Fixation and Fixatives: Roles and Functions—A Short Review

Total Page:16

File Type:pdf, Size:1020Kb

Fixation and Fixatives: Roles and Functions—A Short Review Published online: 2019-08-29 THIEME Review Article 51 Fixation and Fixatives: Roles and Functions—A Short Review Himanshu Singh1 Kundendu Arya Bishen1 Deepti Garg2 Hemani Sukhija1 Dheeraj Sharma1 1 Urvashi Tomar 1Department of Oral and Maxillofacial Pathology, Index Institute of Address for correspondence Kundendu Arya Bishen, MDS, PhD, Dental Sciences, Malwanchal University, Indore, Madhya Pradesh, India Department of Oral and Maxillofacial Pathology, Index Institute 2Department of Oral and Maxillofacial Pathology, Bhojia Dental of Dental Sciences, Malwanchal University,Indore 452016, College, Baddi, Himachal Pradesh, India Madhya Pradesh, India (e-mail: [email protected]). Dent J Adv Stud 2019;7:51–55 Abstract Fixation is considered as physiochemical process where cells or tissues are fixed chem- Keywords ically. Fixatives perform various functions such as prevention of autolysis and tissue ► fixatives putrefaction. Various fixative agents include formaldehyde, glutaraldehyde, osmium ► fixation tetroxide, glyoxal, picric acid, and so on. A detailed search on PubMed, Google scholar, ► formaldehyde and Scopus database showed very few articles on “fixation” and “fixative.” Keeping this ► glutaraldehyde fact in mind, a comprehensive review on fixation and fixatives was prepared. The main ► glyoxal aim of this review is to make pathologists and laboratory technicians familiar with the ► osmium tetroxide basic aspects and different types of fixatives. ► picric acid Introduction as putrefaction (bacterial attack) of tissues. Autolysis seems to be a frequent issue in enzyme-rich tissues, and rigorously Fixation is known as a physiochemical process in which cells autolyzed tissue does not get stained properly for microscop- or tissues are fixed chemically. As a result, the tissue or cell ic examination. On the other hand, bacterial invasion can be can combat the successive treatment by different reagents blocked by following the strict antiseptic methods. 1 with negligible disfigurement of morphology. Another important function is conserving the association An ideal fixation involves complicated progression of in between cells and extracellular substances. Fixatives sta- chemical episodes. An ideal fixative is presumed to transmit bilize the cell component by making them insoluble, there- mechanical toughness to tissue so that it resists destruction by reducing the alteration by subsequent treatment and due to further processing steps. It prevents the autolysis, also preventing osmotic damage of tissue, which may cause putrefaction of tissue as well as tissue component degrada- shrinkage or swelling, thus preserving the cellular and tissue 1,2 tion. Fixation should be able to preserve the cellular struc- structure in life-like state. 2 ture and tissue architecture in life-like manner. Fixation also performs various other functions such as For the purpose of tissue processing in the histopatholo- making tissue firm, so that gross cutting becomes much easi- gy, fixation of tissue is considered as necessary and essential er. Also, fixatives help make the tissue more easily permeable step. Fixation amends the physio-chemical state of tissues so for subsequent reagents and play a role in emphasizing the that it remodels the reactiveness of cellular components for dissimilarity in refractive index and thus help in increased 3 stains. Fixatives can be classified in different ways, as shown visibility of different elements of tissue.1,2,4 in ►Tables 1 –3. Factors Affecting Fixation and Fixatives Functions of Fixative Length of Fixation Fixatives perform various functions. The primary function The ideal time of fixation is experimentally determined for of fixatives is to prevent autolysis (enzymes attack) as well different types of tissue. If time period for fixation is longer, received DOI https://doi.org/ ©2019 Bhojia Dental College and April 6, 2019 10.1055/s-0039-1693098 Hospital affiliated to Himachal accepted ISSN 2321-1482. Pradesh University May 20, 2019 published online August 29, 2019 52 Fixation and Fixatives Singh et al. Table 1 Classification of fixatives based on chemical Size composition Tissue thickness is one of the important factors for fixation. If the sample size is large, it is unfavorable for the fixative Fixatives Examples to penetrate and reach to the deeper part of the tissue, 1. Physical agents Heat, microwaves which would result in autolysis of epithelium.4 Ideally 4- to 2. Aldehydes Formaldehyde, acrolein, 6-mm-thick specimen is best suited for complete penetration glutaraldehyde by fixatives. 3. Coagulants Methyl alcohol, ethyl alcohol, acetic acid Osmolarity 4. Oxidizing agents Osmium tetroxide If osmolarity of tissue as well as fixative is same, it will pre- 5. Miscellaneous Picric acid, mercuric chloride vent swelling or shrinkage of the tissue.7 Table 2 Classification of fixatives based on number of struc- Various Fixating Agents Used in tures fixed Histopathology Fixatives Examples Formaldehyde or Formalin 1. Simple fixatives e.g., Formaldehyde, picric acid, Formaldehyde was discovered in 1859 by Butlerov. In 1889 osmium tetroxide Ttrillat was the first who manufactured formaldehyde com- 2. Compound fixatives e.g., Bouin’s fluid, formol saline, mercially as industrial reagent. In 1892, Ferdinand Blum recog- Zenker’s fluid nized that formalin could give benefit when used as a fixative.8,9 The most routinely used solution for fixation of tis- Table 3 Classification of fixatives based on type of structures sue—10% formalin solution v/v—is nothing but an aqueous fixed suspension of formaldehyde In 10% neutral buffered form, formaldehyde is found to be the most commonly used fix- Fixatives Examples ative in pathology. Reaction between the formaldehyde 1. Histochemical Formaldehyde, glutaraldehyde, vapor and macromolecules of tissue seems to be complex. Form- fixatives fixatives aldehyde reacts with nucleic acids as well as proteins, and 2. Microanatom- Bouin’s fluid, 10% formalin, Zenker’s it penetrates between nucleic acids and proteins and forms ical fixatives fluid, formol calcium, Heidenhain’s stabilized shell of nucleic acid-protein complex.10-13 As com- susa, Helly’s fluid, Rossman’s fluid, pared with other fixatives, formaldehyde causes lesser tissue 3. Cytologic Champy’s fluid, glacial acetic acid, shrinkage, with exceptions being acetone and ethanol. Form- fixatives alcohol, formol saline, Carnoy’s fluid, Clarke’s fluid, Newcomer’s fluid, aldehyde seems to harden tissue more when compared with Flemming’s fluid other fixatives. The lipids are conserved, but carbohydrates are not fixed by formaldehyde.4 it results in over–cross-linking, and samples become brittle. Formalin comprises 37 to 40% formaldehyde and 60 to If time period for fixation is short, sufficient amount of pen- 63% water by weight. After continuous storage for long peri- etration in tissues and cross-linking will not occur.4 For oral ods, accumulations of white deposits are observed in the soft tissue, overnight fixation is sufficient. solution. These are the precipitates of paraformaldehyde. By storing formalin at low temperature, these white deposits Temperature can be avoided. Also, 10% methanol may be added into the Temperature of fixative during fixation may affect the tis- formalin to minimize the polymerization reaction that pro- sue architecture. Rate of fixation is increased with increase duces paraformaldehyde precipitate. It also contains a slight in temperature, but increased temperature will also increase amount of formate ions. These are obtained from Cannizza- autolysis rate. If temperature is low or decreased, the dif- ro reaction. In this reaction, two molecules of formaldehyde fusion rate also decreases, which results in extended pen- react together. One molecule condenses to form methanol 14 etration time.5 For electron microscopic studies, 0°to 4°C is and second molecule gets oxidized to form formic acid. The appraise as ideal temperature. solution is acidic in reaction because of formic acid, but acid- ic nature of solution can be counterbalanced with incorpora- 15 Concentration tion of magnesium carbonate in little proportion. Fixative agents need prolonged time for fixation if concen- tration is low. If concentrations of fixing agent are high, it Glutaraldehyde results in damaging of cellular structures as well as obliterat- Glutaraldehyde was found in 1963 by Sabatini et al as par- ed enzyme activities.6 Different fixatives have different ideal ticular fixative for ultrastructural researches. Glutaraldehyde concentration that is determined experimentally; for exam- comprises two aldehyde groups that are divided by three ple, ideal fixative for oral soft tissue is formalin used in 10% methylene bridges. Although penetration rate of glutaralde- concentrated solution. hyde is found to be slower when compared with formaldehyde, Dental Journal of Advance Studies Vol. 07 No. 2/2019 Fixation and Fixatives Singh et al. 53 glutaraldehyde is more effective cross-linker for proteins than Glyoxal formaldehyde and it also inhibits enzyme activity.16-18 Glyoxal was first advocated in 1943. They are also known When polymerization of aqueous solution of glutaralde- as ethanedial or oxalaldehyde. Glyoxal is considered as hyde occurs, it forms oligomeric and cyclic compounds, and alternative fixative to formalin because it is a dialdehyde also forms glutaric acid by oxidation. For stability, it requires in nature. It is a bifunctional aldehyde. Its individual alde- pH of 5 and storage at 4°C.19,20 At room temperature, glutaral-
Recommended publications
  • A Guide to Proper Fixation of Tissue Specimens for Eventual Immunostaining (09/2015)
    A Guide to Proper Fixation of Tissue Specimens for Eventual Immunostaining (09/2015) 1. First and most important - the original tissue sample must be of good quality. Factors such as warm ischemic time, the time delay between tissue excision and fixation, etc. are important. Ideally, tissues should be acquired as close to still being viable as possible, and put into fixative as soon as possible following excision. Delays lead to cell death, autolysis, and loss of tissue and cell integrity with concomitant losses of immunostaining (e.g. due to proteolysis of the antigen). If acquiring animal tissues, consider performing perfusion fixation prior to organ/tissue removal if it is an option. 2. Once the tissue sample is obtained, proper fixation technique is the next critical component of generating high quality fixed tissues that have the best chance to succeed in immumostaining. There are a number of important guidelines here: (a) Formalin solution slowly inactivates over time, thus fresh formalin should always be used. Freshly prepared buffered formaldehyde solution is the absolute best, but good results can certainly be obtained with commercial formalin solutions that are not too old. (b) Diffusion of formalin solution into the tissue is relatively slow- a rate of approximately 1 mm per hour. Thicker specimens take longer to fix, and such specimens fix in a gradient fashion - fixing fastest and most completely from the tissue surface towards the interior. The practical impact of this is that if a specimen is too thick, then the interior may not become fully fixed, or that significant autolysis can occur before the fixative diffuses into the area and finally does fix the interior.
    [Show full text]
  • Improved Spatial Resolution by Induced Live Cell and Organelle Swelling in Hypotonic Solutions Received: 9 April 2019 Astha Jaiswal1, Christian H
    www.nature.com/scientificreports OPEN Improved spatial resolution by induced live cell and organelle swelling in hypotonic solutions Received: 9 April 2019 Astha Jaiswal1, Christian H. Hoerth1, Ana M. Zúñiga Pereira1,2 & Holger Lorenz1 Accepted: 23 August 2019 Induced morphology changes of cells and organelles are by far the easiest way to determine precise Published: xx xx xxxx protein sub-locations and organelle quantities in light microscopy. By using hypotonic solutions to swell mammalian cell organelles we demonstrate that precise membrane, lumen or matrix protein locations within the endoplasmic reticulum, Golgi and mitochondria can reliably be established. We also show the beneft of this approach for organelle quantifcations, especially for clumped or intertwined organelles like peroxisomes and mitochondria. Since cell and organelle swelling is reversible, it can be applied to live cells for successive high-resolution analyses. Our approach outperforms many existing imaging modalities with respect to resolution, ease-of-use and cost-efectiveness without excluding any co- utilization with existing optical (super)resolution techniques. Scientifc bioimaging aims to reveal scientifcally relevant information. Besides the mere metrics of biomaterial like cells, organelles, or even sub-organelle structures, more informative are data addressing protein sub-locations and interactions. Especially in the spatio-temporal context of cellular dynamics the precise protein sub-location within the membranous organelle system of the cell is crucial. To know that a certain protein is located within a particular organelle is ofen not sufcient. More precise information is needed, for example whether the protein is membrane-bound, or not. Tis puts a technical challenge on bioimaging since many organelles’ membrane assemblies are well below the micrometer range in size and distance.
    [Show full text]
  • PERIODIC ACID SCHIFF (PAS) PROTOCOL PRINCIPLE: This Stain
    PERIODIC ACID SCHIFF (PAS) PROTOCOL PRINCIPLE: This stain is used for the demonstration of glycogen. Tissue sections are first oxidized by periodic acid. The oxidative process results in the formation of aldehyde groupings through carbon-to-carbon bond cleavage. Free hydroxyl groups should be present for oxidation to take place. Oxidation is completed when it reaches the aldehyde stage. The aldehyde groups are detected by the Schiff reagent. A colorless, unstable dialdehyde compound is formed and then transformed to the colored final product by restoration of the quinoid chromophoric grouping. QUALITY ASSURANCE: The PAS stain with diastase or -amylase digestion has histochemical specificity for glycogen. Skeletal muscle normally contains glycogen and is often recommended as a positive control tissue. SPECIMEN REQUIRED: Snap frozen human striated muscle. (Use the isopentane freezing method previously described.) METHOD: Fixation: None, use snap frozen tissue. Technique: Cut 10 - 16 micron (12 µm) sections in cryostat from snap frozen biopsy. Attach one or more sections to a No.1_, 22 mm square coverslip. Equipment: Ceramic staining rack - Thomas Scientific #8542-E40 Columbia staining dish - Thomas Scientific #8542-C12 Columbia staining dish (jar) - Thomas Scientific #8542-E30 Forceps Latex gloves Reagents: • Absolute alcohol (100% ethanol) - Quantum, FLAMMABLE store at room temp. in a flammable cabinet • Glacial Acetic Acid -Fisher A507-500, CORROSIVE store at room temperature • Amylase - Sigma A-6505, store at room temperature • Chloroform - Baxter 049-4, FLAMMABLE CARCINOGEN store at room temperature in a flammable cabinet) • Periodic Acid - Sigma P7875, store at room temperature • Permount - Fisher SP15-100, FLAMMABLE HEALTH HAZARD • Reagent alcohol, ACS - histological Fisher A962-4 or HPLC A995, FLAMMABLE, TOXIC,TERATOGENIC, store at room temperature In flammable cabinet • Schiff Reagent - Harleco 6073/71, store at room temperature • Xylenes - Fisher #HC700-1GAL, FLAMMABLE, store room temperature in flammable cabinet) 1 Solutions: I.
    [Show full text]
  • Adaptations at the Cell and Organelle Level for Utilizing Sunlight1-2
    ADAPTATIONS AT THE CELL AND ORGANELLE LEVEL FOR UTILIZING SUNLIGHT1-2 W. H. CAMPBELL, P. ROBERTIE, R. H. BROWN3 AND C. C. BLACK Biochemistry Department, University of Georgia, Athens, Georgia 30602 ABSTRACT The discovery of multiple pathways of carbon dioxide assimilation and dissimilation in higher plants has drastically changed the research and thinking in plant biology. The theme is developed that adaptations within photosynthesis are of fundamental importance in plants and that changes in this dominant metabolic process arc apt to result in strong and immediate selection advantages in the course of plant evolution. Data are presented on the variations in photosynthetic CO2 assimilation in the reductive pentose phosphate cycle, the C4-dicarboxylic acid cycle, and in Crassulacean acid metabolism. Photo- synthetic studies with primitive plants such as P silo turn nudum indicate a metabolism similar to Cj-dicarboxylic acid may have arisen in this primitive plant. In order to establish a perspective on the metabolic processes in plants which might be subject to adaptation, we have considered the activities of major meta- bolic processes such as photosynthesis, photorespiration, dark respiration, transpira- tion, nitrogen fixation, ion uptake, and the synthesis of proteins, lipids, cell walls. Many of these metabolic activities are common to all of life forms and probably have been subject to common adaptations; for example, respiration or protein, lipid, and polysaccharide synthesis. Certain metabolic processes however, are unique to plants and to certain bacteria; among these are photosynthesis, photo- respiration, transpiration, nitrogen fixation, and ion uptake from soil. Unfor- tunately, quantitative data on these activities are not available on a comparable basis with a single plant or on a single plant organ, such as a leaf or a fruit.
    [Show full text]
  • Sample Preparation for Fluorescence Microscopy: an Introduction Concepts and Tips for Better Fixed Sample Imaging Results
    White Paper Sample Preparation for Fluorescence Microscopy: An Introduction Concepts and Tips for Better Fixed Sample Imaging Results By Paul Held, Laboratory Manager, Applications Dept., BioTek Instruments, Inc. Products: Cytation 3 and Cytation 5 Multiple processing steps are required to prepare tissue culture cells for fluorescence microscopy. Experiments are generally classified as being either live or fixed cell microscopy. Fluorescence microscopy of live cells uses either genetically encoded fluorescent proteins (e.g. GFP, mcherry, YFP, RFP, etc.) or cell membrane-permeable, non-toxic fluorescent stains. Fluorescence microscopy of fixed cells uses a fixative agent that renders the cells dead, but maintains cellular structure, allowing the use of specific antibodies and dyes to investigate cell morphology and structure. Appropriate sample preparation is necessary to ensure high quality images are captured. Here we describe a number of concepts and considerations regarding the sample preparation process that can assist with automated digital fluorescence microscopy of fixed cells. Cell Fixation The goal of fixation is to maintain cellular structure as much as possible to that of the native or unfixed state during the processing steps and subsequent imaging. There are a number of fixation methods suitable for fluorescence microscopy that fall into two basic categories: aldehyde fixatives and alcohol fixatives. Organic solvents such as alcohols and acetone remove lipids and dehydrate the cells, while precipitating the proteins on the cellular architecture. Cross-linking aldehyde reagents form intermolecular bridges, normally through free amino groups, creating a network of linked antigens. Cross-linkers preserve cell structure better than organic solvents, but may reduce the antigenicity of some cell components, and require a permeabilization step to allow the antibody access to the specimen.
    [Show full text]
  • Fixation and Fixatives – Factors Influencing Chemical Fixation, Formaldehyde and Glutaraldehyde
    Fixation and Fixatives – Factors influencing chemical fixation, formaldehyde and glutaraldehyde Author: Geoffrey Rolls edited by Hiram 3-25-18 This Fixation and Fixatives series covers the factors that influence the rate and effectiveness of tissue fixation as well as looking at two common fixatives: formaldehyde (histology) and glutaraldehyde (ultrastructural electron microscopy studies). Factors influencing chemical fixation There are a number of factors that will influence the rate and effectiveness of tissue fixation. Temperature: Increasing the temperature of fixation will increase the rate of diffusion of the fixative into the tissue and speed up the rate of chemical reaction between the fixative and tissue elements. It can also potentially increase the rate of tissue degeneration in unfixed areas of the specimen. For light microscopy initial fixation is usually carried out at room temperature and this may be followed by further fixation at temperatures up to 45°C during tissue processing. This is really a compromise that appears to be widely accepted to produce good quality morphological preservation. Microwave fixation may involve the use of higher temperatures, up to 65°C, but for relatively short periods. See Part 5 for further discussion. Time: The optimal time for fixation will vary between fixatives. For fixation to occur the fixative has to penetrate, by diffusion, to the centre of the specimen and then sufficient time has to be allowed for the reactions of fixation to occur. Both diffusion time and reaction time depend on the particular reagent used and the optimum time will vary from fixative to fixative. In busy diagnostic laboratories there is considerable pressure to reduce turnaround time and this can result in incompletely-fixed tissues being processed.
    [Show full text]
  • Ltnit 8 Fixation and Staining Techniques
    LTNIT 8 FIXATION AND STAINING TECHNIQUES Structure 8.1 Introduction Objectives 8.2 Introduction to Steps Involved in Permanent Mounts of Plants and Animals Tissue Processing Processing Whole Mounts 8.3 Fixatives and Their Action 8.4 Primary Fixative Groups Coagulant Fixative Non-Coagulant Fixative 8.5 Composite Fixatives Plant Fixatives Animal Fixatives Fixatives and Safety 8.6 Alcohol Series Use of Alcohol Series in Slide Preparation Basis for Procedure of Staining of Permanent Mount 8.7 Some Staining Theory and Methods Basic Dyes Acid Dyes Amphoteric Dyes Types of Staining Methods Mordanting 8.8 Formulary of Reagents and Stains Fixatives in Common Use Stains in Common Use Grades of Alcohol Animal Ringer Solution Animal Physiological Saline Solution 8.9 Summary 8.1 0 Terminal Questions 8.1 1 Answers 8.1 INTRODUCTION - - - - --- - - - - -- - - - - In the previous unit you have already studied about basic techniques of slide preparations. You learnt how slides should be cleaned, cared for, labelled and stored. You also learnt the preparation as well as staining of temporary mounts of plant and animal tissues using squash technique (root-tip) and smear techniques (human cheek cells). The present unit deals briefly with the steps involved in preparing permanent slides of tissues and whole mounts of plants and animals. This unit however deals mainly with the various chemicals that are used for fixing and staining of animal and plant tissues for both temporary and permanent mounts. So in this unit you will study the theory, nature, preparation as well as storage of fixatives, alcohol series, mordants and stains that are used in the preparation of whole mounts or tissue mounts of plants and animals.
    [Show full text]
  • Quantification of Protein Mobility and Associated Reshuffling of 2 Cytoplasm During Chemical Fixation 3 4 5 Authors: 6 Jan Huebinger *, Jessica Spindler, Kristin J
    bioRxiv preprint doi: https://doi.org/10.1101/410670; this version posted September 8, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Quantification of protein mobility and associated reshuffling of 2 cytoplasm during chemical fixation 3 4 5 Authors: 6 Jan Huebinger *, Jessica Spindler, Kristin J. Holl, Björn Koos 7 8 9 Affiliations 10 Department of Systemic Cell Biology, Max Planck Institute of Molecular Physiology, 11 Otto-Hahn-Str.11, 44227 Dortmund, Germany 12 13 * Correspondence to: [email protected] 14 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/410670; this version posted September 8, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 17 Abstract 18 19 To understand cellular functionalities, it is essential to unravel spatio-temporal 20 patterns of molecular distributions and interactions within living cells. The 21 technological progress in fluorescence microscopy now allows in principle to measure 22 these patterns with sufficient spatial resolution. However, high resolution imaging 23 comes along with long acquisition times and high phototoxicity. Physiological live 24 cell imaging is therefore often unfeasible and chemical fixation is employed. 25 However, fixation methods have not been rigorously reviewed to preserve patterns at 26 the resolution at which they can be nowadays imaged.
    [Show full text]
  • 5.1 General Principles of Fixation and Types of Fixatives
    E-content for Programme: M.Sc. Zoology (Semester - II) Core Course (CC- 7): Biochemistry Unit V: Principles of Histology and Histochemistry 5.1 General principles of fixation and types of fixatives Prepared by: Dr. Richa Rani, MTech, PhD Assistant Professor Post Graduate Department of Zoology Patna University, Patna-800005 Contact:+91-6206450541 Email: [email protected] Intrahepatic neutrophils staining in 10% formalin fixed tissue Rani, Richa et al. AJP, 2017, 187, 2008-19 FIXATION A process used to preserve the constituents of cells and tissue so that they can withstand the subsequent treatment with various reagents with minimum loss of architecture. It is the most crucial step in the preparation of cells or tissues for microscopy analysis. It consists of two steps: Termination of ongoing biochemical reactions i.e. killing FIXATION (Cont’d) Stabilization of the cellular structure and composition i.e. preservation The process results in denaturation and coagulation of proteins in the tissues. The speed of fixation depends on the rate of diffusion of fixative into the tissue and the rate of chemical reactions with various components. Critical roles of Fixation To preserve and stabilize the cell morphology and tissue architecture in a “life-like state”. To prevent or arrest the degenerative processes. To prevent autolysis (tissue digestion by intracellular enzymes released when organelle membranes rupture) and bacterial decomposition (or putrefaction). Critical roles of Fixation (Cont’d) To enhance the refractive index of tissue constituents. To harden or strengthen the samples so that they can withstand the downstream staining procedures. To improve the optical differentiation of cells and tissues.
    [Show full text]
  • Glutaraldehyde: a Review of Its Fixative Effects on Nucleic Acids, Proteins, 2 Lipids, and Carbohydrates 3 4 Andrew T
    1 Glutaraldehyde: A review of its fixative effects on nucleic acids, proteins, 2 lipids, and carbohydrates 3 4 Andrew T. McKenzie1 (https://orcid.org/0000-0001-7462-4340) 5 6 1 Medical Scientist Training Program, Icahn School of Medicine at Mount Sinai, 7 NY, NY, USA 8 9 Correspondence to: 10 Andrew McKenzie 11 Email address: [email protected] 12 13 Abstract 14 15 Tissue banking methods such as brain banking often face a trade-off 16 between morphological and molecular preservation. For example, 17 cryopreservation is preferred for subsequent molecular assays, while fixation by 18 aldehyde crosslinking is commonly used for microscopy. Among aldehyde 19 fixatives, formaldehyde is often considered better for immunohistochemistry, 20 while glutaraldehyde is often considered better for electron microscopy. 21 However, it is unclear whether morphological versus molecular preservation 22 trade-offs reflect fundamental biology or technology limitations. As a window into 23 this discussion, in this narrative review, I evaluate the literature regarding the 24 effects of glutaraldehyde on molecular preservation, with an emphasis on 25 nervous system tissue. Available evidence suggests that crosslinking with 26 glutaraldehyde has minimal direct effects on most molecular features, with a few 27 critical exceptions such as protein conformation. On the other hand, 28 glutaraldehyde fixation frequently fails to retain non-directly crosslinked 29 molecules such as lipid and carbohydrate species during subsequent 30 dehydration steps. Further, as a result of probe diffusion limitations or strong 31 covalent interactions with glutaraldehyde, many molecules can be more difficult 32 to visualize or otherwise measure in tissue fixed with glutaraldehyde.
    [Show full text]
  • Modularity of a Carbon-Fixing Protein Organelle
    Modularity of a carbon-fixing protein organelle Walter Bonaccia, Poh K. Tengb, Bruno Afonsoa, Henrike Niederholtmeyera, Patricia Grobc, Pamela A. Silvera,d, and David F. Savageb,e,1 aDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115; bDepartment of Molecular and Cell Biology and cHoward Hughes Medical Institute, University of California, Berkeley, CA 94720; dWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115; and eDepartment of Chemistry, University of California, Berkeley, CA 94720 Edited* by Robert M. Stroud, University of California, San Francisco, CA, and approved November 17, 2011 (received for review May 31, 2011) Bacterial microcompartments are proteinaceous complexes that appear in roughly 20% of bacteria, suggesting the existence of catalyze metabolic pathways in a manner reminiscent of organelles. a large functional diversity of uncharacterized BMCs (10). Although microcompartment structure is well understood, much The CB was the first BMC to be discovered and remains a less is known about their assembly and function in vivo. We show model system for elucidating how BMCs assemble and function here that carboxysomes, CO2-fixing microcompartments encoded in the cell (11). Its shell is assembled from roughly 800 protein by 10 genes, can be heterologously produced in Escherichia coli. hexamers, which form the facets of the icosahedron, and 12 Expression of carboxysomes in E. coli resulted in the production pentamers, which form the vertices (8, 12). Inside the lumen of icosahedral complexes similar to those from the native host. In are the enzymes ribulose 1,5-bisphosphate carboxylase/oxygenase vivo, the complexes were capable of both assembling with carbox- (RuBisCO) and carbonic anhydrase (CA), which are directed to fi fi ysomal proteins and xing CO2.
    [Show full text]
  • Living up to Life Special Stain Kit Periodic Acid Schiff (PAS) Stain
    Living up to Life Special Stain Kit Periodic Acid Schiff (PAS) Stain Kit Catalog No: 38016SS4 Intended Use Staining Protocol (Microwave) For In Vitro Diagnostic Use. For Laboratory Use. Exercise caution when using the microwave to heat any solution or reagent. The microwave The reagents in this kit are intended for In Vitro use only. The PAS kit, when used with the must be properly ventilated to prevent the accumulation of fumes in the laboratory. Microwave appropriate histological procedures, may be used for the detection of specific carbohydrate transparent coplin jars and caps should be used during the staining process. The caps should containing molecules found in tissue sections. be loosely applied to prevent spills. Caps with ventilation holes also may be used. All microwaves should be used in accordance with the manufacturer’s instructions. The Probable Mode of Action procedures described here were performed using an Energy Beam Sciences H2250 laboratory Carbohydrates that contain adjacent hydroxyl (1, 2–glycol) groups are found in glycogen, microwave. All microwaved steps were conducted at a power setting of 800 watts unless neutral mucins as well as specific glycoproteins. The 1, 2-glycol groups are oxidized by periodic otherwise noted. Because of differences in microwave power and frequencies among various acid to produce adjacent aldehyde groups. The aldehyde groups react with the Schiff reagent models, it may be necessary to adjust power levels or times to achieve optimal results. which subsequently produces a bright magenta coloration in areas of tissue containing these 1. Deparaffinize with xylene or a xylene substitute and rehydrate through graded alcohols to carbohydrates.
    [Show full text]