Island Biogeography Lesson Plan
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Biogeography, Community Structure and Biological Habitat Types of Subtidal Reefs on the South Island West Coast, New Zealand
Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand SCIENCE FOR CONSERVATION 281 Biogeography, community structure and biological habitat types of subtidal reefs on the South Island West Coast, New Zealand Nick T. Shears SCIENCE FOR CONSERVATION 281 Published by Science & Technical Publishing Department of Conservation PO Box 10420, The Terrace Wellington 6143, New Zealand Cover: Shallow mixed turfing algal assemblage near Moeraki River, South Westland (2 m depth). Dominant species include Plocamium spp. (yellow-red), Echinothamnium sp. (dark brown), Lophurella hookeriana (green), and Glossophora kunthii (top right). Photo: N.T. Shears Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. Individual copies are printed, and are also available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Science & technical. © Copyright December 2007, New Zealand Department of Conservation ISSN 1173–2946 (hardcopy) ISSN 1177–9241 (web PDF) ISBN 978–0–478–14354–6 (hardcopy) ISBN 978–0–478–14355–3 (web PDF) This report was prepared for publication by Science & Technical Publishing; editing and layout by Lynette Clelland. Publication was approved by the Chief Scientist (Research, Development & Improvement Division), Department of Conservation, Wellington, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. When printing, recycled paper is used wherever possible. CONTENTS Abstract 5 1. Introduction 6 2. -
Effective Population Size and Genetic Conservation Criteria for Bull Trout
North American Journal of Fisheries Management 21:756±764, 2001 q Copyright by the American Fisheries Society 2001 Effective Population Size and Genetic Conservation Criteria for Bull Trout B. E. RIEMAN* U.S. Department of Agriculture Forest Service, Rocky Mountain Research Station, 316 East Myrtle, Boise, Idaho 83702, USA F. W. A LLENDORF Division of Biological Sciences, University of Montana, Missoula, Montana 59812, USA Abstract.ÐEffective population size (Ne) is an important concept in the management of threatened species like bull trout Salvelinus con¯uentus. General guidelines suggest that effective population sizes of 50 or 500 are essential to minimize inbreeding effects or maintain adaptive genetic variation, respectively. Although Ne strongly depends on census population size, it also depends on demographic and life history characteristics that complicate any estimates. This is an especially dif®cult problem for species like bull trout, which have overlapping generations; biologists may monitor annual population number but lack more detailed information on demographic population structure or life history. We used a generalized, age-structured simulation model to relate Ne to adult numbers under a range of life histories and other conditions characteristic of bull trout populations. Effective population size varied strongly with the effects of the demographic and environmental variation included in our simulations. Our most realistic estimates of Ne were between about 0.5 and 1.0 times the mean number of adults spawning annually. We conclude that cautious long-term management goals for bull trout populations should include an average of at least 1,000 adults spawning each year. Where local populations are too small, managers should seek to conserve a collection of interconnected populations that is at least large enough in total to meet this minimum. -
Routledge Handbook of Ecological and Environmental Restoration the Principles of Restoration Ecology at Population Scales
This article was downloaded by: 10.3.98.104 On: 26 Sep 2021 Access details: subscription number Publisher: Routledge Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: 5 Howick Place, London SW1P 1WG, UK Routledge Handbook of Ecological and Environmental Restoration Stuart K. Allison, Stephen D. Murphy The Principles of Restoration Ecology at Population Scales Publication details https://www.routledgehandbooks.com/doi/10.4324/9781315685977.ch3 Stephen D. Murphy, Michael J. McTavish, Heather A. Cray Published online on: 23 May 2017 How to cite :- Stephen D. Murphy, Michael J. McTavish, Heather A. Cray. 23 May 2017, The Principles of Restoration Ecology at Population Scales from: Routledge Handbook of Ecological and Environmental Restoration Routledge Accessed on: 26 Sep 2021 https://www.routledgehandbooks.com/doi/10.4324/9781315685977.ch3 PLEASE SCROLL DOWN FOR DOCUMENT Full terms and conditions of use: https://www.routledgehandbooks.com/legal-notices/terms This Document PDF may be used for research, teaching and private study purposes. Any substantial or systematic reproductions, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The publisher shall not be liable for an loss, actions, claims, proceedings, demand or costs or damages whatsoever or howsoever caused arising directly or indirectly in connection with or arising out of the use of this material. 3 THE PRINCIPLES OF RESTORATION ECOLOGY AT POPULATION SCALES Stephen D. -
Genetic and Demographic Dynamics of Small Populations of Silene Latifolia
Heredity (2003) 90, 181–186 & 2003 Nature Publishing Group All rights reserved 0018-067X/03 $25.00 www.nature.com/hdy Genetic and demographic dynamics of small populations of Silene latifolia CM Richards, SN Emery and DE McCauley Department of Biological Sciences, Vanderbilt University, PO Box 1812, Station B, Nashville, TN 37235, USA Small local populations of Silene alba, a short-lived herbac- populations doubled in size between samples, while others eous plant, were sampled in 1994 and again in 1999. shrank by more than 75%. Similarly, expected heterozygosity Sampling included estimates of population size and genetic and allele number increased by more than two-fold in diversity, as measured at six polymorphic allozyme loci. individual populations and decreased by more than three- When averaged across populations, there was very little fold in others. When population-specific change in number change between samples (about three generations) in and change in measures of genetic diversity were considered population size, measures of within-population genetic together, significant positive correlations were found be- diversity such as number of alleles or expected hetero- tween the demographic and genetic variables. It is specu- zygosity, or in the apportionment of genetic diversity within lated that some populations were released from the and among populations as measured by Fst. However, demographic consequences of inbreeding depression by individual populations changed considerably, both in terms gene flow. of numbers of individuals and genetic composition. Some Heredity (2003) 90, 181–186. doi:10.1038/sj.hdy.6800214 Keywords: genetic diversity; demography; inbreeding depression; gene flow Introduction 1986; Lynch et al, 1995), the interaction of genetics and demography could also influence population persistence How genetics and demography interact to influence in common species, because it is generally accepted that population viability has been a long-standing question in even many abundant species are not uniformly distrib- conservation biology. -
Evolutionary Restoration Ecology
ch06 2/9/06 12:45 PM Page 113 189686 / Island Press / Falk Chapter 6 Evolutionary Restoration Ecology Craig A. Stockwell, Michael T. Kinnison, and Andrew P. Hendry Restoration Ecology and Evolutionary Process Restoration activities have increased dramatically in recent years, creating evolutionary chal- lenges and opportunities. Though restoration has favored a strong focus on the role of habi- tat, concerns surrounding the evolutionary ecology of populations are increasing. In this con- text, previous researchers have considered the importance of preserving extant diversity and maintaining future evolutionary potential (Montalvo et al. 1997; Lesica and Allendorf 1999), but they have usually ignored the prospect of ongoing evolution in real time. However, such contemporary evolution (changes occurring over one to a few hundred generations) appears to be relatively common in nature (Stockwell and Weeks 1999; Bone and Farres 2001; Kin- nison and Hendry 2001; Reznick and Ghalambor 2001; Ashley et al. 2003; Stockwell et al. 2003). Moreover, it is often associated with situations that may prevail in restoration projects, namely the presence of introduced populations and other anthropogenic disturbances (Stockwell and Weeks 1999; Bone and Farres 2001; Reznick and Ghalambor 2001) (Table 6.1). Any restoration program may thus entail consideration of evolution in the past, present, and future. Restoration efforts often involve dramatic and rapid shifts in habitat that may even lead to different ecological states (such as altered fire regimes) (Suding et al. 2003). Genetic variants that evolved within historically different evolutionary contexts (the past) may thus be pitted against novel and mismatched current conditions (the present). The degree of this mismatch should then determine the pattern and strength of selection acting on trait variation in such populations (Box 6.1; Figure 6.1). -
The Political Biogeography of Migratory Marine Predators
1 The political biogeography of migratory marine predators 2 Authors: Autumn-Lynn Harrison1, 2*, Daniel P. Costa1, Arliss J. Winship3,4, Scott R. Benson5,6, 3 Steven J. Bograd7, Michelle Antolos1, Aaron B. Carlisle8,9, Heidi Dewar10, Peter H. Dutton11, Sal 4 J. Jorgensen12, Suzanne Kohin10, Bruce R. Mate13, Patrick W. Robinson1, Kurt M. Schaefer14, 5 Scott A. Shaffer15, George L. Shillinger16,17,8, Samantha E. Simmons18, Kevin C. Weng19, 6 Kristina M. Gjerde20, Barbara A. Block8 7 1University of California, Santa Cruz, Department of Ecology & Evolutionary Biology, Long 8 Marine Laboratory, Santa Cruz, California 95060, USA. 9 2 Migratory Bird Center, Smithsonian Conservation Biology Institute, National Zoological Park, 10 Washington, D.C. 20008, USA. 11 3NOAA/NOS/NCCOS/Marine Spatial Ecology Division/Biogeography Branch, 1305 East 12 West Highway, Silver Spring, Maryland, 20910, USA. 13 4CSS Inc., 10301 Democracy Lane, Suite 300, Fairfax, VA 22030, USA. 14 5Marine Mammal and Turtle Division, Southwest Fisheries Science Center, National Marine 15 Fisheries Service, National Oceanic and Atmospheric Administration, Moss Landing, 16 California 95039, USA. 17 6Moss Landing Marine Laboratories, Moss Landing, CA 95039 USA 18 7Environmental Research Division, Southwest Fisheries Science Center, National Marine 19 Fisheries Service, National Oceanic and Atmospheric Administration, 99 Pacific Street, 20 Monterey, California 93940, USA. 21 8Hopkins Marine Station, Department of Biology, Stanford University, 120 Oceanview 22 Boulevard, Pacific Grove, California 93950 USA. 23 9University of Delaware, School of Marine Science and Policy, 700 Pilottown Rd, Lewes, 24 Delaware, 19958 USA. 25 10Fisheries Resources Division, Southwest Fisheries Science Center, National Marine 26 Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, 27 USA. -
Genetic Diversity, Population Structure, and Effective Population Size in Two Yellow Bat Species in South Texas
Genetic diversity, population structure, and effective population size in two yellow bat species in south Texas Austin S. Chipps1, Amanda M. Hale1, Sara P. Weaver2,3 and Dean A. Williams1 1 Department of Biology, Texas Christian University, Fort Worth, TX, United States of America 2 Biology Department, Texas State University, San Marcos, TX, United States of America 3 Bowman Consulting Group, San Marcos, TX, United States of America ABSTRACT There are increasing concerns regarding bat mortality at wind energy facilities, especially as installed capacity continues to grow. In North America, wind energy development has recently expanded into the Lower Rio Grande Valley in south Texas where bat species had not previously been exposed to wind turbines. Our study sought to characterize genetic diversity, population structure, and effective population size in Dasypterus ega and D. intermedius, two tree-roosting yellow bats native to this region and for which little is known about their population biology and seasonal movements. There was no evidence of population substructure in either species. Genetic diversity at mitochondrial and microsatellite loci was lower in these yellow bat taxa than in previously studied migratory tree bat species in North America, which may be due to the non-migratory nature of these species at our study site, the fact that our study site is located at a geographic range end for both taxa, and possibly weak ascertainment bias at microsatellite loci. Historical effective population size (NEF) was large for both species, while current estimates of Ne had upper 95% confidence limits that encompassed infinity. We found evidence of strong mitochondrial differentiation between the two putative subspecies of D. -
Multilocus Estimation of Divergence Times and Ancestral Effective Population Sizes of Oryza Species and Implications for the Rapid Diversification of the Genus
Research Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus Xin-Hui Zou1, Ziheng Yang2,3, Jeff J. Doyle4 and Song Ge1 1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; 2Center for Computational and Evolutionary Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China; 3Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London, WC1E 6BT, UK; 4Department of Plant Biology, Cornell University, 412 Mann Library Building, Ithaca, NY 14853, USA Summary Author for correspondence: Despite substantial investigations into Oryza phylogeny and evolution, reliable estimates of Song Ge the divergence times and ancestral effective population sizes of major lineages in Oryza are Tel: +86 10 62836097 challenging. Email: [email protected] We sampled sequences of 106 single-copy nuclear genes from all six diploid genomes of Received: 2 January 2013 Oryza to investigate the divergence times through extensive relaxed molecular clock analyses Accepted: 8 February 2013 and estimated the ancestral effective population sizes using maximum likelihood and Bayesian methods. New Phytologist (2013) 198: 1155–1164 We estimated that Oryza originated in the middle Miocene (c.13–15 million years ago; doi: 10.1111/nph.12230 Ma) and obtained an explicit time frame for two rapid diversifications in this genus. The first diversification involving the extant F-/G-genomes and possibly the extinct H-/J-/K-genomes Key words: divergence time, Oryza, popula- occurred in the middle Miocene immediately after (within < 1 Myr) the origin of Oryza. -
Population Biology & Life Tables
EXERCISE 3 Population Biology: Life Tables & Theoretical Populations The purpose of this lab is to introduce the basic principles of population biology and to allow you to manipulate and explore a few of the most common equations using some simple Mathcad© wooksheets. A good introduction of this subject can be found in a general biology text book such as Campbell (1996), while a more complete discussion of pop- ulation biology can be found in an ecology text (e.g., Begon et al. 1990) or in one of the references listed at the end of this exercise. Exercise Objectives: After you have completed this lab, you should be able to: 1. Give deÞnitions of the terms in bold type. 2. Estimate population size from capture-recapture data. 3. Compare the following sets of terms: semelparous vs. iteroparous life cycles, cohort vs. static life tables, Type I vs. II vs. III survivorship curves, density dependent vs. density independent population growth, discrete vs. continuous breeding seasons, divergent vs. dampening oscillation cycles, and time lag vs. generation time in population models. 4. Calculate lx, dx, qx, R0, Tc, and ex; and estimate r from life table data. 5. Choose the appropriate theoretical model for predicting growth of a given population. 6. Calculate population size at a particular time (Nt+1) when given its size one time unit previous (Nt) and the corre- sponding variables (e.g., r, K, T, and/or L) of the appropriate model. 7. Understand how r, K, T, and L affect population growth. Population Size A population is a localized group of individuals of the same species. -
Can More K-Selected Species Be Better Invaders?
Diversity and Distributions, (Diversity Distrib.) (2007) 13, 535–543 Blackwell Publishing Ltd BIODIVERSITY Can more K-selected species be better RESEARCH invaders? A case study of fruit flies in La Réunion Pierre-François Duyck1*, Patrice David2 and Serge Quilici1 1UMR 53 Ӷ Peuplements Végétaux et ABSTRACT Bio-agresseurs en Milieu Tropical ӷ CIRAD Invasive species are often said to be r-selected. However, invaders must sometimes Pôle de Protection des Plantes (3P), 7 chemin de l’IRAT, 97410 St Pierre, La Réunion, France, compete with related resident species. In this case invaders should present combina- 2UMR 5175, CNRS Centre d’Ecologie tions of life-history traits that give them higher competitive ability than residents, Fonctionnelle et Evolutive (CEFE), 1919 route de even at the expense of lower colonization ability. We test this prediction by compar- Mende, 34293 Montpellier Cedex, France ing life-history traits among four fruit fly species, one endemic and three successive invaders, in La Réunion Island. Recent invaders tend to produce fewer, but larger, juveniles, delay the onset but increase the duration of reproduction, survive longer, and senesce more slowly than earlier ones. These traits are associated with higher ranks in a competitive hierarchy established in a previous study. However, the endemic species, now nearly extinct in the island, is inferior to the other three with respect to both competition and colonization traits, violating the trade-off assumption. Our results overall suggest that the key traits for invasion in this system were those that *Correspondence: Pierre-François Duyck, favoured competition rather than colonization. CIRAD 3P, 7, chemin de l’IRAT, 97410, Keywords St Pierre, La Réunion Island, France. -
Biogeography: an Ecosystems Approach (Geography 338)
WELCOME TO GEOGRAPHY/BOTANY 338: ENVIRONMENTAL BIOGEOGRAPHY Fall 2018 Schedule: Monday & Wednesday 2:30-3:45 pm, Humanities 1641 Credits: 3 Instructor: Professor Ken Keefover-Ring Email: [email protected] Office: Science Hall 115C Office Hours: Tuesday 3:00-4:00 pm & Wednesday 12:00-1:00 pm or by appointment Note: This course fulfills the Biological Science breadth requirement. COURSE DESCRIPTION: This course takes an ecosystems approach to understand how physical -- climate, geologic history, soils -- and biological -- physiology, evolution, extinction, dispersal, competition, predation -- factors interact to affect the past, present and future distribution of terrestrial biomes and all levels of biodiversity: ecosystems, species and genes. A particular focus will be placed on the role of disturbance and to recent human-driven climatic and land-cover changes and biological invasions on differences in historical and current distributions of global biodiversity. COURSE GOALS: • To learn patterns and mechanisms of local to global gene, species, ecosystem and biome distributions • To learn how past, current and future environmental change affect biogeography • To learn how humans affect geographic patterns of biodiversity • To learn how to apply concepts from biogeography to current environmental problems • To learn how to read and interpret the primary literature, that is, scientific articles in peer- reviewed journals. COURSE POLICY: I expect you to attend all lectures and come prepared to participate in discussion. I will take attendance. Please let me know if you need to miss three or more lectures. Please respect your fellow students, professor, and guest speakers and turn off the ringers on your cell phones and refrain from texting during class time. -
Equilibrium Theory of Island Biogeography: a Review
Equilibrium Theory of Island Biogeography: A Review Angela D. Yu Simon A. Lei Abstract—The topography, climatic pattern, location, and origin of relationship, dispersal mechanisms and their response to islands generate unique patterns of species distribution. The equi- isolation, and species turnover. Additionally, conservation librium theory of island biogeography creates a general framework of oceanic and continental (habitat) islands is examined in in which the study of taxon distribution and broad island trends relation to minimum viable populations and areas, may be conducted. Critical components of the equilibrium theory metapopulation dynamics, and continental reserve design. include the species-area relationship, island-mainland relation- Finally, adverse anthropogenic impacts on island ecosys- ship, dispersal mechanisms, and species turnover. Because of the tems are investigated, including overexploitation of re- theoretical similarities between islands and fragmented mainland sources, habitat destruction, and introduction of exotic spe- landscapes, reserve conservation efforts have attempted to apply cies and diseases (biological invasions). Throughout this the theory of island biogeography to improve continental reserve article, theories of many researchers are re-introduced and designs, and to provide insight into metapopulation dynamics and utilized in an analytical manner. The objective of this article the SLOSS debate. However, due to extensive negative anthropo- is to review previously published data, and to reveal if any genic activities, overexploitation of resources, habitat destruction, classical and emergent theories may be brought into the as well as introduction of exotic species and associated foreign study of island biogeography and its relevance to mainland diseases (biological invasions), island conservation has recently ecosystem patterns. become a pressing issue itself.