersheds, US Environmental Protection Agency, 1200 Pennsylvania Ave., NW, Mail Code 4503T, Washington, DC 20460 USA Erik W. Leppo4 Tetra Tech, Inc., 400 Red Brook Blvd., Suite 200, Owings Mills, Maryland 21117-5159 USA Abstract. Taxonomic identifications are central to biological assessment; thus, documenting and reporting uncertainty associated with identifications is critical. The presumption that comparable results would be obtained, regardless of which or how many taxonomists were used to identify samples, lies at the core of any assessment. As part of a national survey of streams, 741 benthic macroinvertebrate samples were collected throughout the eastern USA, subsampled in laboratories to ;500 organisms/sample, and sent to taxonomists for identification and enumeration. Primary identifications were done by 25 taxonomists in 8 laboratories. For each laboratory, ;10% of the samples were randomly selected for quality control (QC) reidentification and sent to an independent taxonomist in a separate laboratory (total n ¼ 74), and the 2 sets of results were compared directly. The results of the sample-based comparisons were summarized as % taxonomic disagreement (PTD) and % difference in enumeration (PDE). Across the set of QC samples, mean values of PTD and PDE were ;21 and 2.6%, respectively.
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												  List of Animal Species with Ranks October 2017Washington Natural Heritage Program List of Animal Species with Ranks October 2017 The following list of animals known from Washington is complete for resident and transient vertebrates and several groups of invertebrates, including odonates, branchipods, tiger beetles, butterflies, gastropods, freshwater bivalves and bumble bees. Some species from other groups are included, especially where there are conservation concerns. Among these are the Palouse giant earthworm, a few moths and some of our mayflies and grasshoppers. Currently 857 vertebrate and 1,100 invertebrate taxa are included. Conservation status, in the form of range-wide, national and state ranks are assigned to each taxon. Information on species range and distribution, number of individuals, population trends and threats is collected into a ranking form, analyzed, and used to assign ranks. Ranks are updated periodically, as new information is collected. We welcome new information for any species on our list. Common Name Scientific Name Class Global Rank State Rank State Status Federal Status Northwestern Salamander Ambystoma gracile Amphibia G5 S5 Long-toed Salamander Ambystoma macrodactylum Amphibia G5 S5 Tiger Salamander Ambystoma tigrinum Amphibia G5 S3 Ensatina Ensatina eschscholtzii Amphibia G5 S5 Dunn's Salamander Plethodon dunni Amphibia G4 S3 C Larch Mountain Salamander Plethodon larselli Amphibia G3 S3 S Van Dyke's Salamander Plethodon vandykei Amphibia G3 S3 C Western Red-backed Salamander Plethodon vehiculum Amphibia G5 S5 Rough-skinned Newt Taricha granulosa
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												  Chironominae 8.1CHIRONOMINAE 8.1 SUBFAMILY CHIRONOMINAE 8 DIAGNOSIS: Antennae 4-8 segmented, rarely reduced. Labrum with S I simple, palmate or plumose; S II simple, apically fringed or plumose; S III simple; S IV normal or sometimes on pedicel. Labral lamellae usually well developed, but reduced or absent in some taxa. Mentum usually with 8-16 well sclerotized teeth; sometimes central teeth or entire mentum pale or poorly sclerotized; rarely teeth fewer than 8 or modified as seta-like projections. Ventromental plates well developed and usually striate, but striae reduced or vestigial in some taxa; beard absent. Prementum without dense brushes of setae. Body usually with anterior and posterior parapods and procerci well developed; setal fringe not present, but sometimes with bifurcate pectinate setae. Penultimate segment sometimes with 1-2 pairs of ventral tubules; antepenultimate segment sometimes with lateral tubules. Anal tubules usually present, reduced in brackish water and marine taxa. NOTESTES: Usually the most abundant subfamily (in terms of individuals and taxa) found on the Coastal Plain of the Southeast. Found in fresh, brackish and salt water (at least one truly marine genus). Most larvae build silken tubes in or on substrate; some mine in plants, dead wood or sediments; some are free- living; some build transportable cases. Many larvae feed by spinning silk catch-nets, allowing them to fill with detritus, etc., and then ingesting the net; some taxa are grazers; some are predacious. Larvae of several taxa (especially Chironomus) have haemoglobin that gives them a red color and the ability to live in low oxygen conditions. With only one exception (Skutzia), at the generic level the larvae of all described (as adults) southeastern Chironominae are known.
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												  &WILDLIFE Tlmber/FISH/WILDLIFE ECOREGION BIOASSESSMENT53 TFW-WQl l-92-001 &WILDLIFE TlMBER/FISH/WILDLIFE ECOREGION BIOASSESSMENT PILOT PROJECT July 1992 Ecology Publica.tion No. 92-63 prinred on recycled paper The Department of Ecology is an Equal Opportunity and Ajinnative Action employer and shall not discriminate on the basis of race, creed, color, national origin, sex, marital status, sexual orientation, age, religion, or disability as defined by applicable state and/orfederal regulations or statutes. If you have special accommodation needs, please contact the Environmental Investigations and Laboratory Services Program, Wutershed Assessments Section, Barbara Tovrea at (206) 407-6696 (voice). Ecology’s telecommunications device for the deaf (TDD) number at Ecology Headquarters is (206) 407-6006. For additional copies of this publication, please contact: Department of Ecology Publications Disttibutions Ofice at P. 0. Box 47600 Olympia, Washington 98504-7600 (206) 407-7472 Refer to Publication Number 92-6.3 WASHINGTON STATE DEPARTMENT OF ECOLOGY &WILDLIFE TIMBER/FISH/WILDLIFE ECOREGION BIOASSESSMENT PILOT PROJECT by Robert W. Plotnikoff Washington State Department of Ecology Environmental Investigations and Laboratory Services Program Watershed Assessments Section Olympia, Washington 98504-7710 July 1.992 TABLE OF C:ONTENTS LISTOFTABLES . ..iii LIST OF FIGURES . ” . I ,, I . iv ACKNOWLEDGEMENTS .................................... vi ABSTRACT ........................................... .v ii INTRODUCTION Biological Assessment ................................... 1 Integration of Monitoring
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												  Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely UOhio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al.
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												  A Guide for the Identification of Two Subfamilies of Larval ChironomidaeEnvlronment Canada Environnement Canada Fisheries Service des pêches .1 and Marine Service et des sciences de la mer L .' 1 '; ( 1 l r A Guide for the Identification of Two Subfamil ies of Larval Chironomidae: ,1"'--- The Chironominae and Tanypodlnae . : - - . ) / Found .in Benthic Studies Jin the / r~---.-_ c L___ r - - '" - .Ç"'''''-. Winnipeg River in the Vicinity ot Pine Falls, Manitoba in 1971 and 1972 by P. L. Stewart J.S. Loch Technical Report Series No. CEN/T-73-12 Resource Management Branch Central Region DEPARTMÈNT OF THE ENViRONMENT FISHERIES AND MARINE SERViCE Fisheries Operations Directorate Central Region Technical Reports Series No. CEN/T-73-12 A guide for the identification of two subfami lies of larva l Chironomidae~ the Chironominae and Tanypodinae found in benthic studies in the Winnipeg Riv~r in the vicinity of Pine Falls, Manitoba, in 1971 and 1972. by: P.L. Stewart qnd J.S. Loch ERRATA Page13: The caption for Figure 5A should read: Mentum and ventromental plates..•... instead of: submentum and ventromental plates..•.. Page 14: The caption for Figure 5B should read: Mentum and ventromental plates . instead of: submentum and ventromental plates.... DEPARTMENT OF THE ENVIRONMENT FISHERIES AND MARINE SERVICE Fisheries Operations Directorate Central Region Technical Report Series No: CEN/T-73-12 A GUIDE FOR THE IDENTIFICATION OF IWO SUBF.AMILIES OF LARVM.... CHIRONOMIDAE: THE CHIRONOMINAE AND TANYPODINAE FOUND IN BENTHIC STUDIES IN THE WINNIPEG RIVER IN THE vrCINITY OF PINE FM....LS, MANITOBA IN 1971 and 1972 by P. L. Stewart and J. S. Loch Resource Management Branch Fisheries Operations Directorate Central Region, Winnipeg November 1973 i ABSTRACT Identifying characteristics of the genera of two subfamilies of larvae of the midge family, C~onomldae (Vlpt~a), the C~ono mlnae and the Tanypodlnae, are presented with illustrations for the purpose of simplifying identification of these two groups by novice and more experienced personnel involved in assessment of benthic faunal composition.
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												  Checklist of the Family Chironomidae (Diptera) of FinlandA peer-reviewed open-access journal ZooKeys 441: 63–90 (2014)Checklist of the family Chironomidae (Diptera) of Finland 63 doi: 10.3897/zookeys.441.7461 CHECKLIST www.zookeys.org Launched to accelerate biodiversity research Checklist of the family Chironomidae (Diptera) of Finland Lauri Paasivirta1 1 Ruuhikoskenkatu 17 B 5, FI-24240 Salo, Finland Corresponding author: Lauri Paasivirta ([email protected]) Academic editor: J. Kahanpää | Received 10 March 2014 | Accepted 26 August 2014 | Published 19 September 2014 http://zoobank.org/F3343ED1-AE2C-43B4-9BA1-029B5EC32763 Citation: Paasivirta L (2014) Checklist of the family Chironomidae (Diptera) of Finland. In: Kahanpää J, Salmela J (Eds) Checklist of the Diptera of Finland. ZooKeys 441: 63–90. doi: 10.3897/zookeys.441.7461 Abstract A checklist of the family Chironomidae (Diptera) recorded from Finland is presented. Keywords Finland, Chironomidae, species list, biodiversity, faunistics Introduction There are supposedly at least 15 000 species of chironomid midges in the world (Armitage et al. 1995, but see Pape et al. 2011) making it the largest family among the aquatic insects. The European chironomid fauna consists of 1262 species (Sæther and Spies 2013). In Finland, 780 species can be found, of which 37 are still undescribed (Paasivirta 2012). The species checklist written by B. Lindeberg on 23.10.1979 (Hackman 1980) included 409 chironomid species. Twenty of those species have been removed from the checklist due to various reasons. The total number of species increased in the 1980s to 570, mainly due to the identification work by me and J. Tuiskunen (Bergman and Jansson 1983, Tuiskunen and Lindeberg 1986).
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												  (Trichoptera: Limnephilidae) in Western North America ByAN ABSTRACT OF THE THESIS OF Robert W. Wisseman for the degree of Master ofScience in Entomology presented on August 6, 1987 Title: Biology and Distribution of the Dicosmoecinae (Trichoptera: Limnsphilidae) in Western North America Redacted for privacy Abstract approved: N. H. Anderson Literature and museum records have been reviewed to provide a summary on the distribution, habitat associations and biology of six western North American Dicosmoecinae genera and the single eastern North American genus, Ironoquia. Results of this survey are presented and discussed for Allocosmoecus,Amphicosmoecus and Ecclisomvia. Field studies were conducted in western Oregon on the life-histories of four species, Dicosmoecusatripes, D. failvipes, Onocosmoecus unicolor andEcclisocosmoecus scvlla. Although there are similarities between generain the general habitat requirements, the differences or variability is such that we cannot generalize to a "typical" dicosmoecine life-history strategy. A common thread for the subfamily is the association with cool, montane streams. However, within this stream category habitat associations range from semi-aquatic, through first-order specialists, to river inhabitants. In feeding habits most species are omnivorous, but they range from being primarilydetritivorous to algal grazers. The seasonal occurrence of the various life stages and voltinism patterns are also variable. Larvae show inter- and intraspecificsegregation in the utilization of food resources and microhabitatsin streams. Larval life-history patterns appear to be closely linked to seasonal regimes in stream discharge. A functional role for the various types of case architecture seen between and within species is examined. Manipulation of case architecture appears to enable efficient utilization of a changing seasonal pattern of microhabitats and food resources.
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												  Wetland Aquatic LifeMaine Department of Environmental Protection Biological Monitoring Program Wetland Aquatic Life Classification Attainment Report Station Information Station Number: W-134 Trip ID: 2005-134 River Basin: Saco Waterbody: SONGO POND INLET (UPSTREAM) HUC8 Name: Presumpscot Town: Bethel Latitude: 44 22 36.85 N Mitigation Monitoring Site: No Longitude: 70 48 44.76 W Sample Information Sample ID: DN-2005-134 Type of Sample: DIPNET Date Sampled: 7/7/2005 Subsample Factor: X1 Replicates: 3 Classification Attainment Statutory Class: AA Final Determination: A Date: 1/10/2013 Model Result with P ≥0.6: A Reason for Determination: Model Date Last Calculated: 5/15/2014 Comments: Model Probabilities First Stage Model C or Better Model Class A: 0.83 Class C: 0.00 Class A, B, or C 1.00 Class B: 0.17 NA: 0.00 Non-Attainment 0.00 B or Better Model A Model Class A or B 1.00 Class A 0.83 Class C or Non-Attainment 0.00 Class B or C or Non-Attainment 0.17 Model Variables Reference Range Total Mean Abundance 234 < 787 Ephemeroptera Abundance 3.33 most > 35 Odonata Relative Abundance 0.030 most > 0.04 Trichoptera Relative Abundance 0.020 most > 0.02 Shredder Taxa Relative Abundance 0.02 < 0.2 Non-insect Taxa Relative Richness 0.11 < 0.4 MTI Sensitive Taxa Abundance 51.67 most > 30 MTI Sensitive Taxa Relative Abundance 0.26 most > 0.05 MTI Sensitive Taxa Richness 6 most > 7 MTI Intermediate Taxa Relative Abundance 0.71 > 0.5 MTI Intermediate Taxa Richness 16 < 25 Ratio of MTI Sensitive to Eurytopic Taxa Abundance 8.16 most > 1 Other Variables Five Most Dominant Taxa Generic Richness: 37 Rank Taxon Name Percent Hilsenhoff Biotic Index: 7.74 1 Procladius 26.60 Shannon-Weiner Diversity: 3.96 2 Paratendipes 11.66 Maine Tolerance Index: 23.38 3 Cryptotendipes 7.54 4 Ablabesmyia 7.25 5 Tanytarsus 6.54 Tuesday, March 15, 2016 Page 1 Maine Department of Environmental Protection Biological Monitoring Program Wetland Aquatic Life Classification Attainment Report Sample Collection and Processing Information Sampling Organization: BIOMONITORING UNIT Taxonomist: LOTIC INC.
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												  Nearctic ChironomidaeAgriculture I*l Canada A catalog of Nearctic Chironomidae A catalog of Catalogue des Nearctic Chironomidae Chironomidae delardgion ndarctique D.R. Oliver and M.E. Dillon D.R. Oliver et M.E. Dillon Biosystematics Research Centre Centre de recherches biosyst6matiques Ottawa, Ontario Ottawa (Ontario) K1A 0C6 K1A 0C6 and et P.S. Cranston P.S. Cranston Commonwealth Scientific and Organisation de la recherche Industrial Research scientifique et industrielle du Organization, Entomology Commonwealth, Entomologie Canberra ACT 2601 Canberra ACT 2601 Australia Australie Research Branch Direction g6n6rale de la recherche Agriculture Canada Agriculture Canada Publication 185718 Publication 185718 1 990 1 990 @Minister of Supply and Services Canada 1990 oMinistre des Approvisionnement et Services Canada 1990 Available in Canada through En vente au Canada par I'entremise de nos Authorized Bookstore Agents agents libraires agr66s et autres and other bmkstores libraires. or by mail from ou par la poste au Canadian Govemnent Publishing Centre Centre d'6dition du gouvemement du Supply and Servies Canada Canada Oltawa, Canada K1A 0S9 Approvisionnements et Seryies Canada Ottawa (Canada) K1A 0S9 Cat No. A43-I85'7ll99O N" de cat A43-785117990 ISBN 0-660-55839-4 ISBN 0-660-55839-4 Price subject to change without notic€ Prix sujet i changemenl sans pr6avis Canadian Cataloguing in Publication Data Donn6ee de catalogage avant publication (Canada) Oliver, D.R. Oliver, D.R. A mtalog of Nearctic Chironomidae A atalog of Nearctic Chironomidae (Publication ; 1857/8) (Publiation ; 18578) Text in English and French- Texle en anglais et en frangais. Includes bibliographiel referenes. Comprend des r6f6rences bibliogr. Issued by Research Branch, Agriculture Canada.
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												  Bibliograp BibliographyBIBLIOGRAPHY 9.1 BIBLIOGRAPHY 9 Adam, J.I & O.A. Sæther. 1999. Revision of the records for the southern United States genus Nilothauma Kieffer, 1921 (Diptera: (Diptera: Chironomidae). J. Ga. Ent. Soc. Chironomidae). Ent. scand. Suppl. 56: 1- 15:69-73. 107. Beck, W.M., Jr. & E.C. Beck. 1966. Chironomidae Ali, A. 1991. Perspectives on management of pest- (Diptera) of Florida - I. Pentaneurini (Tany- iferous Chironomidae (Diptera), an emerg- podinae). Bull. Fla. St. Mus. Biol. Sci. ing global problem. J. Am. Mosq. Control 10:305-379. Assoc. 7: 260-281. Beck, W.M., Jr., & E.C. Beck. 1970. The immature Armitage, P., P.S. Cranston & L.C.V. Pinder (eds). stages of some Chironomini (Chiro- 1995. The Chironomidae. Biology and nomidae). Q.J. Fla. Acad. Sci. 33:29-42. ecology of non-biting midges. Chapman & Bilyj, B. 1984. Descriptions of two new species of Hall, London. 572 pp. Tanypodinae (Diptera: Chironomidae) from Ashe, P. 1983. A catalogue of chironomid genera Southern Indian Lake, Canada. Can. J. Fish. and subgenera of the world including syn- Aquat. Sci. 41: 659-671. onyms (Diptera: Chironomidae). Ent. Bilyj, B. 1985. New placement of Tanypus pallens scand. Suppl. 17: 1-68. Coquillett, 1902 nec Larsia pallens (Coq.) Barton, D.R., D.R. Oliver & M.E. Dillon. 1993. sensu Roback 1971 (Diptera: Chironomi- The first Nearctic record of Stackelbergina dae) and redescription of the holotype. Can. Shilova and Zelentsov (Diptera: Chironomi- Ent. 117: 39-42. dae): Taxonomic and ecological observations. Bilyj, B. 1988. A taxonomic review of Guttipelopia Aquatic Insects 15: 57-63. (Diptera: Chironomidae).
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												  DNA BarcodingFull-time PhD studies of Ecology and Environmental Protection Piotr Gadawski Species diversity and origin of non-biting midges (Chironomidae) from a geologically young lake PhD Thesis and its old spring system Performed in Department of Invertebrate Zoology and Hydrobiology in Institute of Ecology and Environmental Protection Różnorodność gatunkowa i pochodzenie fauny Supervisor: ochotkowatych (Chironomidae) z geologicznie Prof. dr hab. Michał Grabowski młodego jeziora i starego systemu źródlisk Auxiliary supervisor: Dr. Matteo Montagna, Assoc. Prof. Łódź, 2020 Łódź, 2020 Table of contents Acknowledgements ..........................................................................................................3 Summary ...........................................................................................................................4 General introduction .........................................................................................................6 Skadar Lake ...................................................................................................................7 Chironomidae ..............................................................................................................10 Species concept and integrative taxonomy .................................................................12 DNA barcoding ...........................................................................................................14 Chapter I. First insight into the diversity and ecology of non-biting midges (Diptera: Chironomidae)