Oxygen Acquisition of the Reedfish, Erpetoichthys Calabaricus
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2 Breeding of wild and some domestic animals at regional zoological institutions in 2013 3 РЫБЫ P I S C E S ВОББЕЛОНГООБРАЗНЫЕ ORECTOLOBIFORMES Сем. Азиатские кошачьи акулы (Бамбуковые акулы) – Hemiscyllidae Коричневополосая бамбуковая акула – Chiloscyllium punctatum Brownbanded bambooshark IUCN (NT) Sevastopol 20 ХВОСТОКОЛООБРАЗНЫЕ DASYATIFORMES Сем. Речные хвостоколы – Potamotrygonidae Глазчатый хвостокол (Моторо) – Potamotrygon motoro IUCN (DD) Ocellate river stingray Sevastopol - ? КАРПООБРАЗНЫЕ CYPRINIFORMES Сем. Цитариновые – Citharinidae Серебристый дистиход – Distichodusaffinis (noboli) Silver distichodus Novosibirsk 40 Сем. Пираньевые – Serrasalmidae Серебристый метиннис – Metynnis argenteus Silver dollar Yaroslavl 10 Обыкновенный метиннис – Metynnis schreitmuelleri (hypsauchen) Plainsilver dollar Nikolaev 4; Novosibirsk 100; Kharkov 20 Пятнистый метиннис – Metynnis maculatus Spotted metynnis Novosibirsk 50 Пиранья Наттерера – Serrasalmus nattereri Red piranha Novosibirsk 80; Kharkov 30 4 Сем. Харацидовые – Characidae Красноплавничный афиохаракс – Aphyocharax anisitsi (rubripinnis) Bloodfin tetra Киев 5; Perm 10 Парагвайский афиохаракс – Aphyocharax paraquayensis Whitespot tetra Perm 11 Рубиновый афиохаракс Рэтбина – Aphyocharax rathbuni Redflank bloodfin Perm 10 Эквадорская тетра – Astyanax sp. Tetra Perm 17 Слепая рыбка – Astyanax fasciatus mexicanus (Anoptichthys jordani) Mexican tetra Kharkov 10 Рублик-монетка – Ctenobrycon spilurus (+ С. spilurusvar. albino) Silver tetra Kharkov 20 Тернеция (Траурная тетра) – Gymnocorymbus -
RELATIONSHIP BETWEEN RESPIRATION RATE and BODY SIZE in MARINE PLANKTON ANIMALS AS a Title FUNCTION of the TEMPERATURE of HABITAT
RELATIONSHIP BETWEEN RESPIRATION RATE AND BODY SIZE IN MARINE PLANKTON ANIMALS AS A Title FUNCTION OF THE TEMPERATURE OF HABITAT Author(s) IKEDA, Tsutomu Citation 北海道大學水産學部研究彙報, 21(2), 91-112 Issue Date 1970-08 Doc URL http://hdl.handle.net/2115/23417 Type bulletin (article) File Information 21(2)_P91-112.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP RELATIONSIDP BETWEEN RESPIRATION RATE AND BODY SIZE IN MARINE PLANKTON ANIMALS AS A FUNCTION OF THE TEMPERATURE OF HABITAT Tsutomu IKEDA * It is generally known that the rate of oxygen consumption (metabolic rate) per unit body weight of animals increases with the decrease in body size of the animals. This concept was initiated from the finding of the "surface law" by Sarrus & Rameaux (1839), and many studies on this problem have been done on mammals and birds ever since (refer to the reviews of Krogh, 1916; Benedict, 1938; Kleiber, 1947; Prosser, 1961a). A detailed study on this subject (Kleiber, 1947) has shown that the metabolic rate is proportional to a given power function of body weight rather than to body surface. Weymouth et al. (1944) showed that this relation-, ship is also applicable to poikilothermal animals according to experiments on a kelp crab, Pugettia producta. Zeuthen (1947), working on the marine micro-fauna, found a similar relationship. The review of Zeuthen (1953) extended this concept to organisms from bacteria to large mammals. In regard to plankton animals, Raymont & Gauld (1951) first suggested that the rate of oxygen consumption in copepods is proportional to their body surface. -
A Review of Hearing by Sturgeon and Lamprey
A Review of Hearing by Sturgeon and Lamprey Arthur N. Popper Environmental BioAcoustics, LLC Rockville, MD 20853 Submitted to the U.S. Army Corps of Engineers, Portland District August 12, 2005 ms-coe Sturgeon & Lamprey Page 1 of 23 Contents 1. Introduction............................................................................................................................... 3 2. Hearing Capabilities, Detection, and Sound Production ...................................................... 3 a. Sensory cells of the ear ....................................................................................................... 4 b. The Lateral Line.................................................................................................................. 4 c. The Inner Ear ........................................................................................................................ 6 d. Hearing ................................................................................................................................. 7 e. Why Do Fish Hear ................................................................................................................ 9 f. Sound Production .................................................................................................................... 9 3. Underwater Acoustics – A brief overview ............................................................................ 10 4. Bioacoustics of sturgeon and lamprey.................................................................................. -
Aquatic Primary Productivity Field Protocols for Satellite Validation and Model Synthesis (DRAFT)
Ocean Optics & Biogeochemistry Protocols for Satellite Ocean Colour Sensor Validation IOCCG Protocol Series Volume 7.0, 2021 Aquatic Primary Productivity Field Protocols for Satellite Validation and Model Synthesis (DRAFT) Report of a NASA-sponsored workshop with contributions (alphabetical) from: William M. Balch Bigelow Laboratory for Ocean Sciences, Maine, USA Magdalena M. Carranza Monterey Bay Aquarium Research Institute, California, USA Ivona Cetinic University Space Research Association, NASA Goddard Space Flight Center, Maryland, USA Joaquín E. Chaves Science Systems and Applications, Inc., NASA Goddard Space Flight Center, Maryland, USA Solange Duhamel University of Arizona, Arizona, USA Zachary K. Erickson University Space Research Association, NASA Goddard Space Flight Center, Maryland, USA Andrea J. Fassbender NOAA Pacific Marine Environmental Laboratory, Washington, USA Ana Fernández-Carrera Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany Sara Ferrón University of Hawaii at Manoa, Hawaii, USA E. Elena García-Martín National Oceanography Centre, Southampton, UK Joaquim Goes Lamont Doherty Earth Observatory at Columbia University, New York, USA Helga do Rosario Gomes Lamont Doherty Earth Observatory at Columbia University, New York, USA Maxim Y. Gorbunov Department of Marine and Coastal Sciences, Rutgers University, New Jersey, USA Kjell Gundersen Plankton Research Group, Institute of Marine Research, Bergen, Norway Kimberly Halsey Department of Microbiology, Oregon State University, Oregon, USA Toru Hirawake -
A Guide to the Parasites of African Freshwater Fishes
A Guide to the Parasites of African Freshwater Fishes Edited by T. Scholz, M.P.M. Vanhove, N. Smit, Z. Jayasundera & M. Gelnar Volume 18 (2018) Chapter 2.1. FISH DIVERSITY AND ECOLOGY Martin REICHARD Diversity of fshes in Africa Fishes are the most taxonomically diverse group of vertebrates and Africa shares a large portion of this diversity. This is due to its rich geological history – being a part of Gondwana, it shares taxa with the Neotropical region, whereas recent close geographical affnity to Eurasia permitted faunal exchange with European and Asian taxa. At the same time, relative isolation and the complex climatic and geological history of Africa enabled major diversifcation within the continent. The taxonomic diversity of African freshwater fshes is associated with functional and ecological diversity. While freshwater habitats form a tiny fraction of the total surface of aquatic habitats compared with the marine environment, most teleost fsh diversity occurs in fresh waters. There are over 3,200 freshwater fsh species in Africa and it is likely several hundreds of species remain undescribed (Snoeks et al. 2011). This high diversity and endemism is likely mirrored in diversity and endemism of their parasites. African fsh diversity includes an ancient group of air-breathing lungfshes (Protopterus spp.). Other taxa are capable of breathing air and tolerate poor water quality, including several clariid catfshes (e.g., Clarias spp.; Fig. 2.1.1D) and anabantids (Ctenopoma spp.). Africa is also home to several bichir species (Polypterus spp.; Fig. 2.1.1A), an ancient fsh group endemic to Africa, and bonytongue Heterotis niloticus (Cuvier, 1829) (Osteoglossidae), a basal actinopterygian fsh. -
Macrogyrodactylus Polypteri Malberg on Polypterus Senegalus in the Sudan
Macrogyrodactylus polypteri Malberg on Polypterus senegalus in the Sudan Item Type article Authors Amirthalingam, C. Download date 26/09/2021 20:17:20 Link to Item http://hdl.handle.net/1834/32496 NOTES AND COMMENTS Macrogyrodactylus polypter£ Malberg on Polypterus senega/us in the Sudan POLYPTERUS is a genua of fishes which is best considered as descendent ()f the Palaeoniscid stock coming from Devonian times (400 million years ago). This genus, one of the' indigenous fishes of Africa, is of economic importance in some parts of the Sudan. In August 1962, small specimens of Polypterus senegalus Cuvier, ranging from 20 to 25 ems., collected from Jebel el Aulia on the While Nile, were introduced into a well aerated aquarium and fed on earthworms. During the first week the water was clear in the tank; nevertheless, because of the debris from the earthworms, the water was changed once or twice. The fishes appeared to be quite active and healthy and were swimming in mid-water or resting on the fl.oor of the aquarium. Occasionally they came up to the surface to take a gulp of air. In the course of the following week, the water-although changed as frequently as before-appeared to become turbid and viscous. At the end of that week, a few of the fishes were found to be lethargic, drifting with the dorsal finlets and a row or two of the dorsolateral scales exposed above the water level. On the 15th day some died. Post-mortem examination revealed that the dead fishes were heavily infected with a monogenetic trematode of the Gyrodactylid type which was later identified (by my colleague L. -
Conserved Keratin Gene Clusters in Ancient Fish: an Evolutionary Seed for Terrestrial Adaptation
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.06.063123; this version posted October 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Conserved Keratin Gene Clusters in Ancient Fish: an Evolutionary Seed for Terrestrial Adaptation Yuki Kimura1 and Masato Nikaido*,1 1 School of Life Science and Technology, Tokyo Institute of Technology * Corresponding author: E-mail: [email protected] Keywords: Gene cluster; Keratin; Vertebrate evolution; Comparative genomics; Phylogenetics; Selection analysis; Synteny analysis Highlights Two major keratin clusters are conserved from sharks to terrestrial vertebrates. Adult epidermis-specific keratins in amphibians stem from the two major clusters. A novel keratin gene subcluster was found in reedfish. Ancestral krt18/krt8 gene sets were found in all vertebrates. Functional diversification signatures were found in reedfish and amphibian keratins. 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.06.063123; this version posted October 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Type I and type II keratins are subgroups of intermediate filament proteins that provide toughness to the epidermis and protect it from water loss. In terrestrial vertebrates, the keratin genes form two major clusters, clusters 1 and 2, each of which is dominated by type I and II keratin genes. -
An Alignment-Free Computational Tool for Analyzing and Visualizing DNA Sequences' Interrelationships Rallis Karamichalis the University of Western Ontario
Western University Scholarship@Western Electronic Thesis and Dissertation Repository September 2016 Molecular Distance Maps: An alignment-free computational tool for analyzing and visualizing DNA sequences' interrelationships Rallis Karamichalis The University of Western Ontario Supervisor Prof. Lila Kari The University of Western Ontario Graduate Program in Computer Science A thesis submitted in partial fulfillment of the requirements for the degree in Doctor of Philosophy © Rallis Karamichalis 2016 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Other Computer Sciences Commons Recommended Citation Karamichalis, Rallis, "Molecular Distance Maps: An alignment-free computational tool for analyzing and visualizing DNA sequences' interrelationships" (2016). Electronic Thesis and Dissertation Repository. 4071. https://ir.lib.uwo.ca/etd/4071 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract In an attempt to identify and classify species based on genetic evidence, we propose a novel combination of methods to quantify and visualize the interrelationships between thousand of species. This is possible by using Chaos Game Representation (CGR) of DNA sequences to compute genomic signatures which we then compare by computing pairwise distances. In the last step, the original DNA sequences are embedded in a high dimensional space using Multi- Dimensional Scaling (MDS) before everything is projected on a Euclidean 3D space. To start with, we apply this method to a mitochondrial DNA dataset from NCBI containing over 3,000 species. -
The Sterlet Sturgeon Genome Sequence and the Mechanisms Of
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization Kang Du, Matthias Stöck, Susanne Kneitz, Christophe Klopp, Joost Woltering, Mateus Contar Adolfi, Romain Feron, Dmitry Prokopov, Alexey Makunin, Ilya Kichigin, et al. To cite this version: Kang Du, Matthias Stöck, Susanne Kneitz, Christophe Klopp, Joost Woltering, et al.. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nature Ecology & Evolution, Nature, 2020, 4 (6), pp.841-852. 10.1038/s41559-020-1166-x. hal-02640938 HAL Id: hal-02640938 https://hal.inrae.fr/hal-02640938 Submitted on 6 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ARTICLES https://doi.org/10.1038/s41559-020-1166-x The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization Kang Du1,2, Matthias Stöck 3 ✉ , Susanne Kneitz1, Christophe Klopp 4,5, Joost M. Woltering6, Mateus Contar Adolfi1, Romain Feron 7, Dmitry Prokopov 8, Alexey Makunin 8, Ilya Kichigin8, Cornelia Schmidt1, Petra Fischer1, Heiner Kuhl3, Sven Wuertz3, Jörn Gessner3, Werner Kloas3, Cédric Cabau4,5, Carole Iampietro9, Hugues Parrinello10, Chad Tomlinson11, Laurent Journot10, John H. Postlethwait12, Ingo Braasch13, Vladimir Trifonov8, Wesley C. Warren14, Axel Meyer 6, Yann Guiguen 15 and Manfred Schartl 2,16,17 ✉ Sturgeons seem to be frozen in time. -
Respiration in Aquatic Ecosystems This Page Intentionally Left Blank Respiration in Aquatic Ecosystems
Respiration in Aquatic Ecosystems This page intentionally left blank Respiration in Aquatic Ecosystems EDITED BY Paul A. del Giorgio Université du Québec à Montréal, Canada Peter J. le B. Williams University of Wales, Bangor, UK 1 3 Great Clarendon Street, Oxford OX2 6DP Oxford University Press is a department of the University of Oxford. It furthers the University’s objective of excellence in research, scholarship, and education by publishing worldwide in Oxford New York Auckland Bangkok BuenosAires Cape Town Chennai Dar es Salaam Delhi Hong Kong Istanbul Karachi Kolkata Kuala Lumpur Madrid Melbourne Mexico City Mumbai Nairobi São Paulo Shanghai Taipei Tokyo Toronto Oxford is a registered trade mark of Oxford University Press in the UK and in certain other countries Published in the United States by Oxford University Press Inc., New York © Oxford University Press 2005 The moral rights of the author have been asserted Database right Oxford University Press (maker) First published 2005 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, without the prior permission in writing of Oxford University Press, or as expressly permitted by law, or under terms agreed with the appropriate reprographics rights organization. Enquiries concerning reproduction outside the scope of the above should be sent to the Rights Department, Oxford University Press, at the address above You must not circulate this book in any other binding or cover and you must impose this -
The Divergent Genomes of Teleosts
Postprint copy Annu. Rev. Anim. Biosci. 2018. 6:X--X https://doi.org/10.1146/annurev-animal-030117-014821 Copyright © 2018 by Annual Reviews. All rights reserved RAVI ■ VENKATESH DIVERGENT GENOMES OF TELEOSTS THE DIVERGENT GENOMES OF TELEOSTS Vydianathan Ravi and Byrappa Venkatesh Institute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research), Biopolis, Singapore 138673, Singapore; email: [email protected], [email protected] ■ Abstract Boasting nearly 30,000 species, teleosts account for half of all living vertebrates and approximately 98% of all ray-finned fish species (Actinopterygii). Teleosts are also the largest and most diverse group of vertebrates, exhibiting an astonishing level of morphological, physiological, and behavioral diversity. Previous studies had indicated that the teleost lineage has experienced an additional whole-genome duplication event. Recent comparative genomic analyses of teleosts and other bony vertebrates using spotted gar (a nonteleost ray-finned fish) and elephant shark (a cartilaginous fish) as outgroups have revealed several divergent features of teleost genomes. These include an accelerated evolutionary rate of protein-coding and nucleotide sequences, a higher rate of intron turnover, and loss of many potential cis-regulatory elements and shorter conserved syntenic blocks. A combination of these divergent genomic features might have contributed to the evolution of the amazing phenotypic diversity and morphological innovations of teleosts. Keywords whole-genome duplication, evolutionary rate, intron turnover, conserved noncoding elements, conserved syntenic blocks, phenotypic diversity INTRODUCTION With over 68,000 known species (IUCN 2017; http://www.iucnredlist.org), vertebrates are the most dominant and successful group of animals on earth, inhabiting both terrestrial and aquatic habitats. -
A Primer on Limnology, Second Edition
BIOLOGICAL PHYSICAL lake zones formation food webs variability primary producers light chlorophyll density stratification algal succession watersheds consumers and decomposers CHEMICAL general lake chemistry trophic status eutrophication dissolved oxygen nutrients ecoregions biological differences The following overview is taken from LAKE ECOLOGY OVERVIEW (Chapter 1, Horne, A.J. and C.R. Goldman. 1994. Limnology. 2nd edition. McGraw-Hill Co., New York, New York, USA.) Limnology is the study of fresh or saline waters contained within continental boundaries. Limnology and the closely related science of oceanography together cover all aquatic ecosystems. Although many limnologists are freshwater ecologists, physical, chemical, and engineering limnologists all participate in this branch of science. Limnology covers lakes, ponds, reservoirs, streams, rivers, wetlands, and estuaries, while oceanography covers the open sea. Limnology evolved into a distinct science only in the past two centuries, when improvements in microscopes, the invention of the silk plankton net, and improvements in the thermometer combined to show that lakes are complex ecological systems with distinct structures. Today, limnology plays a major role in water use and distribution as well as in wildlife habitat protection. Limnologists work on lake and reservoir management, water pollution control, and stream and river protection, artificial wetland construction, and fish and wildlife enhancement. An important goal of education in limnology is to increase the number of people who, although not full-time limnologists, can understand and apply its general concepts to a broad range of related disciplines. A primary goal of Water on the Web is to use these beautiful aquatic ecosystems to assist in the teaching of core physical, chemical, biological, and mathematical principles, as well as modern computer technology, while also improving our students' general understanding of water - the most fundamental substance necessary for sustaining life on our planet.