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Receiver Operating Characteristic (ROC) Methods in Diagnostic Imaging
8/2/2017 Receiver Operating Characteristic (ROC) Methods in Diagnostic Imaging Elizabeth A. Krupinski, PhD Department Radiology & Imaging Sciences Emory University Bit of History • Developed early 1950s based on principles SDT for eval radar operators detecting enemy aircraft & missiles • Contributions from engineering, psychology & mathematics • Lee Lusted introduced medicine 1960s with significant effort on gaining better understanding decision-making • Result of radiology studies after WWII to determine which of 4 radiographic & fluoroscopic techniques better for TB screening • Goal = single imaging technique outperform others • Found intra & inter-observer variation so high impossible determine • Necessary to build systems generate better images so radiologists’ performance could improve (i.e., reduce observer variability) & develop methods evaluate these new systems & assess impact on observer performance Basics • ROC traditionally binary decision task – target/signal (e.g., lesion, disease, missile) present versus target/signal absent, or in case classification rather than detection target/signal belongs to class 1 (e.g., cancer, enemy) or class 2 (e.g., not cancer, friend) • ROC analysis these two conditions must be mutually exclusive 1 8/2/2017 2 x 2 Matrix Decision = Target Decision = Target Present Absent Truth = Target Present True Positive (TP) False Negative (FN) Truth = Target Absent False Positive (FP) True Negative (TN) Common Performance Metrics • Sensitivity = TP/(TP + FN) • Specificity = TN/(TN + FP) • Accuracy = (TP -
Eric Brenner, MD – Brief Biosketch: (Update of December 2018) *** Email Contact: [email protected]
Eric Brenner, MD – Brief Biosketch: (Update of December 2018) *** Email contact: [email protected] Eric Brenner is a medical epidemiologist and public health physician who currently resides in Columbia, South Carolina (USA). He attended the University of California at Berkeley where he majored in French Literature. After graduation he joined the Peace Corps and worked as a secondary school teacher in the Ivory Coast (West Africa) for two years. He then attended Dartmouth Medical School and completed subsequent clinical training both in San Francisco and in South Carolina (SC) which led to Board Certification in Internal Medicine and Infectious Disease. He has over 35 years experience with communicable disease control programs having worked at different times at the state level with the SC Department of Health and Environmental Control (SC-DHEC), at the national level with the US Centers for Disease Control (CDC), and internationally with the World Health Organization (WHO) where he worked for a year in Geneva with the Expanded Programme on Immunization (EPI) as well as on short- term assignments in a number of other countries. He has also worked as a consultant with other international agencies including UNICEF, PAHO and USAID. In 2015 he worked for six weeks with a CDC team in the Ivory Coast focusing on that W. African country’s preparedness for possible introduction of Ebola Virus Disease (EVD), and in 2018, again as a CDC consultant, worked for a month in Guinea on a project to help that country strengthen its Integrated Disease -
Kwame Nkrumah University of Science and Technology, Kumasi
KWAME NKRUMAH UNIVERSITY OF SCIENCE AND TECHNOLOGY, KUMASI, GHANA Assessing the Social Impacts of Illegal Gold Mining Activities at Dunkwa-On-Offin by Judith Selassie Garr (B.A, Social Science) A Thesis submitted to the Department of Building Technology, College of Art and Built Environment in partial fulfilment of the requirement for a degree of MASTER OF SCIENCE NOVEMBER, 2018 DECLARATION I hereby declare that this work is the result of my own original research and this thesis has neither in whole nor in part been prescribed by another degree elsewhere. References to other people’s work have been duly cited. STUDENT: JUDITH S. GARR (PG1150417) Signature: ........................................................... Date: .................................................................. Certified by SUPERVISOR: PROF. EDWARD BADU Signature: ........................................................... Date: ................................................................... Certified by THE HEAD OF DEPARTMENT: PROF. B. K. BAIDEN Signature: ........................................................... Date: ................................................................... i ABSTRACT Mining activities are undertaken in many parts of the world where mineral deposits are found. In developing nations such as Ghana, the activity is done both legally and illegally, often with very little or no supervision, hence much damage is done to the water bodies where the activities are carried out. This study sought to assess the social impacts of illegal gold mining activities at Dunkwa-On-Offin, the capital town of Upper Denkyira East Municipality in the Central Region of Ghana. The main objectives of the research are to identify factors that trigger illegal mining; to identify social effects of illegal gold mining activities on inhabitants of Dunkwa-on-Offin; and to suggest effective ways in curbing illegal mining activities. Based on the approach to data collection, this study adopts both the quantitative and qualitative approach. -
The Association Between Four Scoring Systems and 30-Day Mortality Among Intensive Care Patients with Sepsis
www.nature.com/scientificreports OPEN The association between four scoring systems and 30‑day mortality among intensive care patients with sepsis: a cohort study Tianyang Hu 1,4, Huajie Lv2,4 & Youfan Jiang3* Several commonly used scoring systems (SOFA, SAPS II, LODS, and SIRS) are currently lacking large sample data to confrm the predictive value of 30‑day mortality from sepsis, and their clinical net benefts of predicting mortality are still inconclusive. The baseline data, LODS score, SAPS II score, SIRS score, SOFA score, and 30‑day prognosis of patients who met the diagnostic criteria of sepsis were retrieved from the Medical Information Mart for Intensive Care III (MIMIC‑III) intensive care unit (ICU) database. Receiver operating characteristic (ROC) curves and comparisons between the areas under the ROC curves (AUC) were conducted. Decision curve analysis (DCA) was performed to determine the net benefts between the four scoring systems and 30‑day mortality of sepsis. For all cases in the cohort study, the AUC of LODS, SAPS II, SIRS, SOFA were 0.733, 0.787, 0.597, and 0.688, respectively. The diferences between the scoring systems were statistically signifcant (all P‑values < 0.0001), and stratifed analyses (the elderly and non‑elderly) also showed the superiority of SAPS II among the four systems. According to the DCA, the net beneft ranges in descending order were SAPS II, LODS, SOFA, and SIRS. For stratifed analyses of the elderly or non‑elderly groups, the results also showed that SAPS II had the most net beneft. Among the four commonly used scoring systems, the SAPS II score has the highest predictive value for 30‑day mortality from sepsis, which is better than LODS, SIRS, and SOFA. -
Investigating Data Management Practices in Australian Universities
Investigating Data Management Practices in Australian Universities Margaret Henty, The Australian National University Belinda Weaver, The University of Queensland Stephanie Bradbury, Queensland University of Technology Simon Porter, The University of Melbourne http://www.apsr.edu.au/investigating_data_management July, 2008 ii Table of Contents Introduction ...................................................................................... 1 About the survey ................................................................................ 1 About this report ................................................................................ 1 The respondents................................................................................. 2 The survey results............................................................................... 2 Tables and Comments .......................................................................... 3 Digital data .................................................................................... 3 Non-digital data forms....................................................................... 3 Types of digital data ......................................................................... 4 Size of data collection ....................................................................... 5 Software used for analysis or manipulation .............................................. 6 Software storage and retention ............................................................ 7 Research Data Management Plans......................................................... -
Quality Assurance
500A ANNUAL MEETING ABSTRACTS 2051 Synchronous Lung Adenocarcinoma and Primary Pulmonary MALT there are no established guidelines for storage methods of precut controls, patient tissue, Lymphoma: An Underdiagnosed Entity Associated with KRAS Mutations or microarrays (TMAs). We sought to determine loss of antigenicity and potential for J Yao, N Rehktman, K Nafa, A Dogan, M Ladanyi, ME Arcila. Memorial Sloan-Kettering preservation by refrigeration in a longitudinal prospective study. Cancer Center, New York, NY. Design: Selected diagnostic or prognostic antibodies included p53, IDH-1, Ki67, Background: Pulmonary extranodal marginal zone lymphoma (MZL / MALT) is a synaptophysin, and androgen receptor (AR). TMA with 22 cores from small cell rare entity accounting for less than 0.5% of primary pulmonary malignancies. The carcinomas, prostatic adenocarcinomas, and gliomas was constructed; 125 slides were occurrence of lung adenocarcinoma (AD) and primary pulmonary MALT lymphoma cut at 4 microns at time 0. Slides were stored exposed to air at room temperature (RT), as collision tumors have only been rarely reported. We investigated the concurrent 4C, or -20C; IHC was performed on the Leica Bond III at time 0, weeks 1, 2, 4, and 6. incidence of these two entities in a large cohort of lung AD cases submitted for routine Each tissue core was scored for overall intensity (0 to 3+) and % of cells staining (100 molecular diagnostic testing. cells within hotspot). Loss of antigenicity was defi ned as a decrease of staining intensity Design: Consecutive lung AD cases were reviewed and categorized based on the by one order and/or loss of≥10% of positive cells compared to time 0. -
Assessing the Environmental Adaptation of Wildlife And
Assessing the Environmental Adaptation of Wildlife and Production Animals Production and Wildlife of Adaptation Assessing Environmental the Assessing the Environmental Adaptation of Wildlife and • Edward Narayan Edward • Production Animals Applications of Physiological Indices and Welfare Assessment Tools Edited by Edward Narayan Printed Edition of the Special Issue Published in Animals www.mdpi.com/journal/animals Assessing the Environmental Adaptation of Wildlife and Production Animals: Applications of Physiological Indices and Welfare Assessment Tools Assessing the Environmental Adaptation of Wildlife and Production Animals: Applications of Physiological Indices and Welfare Assessment Tools Editor Edward Narayan MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Edward Narayan The University of Queensland Australia Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Animals (ISSN 2076-2615) (available at: https://www.mdpi.com/journal/animals/special issues/ environmental adaptation). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-0365-0142-0 (Hbk) ISBN 978-3-0365-0143-7 (PDF) © 2021 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher areproperly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
The One Health Approach in Public Health Surveillance and Disease Outbreak Response: Precepts & Collaborations from Sub Saharan Africa
The One Health Approach in Public Health Surveillance and Disease Outbreak Response: Precepts & Collaborations from Sub Saharan Africa Chima J. Ohuabunwo MD, MPH, FWACP Medical Epidemiologist/Assoc. Prof, MSM Department of Medicine & Adjunct Professor, Hubert’s Department of Global Health, Rollins School of Public Health, Emory University, Atlanta GA Learning Objectives: At end of the lecture, participants will be able to; •Define the One Health (OH) concept & approach • State the rationale and priorities of OH Approach • List key historical OH milestones & personalities •Mention core OH principles and stakeholders •Outline some OH precepts & collaborations • Illustrate OH application in public health surveillance and outbreak response 2 Presentation Outline • Definition of the One Health (OH) Concept & Approach • Rationale and Priorities of OH Approach •OH Historical Perspectives •OH approach in Public Health Surveillance & Outbreak Response •One Health Precepts & Collaborations in Africa –West Africa OH Technical Report Recommendations • Conclusion and Next Steps 3 One Health Concept: The What? •The collaborative efforts of multiple disciplines, working locally, nationally and globally, to attain optimal health for people, animals and the environment (AVMA, 2008) •A global strategy for expanding interdisciplinary collaborations and communications in all aspects of health care for humans, animals and the environment 4 One Health Approach: The How? • Innovative strategy to promote multi‐sectoral and interdisciplinary application of knowledge -
Geographic Tools for Global Public Health
GEOGRAPHIC TOOLS FOR GLOBAL PUBLIC HEALTH AN ASSESSMENT OF AVAILABLE SOFTWARE MEASURE Evaluation www.cpc.unc.edu/measure MEASURE Evaluation is funded by the U.S. Agency for International Development (USAID) through Cooperative Agreement GHA-A-00-08-00003-00 and is implemented by the Carolina Population Center at the University of North Carolina at Chapel Hill, in partnership with Futures Group, ICF International, John Snow, Inc., Management Sciences for Health, and Tulane University. The views expressed in this publication do not necessarily reflect the views of USAID or the United States government. November 2013 MS-13-80 Acknowledgements This guide was prepared as a collaborative effort by the MEASURE Evaluation Geospatial Team, following a suggestion from the MEASURE GIS Working Group. We are grateful for the helpful comments and reviews provided by Covington Brown, consultant; Clara Burgert of MEASURE DHS; and by Marc Cunningham, Jen Curran, Andrew Inglis, John Spencer, James Stewart, and Becky Wilkes of MEASURE Evaluation. Carrie Dolan of AidData at the College of William and Mary and Jim Wilson in the Department of Geography at Northern Illinois University also reviewed the paper and provided insightful comments. We are grateful for general support from the Population Research Infrastructure Program awarded to the University of North Carolina at Chapel Hill’s Carolina Population Center (R24 HD050924) by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD). The inclusion of a software program in this document does not imply endorsement by the MEASURE GIS Working Group or its members; or by MEASURE Evaluation, the U.S. -
Dose, Image Quality and Spine Modeling Assessment of Biplanar EOS Micro-Dose Radiographs for the Follow-Up of In-Brace Adolescent Idiopathic Scoliosis Patients
Dose, image quality and spine modeling assessment of biplanar EOS micro-dose radiographs for the follow-up of in-brace adolescent idiopathic scoliosis patients. Baptiste Morel, Sonia Moueddeb, Eleonore Blondiaux, Stephen Richard, Manon Bachy, Raphael Vialle, Hubert Ducou Le Pointe To cite this version: Baptiste Morel, Sonia Moueddeb, Eleonore Blondiaux, Stephen Richard, Manon Bachy, et al.. Dose, image quality and spine modeling assessment of biplanar EOS micro-dose radiographs for the follow-up of in-brace adolescent idiopathic scoliosis patients.. European Spine Journal, Springer Verlag, 2018, 27 (5), pp.1082-1088. 10.1007/s00586-018-5464-9.. hal-02479044 HAL Id: hal-02479044 https://hal.archives-ouvertes.fr/hal-02479044 Submitted on 14 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Dose, image quality and spine modeling assessment of biplanar EOS micro‑dose radiographs for the follow‑up of in‑brace adolescent idiopathic scoliosis patients Baptiste Morel1,6 · Sonia Moueddeb2 · Eleonore Blondiaux2,3 · Stephen Richard2 · Manon Bachy4,5 · Raphael Vialle4,5 · Hubert Ducou Le Pointe2,3 Abstract Purpose The aim of this study was to compare the radiation dose, image quality and 3D spine parameter measurements of EOS low-dose and micro-dose protocols for in-brace adolescent idiopathic scoliosis (AIS) patients. -
The Principles of Outbreak Epidemiology
Field Epidemiology- Principles, Practice & Application Part I Concept of Epidemiology EPI - Upon DEMOS - Population LOGOS – Study of “Epidemiology is the study of the distribution and determinants of health-related states or events in specified populations, and the application of this study to the control of health problems.” (Last, 2008). Concept of Epidemiology (Contd) • Distribution- within the population – by (type of) person, place and time. Epidemiological Triad of Distribution-Time, Place, Person • Determinants- causes (―risk factors‖) and mechanisms underlying disease. Epidemiological Triad of Causation-Agent, Host, Environment Concept of Epidemiology (Contd) • Control- what to do about the problem? planning strategies, setting priorities, evaluating risks and benefits of interventions. • Diseases- what is it (case definition)? What is its natural history? The Epidemiological approach 1.Asking questions: What, Why, When, How, Where & Who 2. Making comparison The Epidemiological approach 1. Asking questions: What, Why, When, How, Where & Who Related to health events a. What is the event? b. What is the magnitude? c. Where, When & Why did it happen? d. Who are affected? Related to health actions a. What can be done to reduce the problem ? b. How can it be prevented in the future? The Epidemiological approach 2.Making comparison Comparison of two( or more groups) One group have the disease (or exposed the risk factor) One group do not have the disease (or not exposed the risk factor) The epidemiologic approach: Steps to public -
WHO Recommended Surveillance Standards. Second Edition
WHO/CDS/CSR/ISR/99.2 WHO Recommended Surveillance Standards. Second edition This document has been produced jointly by technical programmes in WHO and by UNAIDS World Health Organization Department of Communicable Disease Surveillance and Response This document has been downloaded from the WHO/CSR Web site. The original cover pages and lists of participants are not included. See http://www.who.int/emc for more information. © World Health Organization This document is not a formal publication of the World Health Organization (WHO), and all rights are reserved by the Organization. The document may, however, be freely reviewed, abstracted, reproduced and translated, in part or in whole, but not for sale nor for use in conjunction with commercial purposes. The views expressed in documents by named authors are solely the responsibility of those authors. The mention of specific companies or specific manufacturers' products does no imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. WHO Recommended Surveillance Standards WHO/CDS/CSR/ISR/99.2 Contents Acknowledgements ..................................................................................3 Acronyms .................................................................................................. 5 Introduction...............................................................................................7 National coordination of communicable disease surveillance.............. 8 Explanatory