Actin Has Multiple Roles in the Formation and Architecture of Zoospores of the Oomycetes, Saprolegnia Ferax and Achlya Bisexualis
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Mass Flow in Hyphae of the Oomycete Achlya Bisexualis
Mass flow in hyphae of the oomycete Achlya bisexualis A thesis submitted in partial fulfilment of the requirements for the Degree of Master of Science in Cellular and Molecular Biology in the University of Canterbury by Mona Bidanjiri University of Canterbury 2018 Abstract Oomycetes and fungi grow in a polarized manner through the process of tip growth. This is a complex process, involving extension at the apex of the cell and the movement of the cytoplasm forward, as the tip extends. The mechanisms that underlie this growth are not clearly understood, but it is thought that the process is driven by the tip yielding to turgor pressure. Mass flow, the process where bulk flow of material occurs down a pressure gradient, may play a role in tip growth moving the cytoplasm forward. This has previously been demonstrated in mycelia of the oomycete Achlya bisexualis and in single hypha of the fungus Neurospora crassa. Microinjected silicone oil droplets were observed to move in the predicted direction after the establishment of an imposed pressure gradient. In order to test for mass flow in a single hypha of A. bisexualis the work in this thesis describes the microinjection of silicone oil droplets into hyphae. Pressure gradients were imposed by the addition of hyperosmotic and hypoosmotic solutions to the hyphae. In majority of experiments, after both hypo- and hyperosmotic treatments, the oil droplets moved down the imposed gradient in the predicted direction. This supports the existence of mass flow in single hypha of A. bisexualis. The Hagen-Poiseuille equation was used to calculate the theoretical rate of mass flow occurring within the hypha and this was compared to observed rates. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Evolutionary Histories of Soil Fungi Are Reflected in Their Large
Ecology Letters, (2014) doi: 10.1111/ele.12311 LETTER Evolutionary histories of soil fungi are reflected in their large- scale biogeography Abstract Kathleen K. Treseder,1* Mia R. Although fungal communities are known to vary along latitudinal gradients, mechanisms underly- Maltz,1 Bradford A. Hawkins,1 ing this pattern are not well-understood. We used high-throughput sequencing to examine the Noah Fierer,2 Jason E. Stajich3 and large-scale distributions of soil fungi and their relation to evolutionary history. We tested the Trop- Krista L. McGuire4 ical Conservatism Hypothesis, which predicts that ancestral fungal groups should be more restricted to tropical latitudes and conditions than would more recently derived groups. We found support for this hypothesis in that older phyla preferred significantly lower latitudes and warmer, wetter conditions than did younger phyla. Moreover, preferences for higher latitudes and lower pre- cipitation levels were significantly phylogenetically conserved among the six younger phyla, possibly because the older phyla possess a zoospore stage that is vulnerable to drought, whereas the younger phyla retain protective cell walls throughout their life cycle. Our study provides novel evidence that the Tropical Conservatism Hypothesis applies to microbes as well as plants and animals. Keywords Latitude, phylum, precipitation, regular septa, snowball earth events, soil, temperature, traits, zoo- spore. Ecology Letters (2014) Here, we test predictions of TCH as they may apply to a INTRODUCTION group of organisms much older than those normally consid- Numerous studies have reported shifts in fungal community ered. The Earth’s paleoclimate was relatively warm and wet composition by latitude, temperature, and precipitation during the earliest evolution of ancestral fungi, whereas severe (Arnold & Lutzoni 2007; Tedersoo et al. -
The Taxonomy and Biology of Phytophthora and Pythium
Journal of Bacteriology & Mycology: Open Access Review Article Open Access The taxonomy and biology of Phytophthora and Pythium Abstract Volume 6 Issue 1 - 2018 The genera Phytophthora and Pythium include many economically important species Hon H Ho which have been placed in Kingdom Chromista or Kingdom Straminipila, distinct from Department of Biology, State University of New York, USA Kingdom Fungi. Their taxonomic problems, basic biology and economic importance have been reviewed. Morphologically, both genera are very similar in having coenocytic, hyaline Correspondence: Hon H Ho, Professor of Biology, State and freely branching mycelia, oogonia with usually single oospores but the definitive University of New York, New Paltz, NY 12561, USA, differentiation between them lies in the mode of zoospore differentiation and discharge. Email [email protected] In Phytophthora, the zoospores are differentiated within the sporangium proper and when mature, released in an evanescent vesicle at the sporangial apex, whereas in Pythium, the Received: January 23, 2018 | Published: February 12, 2018 protoplast of a sporangium is transferred usually through an exit tube to a thin vesicle outside the sporangium where zoospores are differentiated and released upon the rupture of the vesicle. Many species of Phytophthora are destructive pathogens of especially dicotyledonous woody trees, shrubs and herbaceous plants whereas Pythium species attacked primarily monocotyledonous herbaceous plants, whereas some cause diseases in fishes, red algae and mammals including humans. However, several mycoparasitic and entomopathogenic species of Pythium have been utilized respectively, to successfully control other plant pathogenic fungi and harmful insects including mosquitoes while the others utilized to produce valuable chemicals for pharmacy and food industry. -
Flagellar Structures of Zoospores of Some Fungi and Algae
I III I n II ‘ I I | II II I I II I I I A ,- I I FLAGELLAR STRUCTURES OF ZOOSPORES OF SOME FUNGI AND ALGAE THESIS FOR DEGREE OF MASTEh LF SCIENCE MICHIGAN STATE COLLEGE BERNARD ELLISON I944 THESIS This is to certify that the thesis entitled £;:lat7/LIUL“- z4:2:;;cjt;¢‘t :jj 2F4""%L’L“ <5 ,ALIhLL ,¢E¢4flfi}£~‘ap«a( 0p19‘vk presented by MW has been accepted towards fulfilment of the requirements for K“ g degree in W Major professo Date M (I /?/'/</ FIAGELLAR STRUC'IURES OF ZOOSPORES 01" SM FUNGI AND AIGAE by BERNARD 1I_*‘3“.I..I.ISOI\I A 1531313 Sutmitted to the Graduate School of Michigan State College of Agriculture and Applied Science in partial fulfilment of the requirements for the degree or MASTER OF SCIENCE Department of Botany and Plant Pathology THESIS ACKNCNLEDGSM’WT I should like to eXpress my appreciation to Dr. Ernst A. Bessey for suggesting this research problem and for his valuable aid and advice. His interest and encouragement have been a source of inspiration to me throughout the course of the investigation and his suggestions and criticisms have been most helpful. I should also like to thank Mr. John M. Roberts for many stimulating and valuable suggestions and for furnishing me with certain material used in the investigation. Likewise I should like to express my thanks to D. J. C. Walker of the Agricultural College of the University of Wisconsin, and to Dr. C. M. Haenseler of the New Jersey Experiment Station who were good enough to furnish me with clubbed cabbage roots from which I obtained the zoospores of Plasmodiophora brassicae. -
Morphology, Ultrastructure, and Molecular Phylogeny of Rozella Multimorpha, a New Species in Cryptomycota
DR. PETER LETCHER (Orcid ID : 0000-0003-4455-9992) Article type : Original Article Letcher et al.---A New Rozella From Pythium Morphology, Ultrastructure, and Molecular Phylogeny of Rozella multimorpha, a New Species in Cryptomycota Peter M. Letchera, Joyce E. Longcoreb, Timothy Y. Jamesc, Domingos S. Leited, D. Rabern Simmonsc, Martha J. Powella a Department of Biological Sciences, The University of Alabama, Tuscaloosa, 35487, Alabama, USA b School of Biology and Ecology, University of Maine, Orono, 04469, Maine, USA c Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, 48109, Michigan, USA d Departamento de Genética, Evolução e Bioagentes, Universidade Estadual de Campinas, Campinas, SP, 13082-862, Brazil Corresponding author: P. M. Letcher, Department of Biological Sciences, The University of Alabama, 1332 SEC, Box 870344, 300 Hackberry Lane, Tuscaloosa, Alabama 35487, USA, telephone number:Author Manuscript +1 205-348-8208; FAX number: +1 205-348-1786; e-mail: [email protected] This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/jeu.12452-4996 This article is protected by copyright. All rights reserved ABSTRACT Increasing numbers of sequences of basal fungi from environmental DNA studies are being deposited in public databases. Many of these sequences remain unclassified below the phylum level because sequence information from identified species is sparse. Lack of basic biological knowledge due to a dearth of identified species is extreme in Cryptomycota, a new phylum widespread in the environment and phylogenetically basal within the fungal lineage. -
Mitochondrial Glycolysis in a Major Lineage of Eukaryotes
GBE Mitochondrial Glycolysis in a Major Lineage of Eukaryotes Carolina Rıo Bartulos 1,2, Matthew B. Rogers3,9, Tom A. Williams4, Eleni Gentekaki5,10, Henner Brinkmann6,11, Ru¨digerCerff1, Marie-Franc¸oise Liaud1,AdrianB.Hehl7, Nigel R. Yarlett8, Ansgar Gruber2,5,12, Peter G. Kroth2,*, and Mark van der Giezen3,* 1Institut fu¨ r Genetik, Technische Universitat€ Braunschweig 2Fachbereich Biologie, Universitat€ Konstanz, Germany 3Biosciences, University of Exeter, United Kingdom 4School of Biological Sciences, University of Bristol, United Kingdom 5Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Canada 6Departement de Biochimie, Universite de Montreal C.P. 6128, Montreal, Quebec, Canada 7Institute of Parasitology, University of Zu¨ rich, Switzerland 8Department of Chemistry and Physical Sciences, Pace University 9Present address: Rangos Research Center, University of Pittsburgh, Children’s Hospital, Pittsburgh, PA 10Present address: School of Science and Human Gut Microbiome for Health Research Unit, Mae Fah Luang University, Chiang Rai, Thailand 11Present address: Leibniz-Institut DSMZ—Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany 12Present address: Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Cesk e Budejovice, Czech Republic *Corresponding authors: E-mails: [email protected]; [email protected]. Accepted: July 28, 2018 Abstract The establishment of the mitochondrion is seen as a transformational step in the origin of eukaryotes. With the mitochon- drion came bioenergetic freedom to explore novel evolutionary space leading to the eukaryotic radiation known today. The tight integration of the bacterial endosymbiont with its archaeal host was accompanied by a massive endosymbiotic gene transfer resulting in a small mitochondrial genome which is just a ghost of the original incoming bacterial genome. -
AACL BIOFLUX Aquaculture, Aquarium, Conservation & Legislation International Journal of the Bioflux Society
AACL BIOFLUX Aquaculture, Aquarium, Conservation & Legislation International Journal of the Bioflux Society Freshwater oomycete isolated from net cage cultures of Oreochromis niloticus with water mold infection in the Nam Phong River, Khon Kaen Province, Thailand 1Kwanprasert Panchai, 1Chutima Hanjavanit, 2Nilubon Rujinanont, 3Shinpei Wada, 3Osamu Kurata, 4Kishio Hatai 1 Applied Taxonomic Research Center, Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen, 40002, Thailand; 2 Department of Fisheries, Faculty of Agriculture, Khon Kaen University, Khon Kaen, 40002, Thailand; 3 Laboratory of Aquatic Medicine, School of Veterinary Medicine, Nippon Veterinary and Life Science University, Tokyo 180–8602, Japan; 4 Microbiology and Fish Disease Laboratory, Borneo Marine Research Institute, Universiti Malaysia Sabah, 88400, Kota Kinabalu, Malaysia. Corresponding author: C. Hanjavanit, [email protected] Abstract. Water mold-infected Nile tilapia (Oreochromis niloticus) from cultured net cages along the Nam Phong River, Khon Kaen Province, northeast Thailand, were collected from September 2010 to August 2011. The 34 obtained water mold isolates belonged to the genus Achlya and were identified as Achlya bisexualis, A. diffusa, A. klebsiana, A. prolifera and unidentified species of Achlya. Isolates of A. bisexualis and A. diffusa were the most abundant (35%), followed by the unidentified species of Achlya (18%) and then, A. klebsiana and A. prolifera (6% each). The ITS1-5.8S-ITS2 region of the unidentified isolates was sequenced for phylogenetic analysis. Three out of 6 isolates were indicated to be A. dubia (BKKU1005), A. bisexualis (BKKU1009 and BKKU1134), and other 3 out of 6 isolates (BKKU1117, BKKU 1118 and BKKU1127) will be an as-yet unidentified species of Achlya. -
Kingdom Chromista)
J Mol Evol (2006) 62:388–420 DOI: 10.1007/s00239-004-0353-8 Phylogeny and Megasystematics of Phagotrophic Heterokonts (Kingdom Chromista) Thomas Cavalier-Smith, Ema E-Y. Chao Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK Received: 11 December 2004 / Accepted: 21 September 2005 [Reviewing Editor: Patrick J. Keeling] Abstract. Heterokonts are evolutionarily important gyristea cl. nov. of Ochrophyta as once thought. The as the most nutritionally diverse eukaryote supergroup zooflagellate class Bicoecea (perhaps the ancestral and the most species-rich branch of the eukaryotic phenotype of Bigyra) is unexpectedly diverse and a kingdom Chromista. Ancestrally photosynthetic/ major focus of our study. We describe four new bicil- phagotrophic algae (mixotrophs), they include several iate bicoecean genera and five new species: Nerada ecologically important purely heterotrophic lineages, mexicana, Labromonas fenchelii (=Pseudobodo all grossly understudied phylogenetically and of tremulans sensu Fenchel), Boroka karpovii (=P. uncertain relationships. We sequenced 18S rRNA tremulans sensu Karpov), Anoeca atlantica and Cafe- genes from 14 phagotrophic non-photosynthetic het- teria mylnikovii; several cultures were previously mis- erokonts and a probable Ochromonas, performed ph- identified as Pseudobodo tremulans. Nerada and the ylogenetic analysis of 210–430 Heterokonta, and uniciliate Paramonas are related to Siluania and revised higher classification of Heterokonta and its Adriamonas; this clade (Pseudodendromonadales three phyla: the predominantly photosynthetic Och- emend.) is probably sister to Bicosoeca. Genetically rophyta; the non-photosynthetic Pseudofungi; and diverse Caecitellus is probably related to Anoeca, Bigyra (now comprising subphyla Opalozoa, Bicoecia, Symbiomonas and Cafeteria (collectively Anoecales Sagenista). The deepest heterokont divergence is emend.). Boroka is sister to Pseudodendromonadales/ apparently between Bigyra, as revised here, and Och- Bicoecales/Anoecales. -
Multimodal Sensorimotor System in Unicellular Zoospores of a Fungus Andrew J
© 2018. Published by The Company of Biologists Ltd | Journal of Experimental Biology (2018) 221, jeb163196. doi:10.1242/jeb.163196 RESEARCH ARTICLE Multimodal sensorimotor system in unicellular zoospores of a fungus Andrew J. M. Swafford and Todd H. Oakley* ABSTRACT found in freshwater ecosystems with a global distribution (James Complex sensory systems often underlie critical behaviors, including et al., 2014). Zoosporic fungi are typically characterized as saprobes, avoiding predators and locating prey, mates and shelter. Multisensory such as Allomyces, although parasitic life strategies on both plant and systems that control motor behavior even appear in unicellular animal hosts also do exist (Longcore et al., 1999). Similar to all fungi, eukaryotes, such as Chlamydomonas, which are important laboratory colonies of Allomyces use mycelia to absorb nutrients and ultimately models for sensory biology. However, we know of no unicellular grow reproductive structures. Unlike most fungi, Allomyces produce opisthokonts that control motor behavior using a multimodal sensory zoosporangia, terminations of mycelial branches that make, store and system. Therefore, existing single-celled models for multimodal ultimately release a multitude of single-celled, flagellated propagules, sensorimotor integration are very distantly related to animals. Here, termed zoospores (Olson, 1984). When the appropriate we describe a multisensory system that controls the motor function of environmental cues are present, zoospores are produced en masse, unicellular fungal zoospores. We found that zoospores of Allomyces eventually bursting from zoosporangia (James et al., 2014). Once in arbusculus exhibit both phototaxis and chemotaxis. Furthermore, the water column, the zoospores rely on a single, posterior flagellum we report that closely related Allomyces species respond to either to propel themselves away from the parent colony and towards the chemical or the light stimuli presented in this study, not both, and suitable substrates or hosts (Olson, 1984). -
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Ecology and Epidemiology Influence of the Matric and Osmotic Components of Water Potential on Zoospore Discharge in Phytophthora J. D. MacDonald and J. M. Duniway Assistant and Associate Professors, respectively, Department of Plant Pathology, University of California, Davis, CA 95616. Portion of a thesis submitted by the senior author in partial fulfillment of the requirements for the Ph.D. degree, University of California, Davis. Supported in part by National Science Foundation Grant BMS75-02607. Accepted for publication 24 October 1977. ABSTRACT MACDONALD, J. D., and J. M. DUNIWAY. 1978. Influence of the matric and osmotic components of water potential on zoospore discharge in Phytophthora. Phytopathology 68: 751-757. Mycelial disks from agar plate cultures of Phytophthora Shifts in temperature between 16 and 24 C failed to induce cryptogea and P. megasperma incubated in soil at -150 zoospore discharge at limiting I41m values. The influence of millibars (mb) matric potential (qim) on tension plates formed osmotica on zoospore discharge was evaluated by removing abundant sporangia within 3-4 days. The effect of itm on mycelial disks bearing sporangia from soil at 41m=-150 mb zoospore discharge was then determined by changing .m and placing them in solutions of known solute potential (I/s). from - 150 mb, where sporangia failed to release zoospores, Zoospores were discharged in solutions of KCI and MgSO4 at to 0, -1, -5, -10, or -25 mb Ir m. Sporangia typically q/,> -4.5 bars and in solutions of sucrose, NaCl, sea salts, discharged large numbers of zoospores within 60 to 90 min in and polyethylene glycol (PEG) 300 with 4/, values as low as-6 completely saturated soil (qim = 0) and at -1 mb qim. -
Zoosporic Marine Fungi from the Pacific Northwest (U.S.A.) 131
Arch. Mikrobiol. 66, 129--146 (1969) Zoosporic Marine Fungi from the Pacific Northwest (U. S.A.) F~ED~ICK K. SPA~nOW* Friday Harbor Laboratories, University of Washington and Department of Botany, University of Michigan, Ann Arbor, Michigan Received February 2, 1969 Summary. An investigation of the zoosporic fungi in the vicinity of the Friday Harbor Laboratory, San Juan Is., Washington, revealed the presence of great numbers of fungi. With one exception (Olpidium sp.) these were all biflagellate organisms. Predominating were species (11) of Thraustochytriaceae which abounded in water, in association with seaweeds, intertidal sands, and particularly on the surface of bottom samples down to depths of 298 m. A twelfth species of this group has several peculiarities and needs further investigation. Of the algal parasites, one on Polysiphonia and Pterosiphonia is considered new and termed Eurychasma ]oycei n. sp. Aside from the few fungi noted in JoH~so~ (1966), and FlYLLER, et al. (1964), little is known of the zoosporic marine Phyeomyeetes from the Pacific Northwest coast. The observations herein reported were made during a 10-week stay at the Friday Harbor Laboratory, Univer- sity of Washington, San Juan Island in the summer of 1968. It is of interest to note that only one of the zoosporic fungi found belonged to the Chytridiomyeetes, i.e., those with a single posterior flagellum on their zoospore, which are so abundant in fresh water. The others were all biflagellate forms belonging primarily to the Saproleg- niales. This peculiarity had previously been noted among marine Phy- comycetes from the Atlantic coast of the United States and in the Carribean area (SPaRrow, 1936, 1968).