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Whole Genome Analysis of Leptospira Licerasiae Provides Insight Into Leptospiral Evolution and Pathogenicity
Whole Genome Analysis of Leptospira licerasiae Provides Insight into Leptospiral Evolution and Pathogenicity Jessica N. Ricaldi1,2., Derrick E. Fouts3., Jeremy D. Selengut3, Derek M. Harkins3, Kailash P. Patra2, Angelo Moreno2, Jason S. Lehmann2, Janaki Purushe3, Ravi Sanka3, Michael Torres4, Nicholas J. Webster5, Joseph M. Vinetz1,2,4*, Michael A. Matthias2* 1 Instituto de Medicina Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Peru, 2 Division of Infectious Diseases, Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, United States of America, 3 J. Craig Venter Institute, Rockville, Maryland, United States of America, 4 Departamento de Ciencias Celulares y Moleculares, Laboratorio de Investigacio´n y Desarrollo, Facultad de Ciencias, Universidad Peruana Cayetano Heredia, Lima, Peru, 5 Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, United States of America Abstract The whole genome analysis of two strains of the first intermediately pathogenic leptospiral species to be sequenced (Leptospira licerasiae strains VAR010 and MMD0835) provides insight into their pathogenic potential and deepens our understanding of leptospiral evolution. Comparative analysis of eight leptospiral genomes shows the existence of a core leptospiral genome comprising 1547 genes and 452 conserved genes restricted to infectious species (including L. licerasiae) that are likely to be pathogenicity-related. Comparisons of the functional content of the genomes suggests that L. licerasiae retains several proteins related to nitrogen, amino acid and carbohydrate metabolism which might help to explain why these Leptospira grow well in artificial media compared with pathogenic species. L. licerasiae strains VAR010T and MMD0835 possess two prophage elements. -
Comparative Genomic Analysis of the Genus Leptospira
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. Derrick E Fouts, Michael A Matthias, Haritha Adhikarla, Ben Adler, Luciane Amorim-Santos, Douglas E Berg, Dieter Bulach, Alejandro Buschiazzo, Yung-Fu Chang, Renee L Galloway, et al. To cite this version: Derrick E Fouts, Michael A Matthias, Haritha Adhikarla, Ben Adler, Luciane Amorim-Santos, et al.. What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Lep- tospira.. PLoS Neglected Tropical Diseases, Public Library of Science, 2016, 10 (2), pp.e0004403. 10.1371/journal.pntd.0004403. pasteur-01436457 HAL Id: pasteur-01436457 https://hal-pasteur.archives-ouvertes.fr/pasteur-01436457 Submitted on 16 Apr 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons CC0 - Public Domain Dedication| 4.0 International License RESEARCH ARTICLE What Makes a Bacterial Species Pathogenic?: Comparative Genomic Analysis of the Genus Leptospira Derrick E. Fouts1*, Michael A. Matthias2, Haritha Adhikarla3, Ben Adler4, Luciane Amorim- Santos3,5, Douglas E. Berg2, Dieter Bulach6, Alejandro Buschiazzo7,8, Yung-Fu Chang9, Renee L. Galloway10, David A. Haake11,12, Daniel H. Haft1¤, Rudy Hartskeerl13, Albert I. -
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira
UC San Diego UC San Diego Previously Published Works Title What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. Permalink https://escholarship.org/uc/item/0g08233z Journal PLoS neglected tropical diseases, 10(2) ISSN 1935-2727 Authors Fouts, Derrick E Matthias, Michael A Adhikarla, Haritha et al. Publication Date 2016-02-18 DOI 10.1371/journal.pntd.0004403 Peer reviewed eScholarship.org Powered by the California Digital Library University of California RESEARCH ARTICLE What Makes a Bacterial Species Pathogenic?: Comparative Genomic Analysis of the Genus Leptospira Derrick E. Fouts1*, Michael A. Matthias2, Haritha Adhikarla3, Ben Adler4, Luciane Amorim- Santos3,5, Douglas E. Berg2, Dieter Bulach6, Alejandro Buschiazzo7,8, Yung-Fu Chang9, Renee L. Galloway10, David A. Haake11,12, Daniel H. Haft1¤, Rudy Hartskeerl13, Albert I. Ko3,5, Paul N. Levett14, James Matsunaga11,12, Ariel E. Mechaly7, Jonathan M. Monk15, Ana L. T. Nascimento16,17, Karen E. Nelson1, Bernhard Palsson15, Sharon J. Peacock18, Mathieu Picardeau19, Jessica N. Ricaldi20, Janjira Thaipandungpanit21, Elsio A. Wunder, Jr.3,5, X. Frank Yang22, Jun-Jie Zhang22, Joseph M. Vinetz2,20,23* 1 J. Craig Venter Institute, Rockville, Maryland, United States of America, 2 Division of Infectious Diseases, Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, United States of America, 3 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States -
EID Vol15no4 Cover Copy
Peer-Reviewed Journal Tracking and Analyzing Disease Trends pages 519–688 EDITOR-IN-CHIEF D. Peter Drotman Managing Senior Editor EDITORIAL BOARD Polyxeni Potter, Atlanta, Georgia, USA Dennis Alexander, Addlestone Surrey, United Kingdom Senior Associate Editor Barry J. Beaty, Ft. Collins, Colorado, USA Brian W.J. Mahy, Atlanta, Georgia, USA Martin J. Blaser, New York, New York, USA Christopher Braden, Atlanta, GA, USA Associate Editors Carolyn Bridges, Atlanta, GA, USA Paul Arguin, Atlanta, Georgia, USA Arturo Casadevall, New York, New York, USA Charles Ben Beard, Ft. Collins, Colorado, USA Kenneth C. Castro, Atlanta, Georgia, USA David Bell, Atlanta, Georgia, USA Thomas Cleary, Houston, Texas, USA Charles H. Calisher, Ft. Collins, Colorado, USA Anne DeGroot, Providence, Rhode Island, USA Michel Drancourt, Marseille, France Vincent Deubel, Shanghai, China Paul V. Effl er, Perth, Australia Ed Eitzen, Washington, DC, USA K. Mills McNeill, Kampala, Uganda David Freedman, Birmingham, AL, USA Nina Marano, Atlanta, Georgia, USA Kathleen Gensheimer, Augusta, ME, USA Martin I. Meltzer, Atlanta, Georgia, USA Peter Gerner-Smidt, Atlanta, GA, USA David Morens, Bethesda, Maryland, USA Duane J. Gubler, Singapore J. Glenn Morris, Gainesville, Florida, USA Richard L. Guerrant, Charlottesville, Virginia, USA Patrice Nordmann, Paris, France Scott Halstead, Arlington, Virginia, USA Tanja Popovic, Atlanta, Georgia, USA David L. Heymann, Geneva, Switzerland Jocelyn A. Rankin, Atlanta, Georgia, USA Daniel B. Jernigan, Atlanta, Georgia, USA Didier Raoult, Marseille, France Charles King, Cleveland, Ohio, USA Pierre Rollin, Atlanta, Georgia, USA Keith Klugman, Atlanta, Georgia, USA Dixie E. Snider, Atlanta, Georgia, USA Takeshi Kurata, Tokyo, Japan Frank Sorvillo, Los Angeles, California, USA S.K. Lam, Kuala Lumpur, Malaysia David Walker, Galveston, Texas, USA Bruce R. -
Analysis of Genes Encoding Outer Membrane Protein Of
Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk A thesis Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY by KARUKRITI KAUSHIK GHOSH Under the supervision of Dr. Manish Kumar Department of Biosciences and Bioengineering Indian Institute of Technology Guwahati Guwahati-781039, Assam, India. February, 2019 TH-2331_136106014 TH-2331_136106014 Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk by Karukriti Kaushik Ghosh IIT Guwahati, 2019 Doctoral Committee Dr. Manish Kumar (Department of Biosciences and Bioengineering) Supervisor Dr. Anil Mukund Limaye (Department of Biosciences and Bioengineering) Chairperson Dr. Sachin Kumar (Department of Biosciences and Bioengineering) Member Dr. Debasis Manna (Department of Chemistry) Member TH-2331_136106014 TH-2331_136106014 DEDICATION I dedicate this work to my grandparents and parents for their selfless sacrifices and belief in my abilities. They are my inspiration and pillars of strength. TH-2331_136106014 TH-2331_136106014 DECLARATION I hereby declare that the matter embodied in this thesis entitled “Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk” is the result of investigations carried out by me in the Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Assam, India under the supervision of Dr. Manish Kumar. In keeping with the general practice of reporting scientific observations, due acknowledgments have been made wherever the work of other investigators are referred. -
Technological Advances in the Molecular Biology of Leptospira
J. Mol. Microbiol. Biotechnol. (2000) 2(4): 455-462. JMMBLeptospira Symposium Molecular Biology on455 Spirochete Molecular Biology Technological Advances in the Molecular Biology of Leptospira Richard Zuerner1*, David Haake2, Ben Adler3, unnamed genomospecies (Brenner et al., 1999). These and Ruud Segers4 bacteria are antigenically diverse. Changes in the antigenic composition of lipopolysaccharide (LPS) are thought to 1Bacterial Diseases of Livestock, National Animal Disease account for this antigenic diversity. The presence of more Center, Agricultural Research Service, U.S. Department than 200 recognized antigenic types (termed serovars) of of Agriculture, P.O. Box 70, Ames, Iowa 50010, USA pathogenic leptospires have complicated our 2UCLA School of Medicine, Division of Infectious Diseases, understanding of this genus. In several cases, members 111F VA Greater Los Angeles Healthcare System, 11301 of different species are serologically indistinguishable and Wilshire Blvd. Los Angeles, CA 90073, USA belong to the same serovar. For example, strains of serovar 3Bacterial Pathogenesis Research Group, Department of hardjo have been isolated which belong to the species L. Microbiology, Monash University, Clayton VIC 3168, interrogans, L. borgpetersenii, and L. meyeri (Brenner et Australia al., 1999). 4Intervet International B.V., Department of Bacteriological Leptospirosis, caused by the pathogenic leptospires, Research, P.O. Box 31, 5830 AA Boxmeer, The is one of the most widespread zoonotic diseases known. Netherlands In spite of significant genetic diversity between species (Brenner et al., 1999) these bacteria cause clinically similar diseases. Two forms of leptospirosis are recognized: an Abstract acute, life-threatening infection; also a chronic disease, with little outward signs of infection. Both forms of the disease Pathogenic members of the genus Leptospira have involve a systemic infection, resulting from contact with been refractory to genetic study due to lack of known contaminated body fluids. -
Guidelines for Safe Recreational Water Environments
GUIDELINES FOR SAFE RECREA TIONAL WATER ENVIRONMENTS TIONAL WATER Guidelines for Safe Recreational Water Environments Volume 2: Swimming Pools and Similar Environments provides an authoritative referenced review and Guidelines for assessment of the health hazards associated with recreational waters of this type; their monitoring and assessment; and activities available for their control through safe recreational water education of users, good design and construction, and good operation and management. The Guidelines include both specific guideline values and good practices. They address a wide range of types of hazard, including hazards leading environments to drowning and injury, water quality, contamination of associated facilities and VOLUME 2 air quality. VOLUME 2. SWIMMING POOLS2. AND SIMILAR ENVIRONMENTS VOLUME SWIMMING POOLS AND The preparation of this volume has covered a period of over a decade and has involved the participation of numerous institutions and more than 60 experts from SIMILAR ENVIRONMENTS 20 countries worldwide. This is the first international point of reference to provide comprehensive guidance for managing swimming pools and similar facilities so that health benefits are maximized while negative public health impacts are minimized. This volume will be useful to a variety of different stakeholders with interests in ensuring the safety of pools and similar environments, including national and local authorities; facility owners, operators and designers (public, semi-public and domestic facilities); special interest groups; public health professionals; scientists and researchers; and facility users. ISBN 92 4 154680 8 WHO GGuidelinesuidelines fforor ssafeafe reecreationalcreational wwaterater eenvironmentsnvironments VVOLUMEOLUME 22:: SSWIMMINGWIMMING PPOOLSOOLS AANDND SSIMILARIMILAR EENVIRONMENTSNVIRONMENTS WORLD HEALTH ORGANIZATION 2006 llayoutayout SSafeafe WWater.inddater.indd 1 224.2.20064.2.2006 99:56:44:56:44 WHO Library Cataloguing-in-Publication Data World Health Organization.