Extreme Environments Select for Reproductive Assurance: Evidence from Evening Primroses (Oenothera) Margaret E.K

Total Page:16

File Type:pdf, Size:1020Kb

Extreme Environments Select for Reproductive Assurance: Evidence from Evening Primroses (Oenothera) Margaret E.K University of Connecticut OpenCommons@UConn EEB Articles Department of Ecology and Evolutionary Biology 2011 Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera) Margaret E.K. Evans Museum National d'Histoire Naturelle David J. Hearn Towson University Kathryn E. Theiss University of Connecticut - Storrs, [email protected] Karen Cranston National Evolutionary Synthesis Center Kent E. Holsinger University of Connecticut - Storrs, [email protected] See next page for additional authors Follow this and additional works at: https://opencommons.uconn.edu/eeb_articles Part of the Botany Commons, and the Evolution Commons Recommended Citation Evans, Margaret E.K.; Hearn, David J.; Theiss, Kathryn E.; Cranston, Karen; Holsinger, Kent E.; and Donoghue, Michael J., "Extreme environments select for reproductive assurance: evidence from evening primroses (Oenothera)" (2011). EEB Articles. 24. https://opencommons.uconn.edu/eeb_articles/24 Authors Margaret E.K. Evans, David J. Hearn, Kathryn E. Theiss, Karen Cranston, Kent E. Holsinger, and Michael J. Donoghue This article is available at OpenCommons@UConn: https://opencommons.uconn.edu/eeb_articles/24 1 2 3 4 Extreme environments select for reproductive assurance: 5 evidence from evening primroses ( Oenothera ) 6 7 8 9 Margaret E. K. Evans 1, 2, 3 10 David J. Hearn 4 11 Kathryn E. Theiss 5 12 Karen Cranston 6 13 Kent E. Holsinger 5 14 Michael J. Donoghue 3 15 16 17 1 Author for correspondence 18 19 2 Current address: 20 Origin, Structure, and Evolution of Biodiversity UMR 7205 21 Museum National d’Histoire Naturelle 22 16 rue Buffon 23 75231 Paris cedex 05 24 [email protected] 25 (+33)140793366 (ph) 26 (+33)140793342 (fax) 27 28 29 30 3 Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 31 06511 32 4 Department of Biological Sciences, Towson University, 8000 York Road, Towson, MD 33 21252 34 5 Department of Ecology and Evolutionary Biology, University of Connecticut, 75 N. 35 Eagleville Road, 36 U-3043, Storrs, CT 06269 37 6 National Evolutionary Synthesis Center, 2024 W. Main Street, A200, Durham, NC 27705 38 39 40 41 Total word count: 3,894 42 Introduction: 774 43 Materials and Methods: 1,181 44 Results: 548 45 Discussion: 1,197 46 Acknowledgements: 81 1 47 1 Table, 2 Figures 48 Supporting Information: 1 Table 2 49 Summary 50 51 • Competing evolutionary forces shape plant breeding systems (e.g. , inbreeding 52 depression, reproductive assurance). Which of these forces prevails in a given 53 population or species is predicted to depend upon such factors as life history, 54 ecological conditions, and geographical context. Here we examined two such 55 predictions: that self-compatibility should be associated with (1) the annual life 56 history or (2) extreme climatic conditions. 57 • We analyzed data from a clade of plants remarkable for variation in breeding 58 system, life history and climatic conditions ( Oenothera , sections Anogra and 59 Kleinia , Onagraceae). We used a phylogenetic comparative approach and 60 Bayesian or hybrid Bayesian tests to account for phylogenetic uncertainty. GIS- 61 based climate data and ecological niche modeling allowed us to quantify 62 climatic conditions. 63 • Breeding system and reproductive lifespan are not correlated in Anogra +Kleinia . 64 Instead, self-compatibility is associated with the extremes of temperature in the 65 coldest part of the year and precipitation in the driest part of the year. 66 • In the 60 years since this pattern was anticipated, this is the first demonstration of 67 a relationship between the evolution of self-compatibility and climatic extremes. 68 We discuss possible explanations for this pattern and possible implications with 69 respect to anthropogenic climate change. 70 71 3 72 Key words: Baker’s Law, climate, evolution, life history, Oenothera , plant breeding 73 system, reproductive assurance, self-compatibility 4 74 Introduction 75 Puzzling over variation and evolution of plant breeding systems has occupied 76 some of the greatest thinkers of evolutionary biology (Darwin, 1876; Fisher, 1941; 77 Dobzhansky, 1950; Stebbins, 1950, 1957). A central pattern of interest is variation in 78 inbreeding vs. outbreeding, which is thought to arise from competing evolutionary 79 forces. On one hand, the negative fitness consequences of inbreeding (known as 80 inbreeding depression) favor outbreeding (Nagylaki, 1976; Lande & Schemske, 1985; 81 Charlesworth and Charlesworth, 1987). In many plants, self-incompatibility enforces 82 outcrossing, so that self-fertilization, the most extreme form of inbreeding, is impossible. 83 Phylogenetic analyses suggest that there have been relatively few origins of self- 84 incompatibility in seed plants (Weller et al., 1995; Igic & Kohn, 2001; Steinbachs & 85 Holsinger, 2002; Igic et al., 2008), whereas change to self-compatibility is described as 86 the most common evolutionary transition experienced by flowering plant lineages 87 (Stebbins, 1974). On the other hand, self-compatibility can be advantageous if it 88 provides “reproductive assurance”: a plant that finds itself without mates or pollinators 89 may still be able to reproduce (Darwin, 1876; Lloyd, 1979, 1992; Fausto et al., 2001; 90 Weber & Goodwillie, 2009). These two selective factors, inbreeding depression and 91 reproductive assurance, are thought to be among the most important acting on plant 92 breeding systems (Lloyd, 1979; Holsinger, 1996, 2000; Eckert et al., 2006). 93 Which of these competing forces wins out in shaping the breeding system of a 94 particular species or population is context-dependent, including factors such as life 95 history, ecological conditions, and geographical context. For example, it’s thought that 96 selection for reproductive assurance should be stronger in plants that have just one 97 opportunity to reproduce in their lifetime (annuals, monocarpic perennials) compared 5 98 to plants that have several chances to reproduce (polycarpic perennials; Morgan & 99 Schoen, 1997; Morgan, 2001). Thus annuals should be more likely than perennials to 100 evolve self-compatibility, whereas perennials should be more likely to retain self- 101 incompatibility (Stebbins, 1950; pp 176-181). This prediction has been borne out in some 102 surveys of plant breeding systems (Barrett et al., 1996) but not others (Raven, 1979). 103 Ecological conditions are also thought to modify selection on plant breeding 104 systems. Insect pollinator abundance can be low under cold conditions, i.e. , at high 105 elevations and latitudes, which might increase selection for reproductive assurance in 106 the plants found there (Moldencke, 1979; Kalin Arroyo, 1985; Korner, 1999; but see 107 Garcia-Camacho & Totland, 2009). Extremely arid conditions are associated with 108 variation in reproductive success (Beatley, 1974; Kadmon & Schmida, 1990; Philippi, 109 1993; Clauss & Venable, 2000; Schemske & Bierzychudek, 2001), which may generate 110 selection for reproductive assurance. Stebbins (1950) generalized this by suggesting 111 that extreme conditions should favor the evolution of selfing: “selection in favor of self- 112 fertilization is very likely to occur in all annuals and other short-lived plants living in 113 deserts, alpine or arctic regions, or other extreme environments”. Lloyd (1992) made a 114 similar association between environmental conditions (extreme temperatures, high 115 latitudes and altitudes) and selfing. 116 Here we evaluate patterns of covariation and coevolution of reproductive 117 lifespan (annual vs. iteroparous perennial), breeding system, and climatic conditions in 118 a clade of plants found in Western North America: Oenothera sections Anogra and 119 Kleinia (Onagraceae). This group of 19 taxa is remarkable for variation in climatic 120 conditions, life history, and breeding system (Table 1). Some of the Anogra +Kleinia taxa 121 are found in low-elevation deserts of the southwestern U. S., others in semi-arid 6 122 grasslands, and others in alpine meadows in the Rocky Mountain region (Wagner et al., 123 2007; Evans et al., 2009). Ten of the Anogra +Kleinia taxa are self-incompatible, four are 124 polymorphic in breeding system (either among or within populations), and five are self- 125 compatible (Klein, 1970; Raven, 1979; Theiss et al., 2010). In this same group, ten are 126 perennial, two are variable in life history, and seven are annual (Klein, 1970; Evans et al., 127 2005; Wagner et al., 2007). This variation makes the Anogra +Kleinia clade an excellent 128 group in which to evaluate coevolution of (1) breeding system and reproductive 129 lifespan and (2) breeding system and climate. We use a molecular phylogenetic 130 comparative approach to account for non-independence of taxa. Because of the 131 young age of the Anogra +Kleinia radiation (crown date within the last one million years; 132 Evans et al., 2009), there is considerable phylogenetic uncertainty (see Fig. 1a), which 133 we account for using a sample from the posterior distribution of Bayesian phylogenetic 134 trees. We use GIS-based climate data and ecological niche modeling to quantify the 135 climatic conditions where the Anogra +Kleinia taxa are found. Using the combination of 136 phylogenetic hypotheses, trait data, and climatic niche estimates, we evaluate the 137 predictions that (1) the perennial habit should be associated with self-incompatibility 138 and the annual habit with self-compatibility and (2) self-compatibility should be 139
Recommended publications
  • Sewall Wright's Adaptive Landscapes: 1932 Vs. 1988
    Biol Philos (2008) 23:591–603 DOI 10.1007/s10539-008-9124-z Sewall Wright’s adaptive landscapes: 1932 vs. 1988 Massimo Pigliucci Received: 13 November 2007 / Accepted: 16 July 2008 / Published online: 6 August 2008 Ó Springer Science+Business Media B.V. 2008 Abstract Sewall Wright introduced the metaphor of evolution on ‘‘adaptive landscapes’’ in a pair of papers published in 1931 and 1932. The metaphor has been one of the most influential in modern evolutionary biology, although recent theo- retical advancements show that it is deeply flawed and may have actually created research questions that are not, in fact, fecund. In this paper I examine in detail what Wright actually said in the 1932 paper, as well as what he thought of the matter at the very end of his career, in 1988. While the metaphor is flawed, some of the problems which Wright was attempting to address are still with us today, and are in the process of being reformulated as part of a forthcoming Extended Evolutionary Synthesis. Keywords Adaptive landscapes Evolutionary theory Genetic drift Natural selection Á Á Á The idea of an adaptive landscape is arguably the most influential metaphor in evolutionary biology after Darwin’s own parallel between natural and artificial selection. It is commonly presented in textbooks (Hartl and Clark 1989; Futuyma 1998) and has inspired a wealth of (largely theoretical) research (Kauffman and Levin 1987; Conrad 1990; Schluter and Nychka 1994; Whitlock 1995; Coyne et al. 1997; Gavrilets 1997; Svensson and Sinervo 2000; Hadany and Beker 2003; Jones et al. 2004; Kramer and Donohue 2006; Prusinkiewicz et al.
    [Show full text]
  • Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia Arvensis
    fpls-12-633979 February 16, 2021 Time: 19:16 # 1 ORIGINAL RESEARCH published: 22 February 2021 doi: 10.3389/fpls.2021.633979 Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis Edited by: Mercedes Sánchez-Cabrera1*†‡, Francisco Javier Jiménez-López1‡, Eduardo Narbona2, Verónica S. Di Stilio, Montserrat Arista1, Pedro L. Ortiz1, Francisco J. Romero-Campero3,4, University of Washington, Karolis Ramanauskas5, Boris Igic´ 5, Amelia A. Fuller6 and Justen B. Whittall7 United States 1 2 Reviewed by: Department of Plant Biology and Ecology, Faculty of Biology, University of Seville, Seville, Spain, Department of Molecular 3 Stacey Smith, Biology and Biochemical Engineering, Pablo de Olavide University, Seville, Spain, Institute for Plant Biochemistry 4 University of Colorado Boulder, and Photosynthesis, University of Seville – Centro Superior de Investigación Científica, Seville, Spain, Department 5 United States of Computer Science and Artificial Intelligence, University of Seville, Seville, Spain, Department of Biological Science, 6 Carolyn Wessinger, University of Illinois at Chicago, Chicago, IL, United States, Department of Chemistry and Biochemistry, Santa Clara 7 University of South Carolina, University, Santa Clara, CA, United States, Department of Biology, College of Arts and Sciences, Santa Clara University, United States Santa Clara, CA, United States *Correspondence: Mercedes Sánchez-Cabrera Anthocyanins are the primary pigments contributing to the variety of flower colors among [email protected] angiosperms and are considered essential for survival and reproduction. Anthocyanins † ORCID: Mercedes Sánchez-Cabrera are members of the flavonoids, a broader class of secondary metabolites, of which orcid.org/0000-0002-3786-0392 there are numerous structural genes and regulators thereof.
    [Show full text]
  • Relationships Among Levels of Biodiversity and the Relevance of Intraspecific Diversity in Conservation – a Project Synopsis F
    ARTICLE IN PRESS Perspectives in Plant Ecology, Evolution and Systematics Perspectives in Plant Ecology, Evolution and Systematics 10 (2008) 259–281 www.elsevier.de/ppees Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation – a project synopsis F. Gugerlia,Ã, T. Englischb, H. Niklfeldb, A. Tribschc,1, Z. Mirekd, M. Ronikierd, N.E. Zimmermanna, R. Holdereggera, P. Taberlete, IntraBioDiv Consortium2,3 aWSL Swiss Federal Research Institute, Zu¨rcherstrasse 111, 8903 Birmensdorf, Switzerland bDepartment of Biogeography, University of Vienna, Rennweg 14, 1030 Wien, Austria cDepartment of Systematic and Evolutionary Botany, Rennweg 14, 1030 Wien, Austria dDepartment of Vascular Plant Systematics, Institute of Botany, Polish Academy of Science, Krako´w, Lubicz 46, 31-512 Krako´w, Poland eLaboratoire d’Ecologie Alpine (LECA), CNRS UMR 5553, University Joseph Fourier, BP 53, 2233 Rue de la Piscine, 38041 Grenoble Cedex 9, France Received 11 June 2007; received in revised form 4 June 2008; accepted 9 July 2008 Abstract The importance of the conservation of all three fundamental levels of biodiversity (ecosystems, species and genes) has been widely acknowledged, but only in recent years it has become technically feasible to consider intraspecific diversity, i.e. the genetic component to biodiversity. In order to facilitate the assessment of biodiversity, considerable efforts have been made towards identifying surrogates because the efficient evaluation of regional biodiversity would help in designating important areas for nature conservation at larger spatial scales. However, we know little about the fundamental relationships among the three levels of biodiversity, which impedes the formulation of a general, widely applicable concept of biodiversity conservation through surrogates.
    [Show full text]
  • PAULETTE F. BIERZYCHUDEK Professor of Biology William Swindells, Sr
    PAULETTE F. BIERZYCHUDEK Professor of Biology William Swindells, Sr. Professor of Natural Science Lewis & Clark College, Portland, OR 97219 Phone: (503) 768-7522; FAX: (503) 768-7658 e-mail: [email protected] Education: Ph.D. 1981, Cornell University: ecology and evolutionary biology B.S. cum laude 1974, University of Washington: botany B.A. cum laude 1974, University of Washington: zoology 1969-1971, attended University of Chicago (no degree received) Positions Held: 2003-2005, 2009-2010: Chair, Dept. of Biology, Lewis & Clark College 1994-present: Professor of Biology, Lewis & Clark College 2002-2003: Visiting Professor, University of California at Santa Cruz 1993: Professor of Biology, Pomona College 1990-1993: Chair, Department of Biology, Pomona College 1986-1993: Associate Professor of Biology, Pomona College 1987: Visiting Professor of Biology, University of Chicago 1983-1984: Visiting Professor of Botany, Duke University 1982-1993: Botany faculty, Claremont Graduate School 1980-1986: Assistant Professor of Biology, Pomona College Honors and Awards: 2011: David Savage Award for Service to Lewis & Clark College 1994: named William Swindells, Sr. Professor in the Natural Sciences, Lewis & Clark College 1991: Wig Award for Teaching, Pomona College 1991: Sears-Roebuck Foundation Teaching Excellence and Campus Leadership Award 1990: named John and Magdalena Dexter Professor of Botany, Pomona College External Funding: 2010-2011: Oregon Zoo Foundation ($2,718) ''Disentangling evolutionary relationships for Speyeria zerene hippolyta, the Oregon silverspot butterfly.'' (in collaboration with Greta Binford) 2007-2009: M. J. Murdock Trust ($46,000) “Restoring habitat for the endangered Oregon silverspot butterfly”. 2006: National Fish and Wildlife Foundation’s Native Plant Conservation Initiative ($31,487) “Restoring habitat for endangered butterflies”.
    [Show full text]
  • Vascular Flora of the Liebre Mountains, Western Transverse Ranges, California Steve Boyd Rancho Santa Ana Botanic Garden
    Aliso: A Journal of Systematic and Evolutionary Botany Volume 18 | Issue 2 Article 15 1999 Vascular flora of the Liebre Mountains, western Transverse Ranges, California Steve Boyd Rancho Santa Ana Botanic Garden Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Boyd, Steve (1999) "Vascular flora of the Liebre Mountains, western Transverse Ranges, California," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 18: Iss. 2, Article 15. Available at: http://scholarship.claremont.edu/aliso/vol18/iss2/15 Aliso, 18(2), pp. 93-139 © 1999, by The Rancho Santa Ana Botanic Garden, Claremont, CA 91711-3157 VASCULAR FLORA OF THE LIEBRE MOUNTAINS, WESTERN TRANSVERSE RANGES, CALIFORNIA STEVE BOYD Rancho Santa Ana Botanic Garden 1500 N. College Avenue Claremont, Calif. 91711 ABSTRACT The Liebre Mountains form a discrete unit of the Transverse Ranges of southern California. Geo­ graphically, the range is transitional to the San Gabriel Mountains, Inner Coast Ranges, Tehachapi Mountains, and Mojave Desert. A total of 1010 vascular plant taxa was recorded from the range, representing 104 families and 400 genera. The ratio of native vs. nonnative elements of the flora is 4:1, similar to that documented in other areas of cismontane southern California. The range is note­ worthy for the diversity of Quercus and oak-dominated vegetation. A total of 32 sensitive plant taxa (rare, threatened or endangered) was recorded from the range. Key words: Liebre Mountains, Transverse Ranges, southern California, flora, sensitive plants. INTRODUCTION belt and Peirson's (1935) handbook of trees and shrubs. Published documentation of the San Bernar­ The Transverse Ranges are one of southern Califor­ dino Mountains is little better, limited to Parish's nia's most prominent physiographic features.
    [Show full text]
  • THEODOSIUS DOBZHANSKY January 25, 1900-December 18, 1975
    NATIONAL ACADEMY OF SCIENCES T H E O D O S I U S D O B ZHANSKY 1900—1975 A Biographical Memoir by F R A N C I S C O J . A Y A L A Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1985 NATIONAL ACADEMY OF SCIENCES WASHINGTON D.C. THEODOSIUS DOBZHANSKY January 25, 1900-December 18, 1975 BY FRANCISCO J. AYALA HEODOSIUS DOBZHANSKY was born on January 25, 1900 Tin Nemirov, a small town 200 kilometers southeast of Kiev in the Ukraine. He was the only child of Sophia Voinarsky and Grigory Dobrzhansky (precise transliteration of the Russian family name includes the letter "r"), a teacher of high school mathematics. In 1910 the family moved to the outskirts of Kiev, where Dobzhansky lived through the tumultuous years of World War I and the Bolshevik revolu- tion. These were years when the family was at times beset by various privations, including hunger. In his unpublished autobiographical Reminiscences for the Oral History Project of Columbia University, Dobzhansky states that his decision to become a biologist was made around 1912. Through his early high school (Gymnasium) years, Dobzhansky became an avid butterfly collector. A schoolteacher gave him access to a microscope that Dob- zhansky used, particularly during the long winter months. In the winter of 1915—1916, he met Victor Luchnik, a twenty- five-year-old college dropout, who was a dedicated entomol- ogist specializing in Coccinellidae beetles.
    [Show full text]
  • Plant-Environment Interactions: from Sensory Plant Biology to Active
    Signaling and Communication in Plants Series Editors František Baluška Department of Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, D-53115 Bonn, Germany Jorge Vivanco Center for Rhizosphere Biology, Colorado State University, 217 Shepardson Building, Fort Collins, CO 80523-1173, USA František Baluška Editor Plant-Environment Interactions From Sensory Plant Biology to Active Plant Behavior Editor František Baluška Department of Plant Cell Biology IZMB University of Bonn Kirschallee 1 D-53115 Bonn Germany email: [email protected] ISSN 1867-9048 ISBN 978-3-540-89229-8 e-ISBN 978-3-540-89230-4 DOI: 10.1007/978-3-540-89230-4 Library of Congress Control Number: 2008938968 © 2009 Springer-Verlag Berlin Heidelberg This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer-Verlag. Violations are liable for prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany Printed on acid-free paper 9 8 7 6 5 4 3 2 1 springer.com František Baluška dedicates this book to Prof.
    [Show full text]
  • Population Genetic and Morphological Studies in a Hybrid Zone Between Two Subspecies of Tephroseris Helenitis (L.) B
    Population genetic and morphological studies in a hybrid zone between two subspecies of Tephroseris helenitis (L.) B. NORD. (Asteraceae) at the northern fringe of the Alps Masterarbeit Zur Erlangung des Mastergrades an der Naturwissenschaftlichen Fakultät der Paris-Lodron-Universität Salzburg eingereicht von Georg Pflugbeil Gutachter: Univ.-Prof. Dr.rer.nat. Hans-Peter Comes Fachbereich: Organismische Biologie Salzburg, November 2012 ii “Is it all ready? Right. Come on then. Back to creation. We mustn't waste any more time. They'll think I've lost control again and put it all down to evolution.” Supreme Being in “Time Bandits” (1981) iii iv Contents Abstract ......................................................................................................................................... ix Zusammenfassung ........................................................................................................................ xi 1. Introduction .......................................................................................................................... 1 1.1. General introduction ..................................................................................................... 1 1.2. Aims of the study .......................................................................................................... 4 2. Material and methods ........................................................................................................... 6 2.1. Study system ................................................................................................................
    [Show full text]
  • Leptosiphon and Flower Color: Investigating Color Acquisition in Polemoniaceae Using Phylogenetics Margarita Hernandez A,B, Jacob B
    Leptosiphon and flower color: investigating color acquisition in Polemoniaceae using phylogenetics Margarita Hernandez a,b, Jacob B. Landis a,c, Douglas E. Soltis a,c, Pamela S. Soltis a a Florida Museum of Natural History, b College of Agriculture and Life Sciences, c Department of Biology, University of Florida Transitions in flower color are asymmetric over evolutionary time, with some transitions more favorable than others. Several selective pressures and mechanisms involving pollinators often drive these color changes, while other forces such as genetic drift and pleiotropic effects may drive others. In this project, we investigated transitions in flower color in Leptosiphon (Polemoniaceae). Leptosiphon comprises 38 species and has a center of distribution in California. Based on our initial analyses, it appears that flower color (blue/purple, pink, and yellow) has been gained in many independent transitions from a white-flowered ancestor. A well-supported species-level phylogeny will allow for better mapping of floral characteristics. To refine phylogenetic relationships, plant material was obtained from field, herbaria, and greenhouse collections for 197 accessions, representing all 38 species, plus Phlox as an outgroup. We selected 96 samples, including all species and each color morph for a targeted gene capture protocol using MYbaits, a procedure that allows custom design of baits. Probe sequences were created through a reciprocal blast using four transcriptomes (two species of Phlox, Fouqueria macdouglaii, and Ternstroemia gymanthera) and the Arabidopsis genome. One hundred probes were created, with markers with large introns discarded. After gene capture, samples were multiplexed and sequenced with Illumina. Reads were assembled, and phylogenetic analyses were conducted on concatenated and individual gene data sets.
    [Show full text]
  • A Checklist of Vascular Plants Endemic to California
    Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 3-2020 A Checklist of Vascular Plants Endemic to California James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "A Checklist of Vascular Plants Endemic to California" (2020). Botanical Studies. 42. https://digitalcommons.humboldt.edu/botany_jps/42 This Flora of California is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A LIST OF THE VASCULAR PLANTS ENDEMIC TO CALIFORNIA Compiled By James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State University Arcata, California 13 February 2020 CONTENTS Willis Jepson (1923-1925) recognized that the assemblage of plants that characterized our flora excludes the desert province of southwest California Introduction. 1 and extends beyond its political boundaries to include An Overview. 2 southwestern Oregon, a small portion of western Endemic Genera . 2 Nevada, and the northern portion of Baja California, Almost Endemic Genera . 3 Mexico. This expanded region became known as the California Floristic Province (CFP). Keep in mind that List of Endemic Plants . 4 not all plants endemic to California lie within the CFP Plants Endemic to a Single County or Island 24 and others that are endemic to the CFP are not County and Channel Island Abbreviations .
    [Show full text]
  • Transcriptome and Biochemical Analysis of a Flower Color Polymorphism in Silene Littorea (Caryophyllaceae)
    ORIGINAL RESEARCH published: 29 February 2016 doi: 10.3389/fpls.2016.00204 Transcriptome and Biochemical Analysis of a Flower Color Polymorphism in Silene littorea (Caryophyllaceae) Inés Casimiro-Soriguer 1, 2*, Eduardo Narbona 1, M. L. Buide 1, José C. del Valle 1 and Justen B. Whittall 3 1 Department of Molecular Biology and Biochemical Engineering, Pablo de Olavide University, Seville, Spain, 2 Department of Plant Biology and Ecology, University of Seville, Seville, Spain, 3 Department of Biology, Santa Clara University, College of Arts and Sciences, Santa Clara, CA, USA Flower color polymorphisms are widely used as model traits from genetics to ecology, yet Edited by: determining the biochemical and molecular basis can be challenging. Anthocyanin-based Stefan De Folter, flower color variations can be caused by at least 12 structural and three regulatory genes CINVESTAV-IPN, Mexico in the anthocyanin biosynthetic pathway (ABP). We use mRNA-Seq to simultaneously Reviewed by: sequence and estimate expression of these candidate genes in nine samples of Silene Kevin Davies, New Zealand Institute for Plant and littorea representing three color morphs (dark pink, light pink and white) across three Food Research, New Zealand developmental stages in hopes of identifying the cause of flower color variation. We Annette Becker, Justus-Liebig-University Gieβen, identified 29 putative paralogs for the 15 candidate genes in the ABP. We assembled Germany complete coding sequences for 16 structural loci and nine of ten regulatory loci. Among *Correspondence: these 29 putative paralogs, we identified 622 SNPs, yet only nine synonymous SNPs in Inés Casimiro-Soriguer Ans had allele frequencies that differentiated pigmented petals (dark pink and light pink) [email protected] from white petals.
    [Show full text]
  • Alluvial Scrub Vegetation of Southern California, a Focus on the Santa Ana River Watershed in Orange, Riverside, and San Bernardino Counties, California
    Alluvial Scrub Vegetation of Southern California, A Focus on the Santa Ana River Watershed In Orange, Riverside, and San Bernardino Counties, California By Jennifer Buck-Diaz and Julie M. Evens California Native Plant Society, Vegetation Program 2707 K Street, Suite 1 Sacramento, CA 95816 In cooperation with Arlee Montalvo Riverside-Corona Resource Conservation District (RCRCD) 4500 Glenwood Drive, Bldg. A Riverside, CA 92501 September 2011 TABLE OF CONTENTS Introduction ................................................................................................................................... 1 Background and Standards .......................................................................................................... 1 Table 1. Classification of Vegetation: Example Hierarchy .................................................... 2 Methods ........................................................................................................................................ 3 Study Area ................................................................................................................................3 Field Sampling ..........................................................................................................................3 Figure 1. Study area map illustrating new alluvial scrub surveys.......................................... 4 Figure 2. Study area map of both new and compiled alluvial scrub surveys. ....................... 5 Table 2. Environmental Variables ........................................................................................
    [Show full text]