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												  The Coral Trait Database, a Curated Database of Trait Information for Coral Species from the Global Oceanswww.nature.com/scientificdata OPEN The Coral Trait Database, a curated SUBJECT CATEGORIES » Community ecology database of trait information for » Marine biology » Biodiversity coral species from the global oceans » Biogeography 1 2 3 2 4 Joshua S. Madin , Kristen D. Anderson , Magnus Heide Andreasen , Tom C.L. Bridge , , » Coral reefs 5 2 6 7 1 1 Stephen D. Cairns , Sean R. Connolly , , Emily S. Darling , Marcela Diaz , Daniel S. Falster , 8 8 2 6 9 3 Erik C. Franklin , Ruth D. Gates , Mia O. Hoogenboom , , Danwei Huang , Sally A. Keith , 1 2 2 4 10 Matthew A. Kosnik , Chao-Yang Kuo , Janice M. Lough , , Catherine E. Lovelock , 1 1 1 11 12 13 Osmar Luiz , Julieta Martinelli , Toni Mizerek , John M. Pandolfi , Xavier Pochon , , 2 8 2 14 Morgan S. Pratchett , Hollie M. Putnam , T. Edward Roberts , Michael Stat , 15 16 2 Carden C. Wallace , Elizabeth Widman & Andrew H. Baird Received: 06 October 2015 28 2016 Accepted: January Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to Published: 29 March 2016 an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository.
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												  MARINE FAUNA and FLORA of BERMUDA a Systematic Guide to the Identification of Marine OrganismsMARINE FAUNA AND FLORA OF BERMUDA A Systematic Guide to the Identification of Marine Organisms Edited by WOLFGANG STERRER Bermuda Biological Station St. George's, Bermuda in cooperation with Christiane Schoepfer-Sterrer and 63 text contributors A Wiley-Interscience Publication JOHN WILEY & SONS New York Chichester Brisbane Toronto Singapore ANTHOZOA 159 sucker) on the exumbrella. Color vari many Actiniaria and Ceriantharia can able, mostly greenish gray-blue, the move if exposed to unfavorable condi greenish color due to zooxanthellae tions. Actiniaria can creep along on their embedded in the mesoglea. Polyp pedal discs at 8-10 cm/hr, pull themselves slender; strobilation of the monodisc by their tentacles, move by peristalsis type. Medusae are found, upside through loose sediment, float in currents, down and usually in large congrega and even swim by coordinated tentacular tions, on the muddy bottoms of in motion. shore bays and ponds. Both subclasses are represented in Ber W. STERRER muda. Because the orders are so diverse morphologically, they are often discussed separately. In some classifications the an Class Anthozoa (Corals, anemones) thozoan orders are grouped into 3 (not the 2 considered here) subclasses, splitting off CHARACTERISTICS: Exclusively polypoid, sol the Ceriantharia and Antipatharia into a itary or colonial eNIDARIA. Oral end ex separate subclass, the Ceriantipatharia. panded into oral disc which bears the mouth and Corallimorpharia are sometimes consid one or more rings of hollow tentacles. ered a suborder of Scleractinia. Approxi Stomodeum well developed, often with 1 or 2 mately 6,500 species of Anthozoa are siphonoglyphs. Gastrovascular cavity compart known. Of 93 species reported from Ber mentalized by radially arranged mesenteries.
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												  Checklist of Fish and Invertebrates Listed in the CITES AppendicesJOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No.
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												  Patterns of Septal Biomineralization in Scleractinia Compared with Their 28S Rrna PhylogenyPBlackwell Publishingatterns Ltd. of septal biomineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework JEAN-PIERRE CUIF, GUILLAUME LECOINTRE, CHRISTINE PERRIN, ANNIE TILLIER & SIMON TILLIER Accepted: 2 December 2002 Cuif, J.-P., Lecointre, G., Perrin, C., Tillier, A. & Tillier, S. (2003). Patterns of septal bio- mineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework. — Zoologica Scripta, 32, 459–473. A molecular phylogeny of the Scleractinia is reconstructed from approximately 700 nucleo- tides of the 5′end of the 28S rDNA obtained from 40 species. A comparison of molecular phylogenic trees with biomineralization patterns of coral septa suggests that at least five clades are corroborated by both types of data. Agaricidae and Dendrophylliidae are found to be monophyletic, that is supported by microstructural data. Conversely, Faviidae and Caryophyl- liidae are found to be paraphyletic: Cladocora should be excluded from the faviids, whereas Eusmilia should be excluded from the caryophylliids. The conclusion is also supported by the positions, sizes and shapes of centres of calcification. The traditional Guyniidae are diphyletic, corroborating Stolarski’s hypothesis ‘A’. Some results from our most parsimonious trees are not strongly statistically supported but corroborated by other molecular studies and micro- structural observations. For example, in the scleractinian phylogenetic tree, there are several lines of evidence (including those from our data) to distinguish a Faviidae–Mussidae lineage and a Dendrophylliidae–Agaricidae–Poritidae–Siderastreidae lineage. From a methodological standpoint, our results suggest that co-ordinated studies creating links between biomineralization patterns and molecular phylogeny may provide an efficient working approach for a re- examination of scleractinian classification.
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												  Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E.
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												  The Genetic Identity of Dinoflagellate Symbionts in Caribbean OctocoralsCoral Reefs (2004) 23: 465-472 DOI 10.1007/S00338-004-0408-8 REPORT Tamar L. Goulet • Mary Alice CofFroth The genetic identity of dinoflagellate symbionts in Caribbean octocorals Received: 2 September 2002 / Accepted: 20 December 2003 / Published online: 29 July 2004 © Springer-Verlag 2004 Abstract Many cnidarians (e.g., corals, octocorals, sea Introduction anemones) maintain a symbiosis with dinoflagellates (zooxanthellae). Zooxanthellae are grouped into The cornerstone of the coral reef ecosystem is the sym- clades, with studies focusing on scleractinian corals. biosis between cnidarians (e.g., corals, octocorals, sea We characterized zooxanthellae in 35 species of Caribbean octocorals. Most Caribbean octocoral spe- anemones) and unicellular dinoñagellates commonly called zooxanthellae. Studies of zooxanthella symbioses cies (88.6%) hosted clade B zooxanthellae, 8.6% have previously been hampered by the difficulty of hosted clade C, and one species (2.9%) hosted clades B and C. Erythropodium caribaeorum harbored clade identifying the algae. Past techniques relied on culturing and/or identifying zooxanthellae based on their free- C and a unique RFLP pattern, which, when se- swimming form (Trench 1997), antigenic features quenced, fell within clade C. Five octocoral species (Kinzie and Chee 1982), and cell architecture (Blank displayed no zooxanthella cladal variation with depth. 1987), among others. These techniques were time-con- Nine of the ten octocoral species sampled throughout suming, required a great deal of expertise, and resulted the Caribbean exhibited no regional zooxanthella cla- in the differentiation of only a small number of zoo- dal differences. The exception, Briareum asbestinum, xanthella species. Molecular techniques amplifying had some colonies from the Dry Tortugas exhibiting zooxanthella DNA encoding for the small and large the E.
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												  Volume 2. AnimalsAC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations.
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												  New and Old Scleractinian Corals from JamaicaCORAL REEF PROJECT-PAPERS IN MEMORY OF DR. THOMAS F. GOREAU. 2. NEW AND OLD SCLERACTINIAN CORALS FROM JAMAICA JOHN W. WELLS Department of Geological Sciences, Cornell University, Ithaca, New York ABSTRACT The underwater studies of Jamaican reefs carried out during the past 17 years by the late T. F. Goreau and his colleagues have turned up a number of new species of scleractinian corals and disclosed the common occurrence at depth of several species previously thought to be rare. The new forms include one species of Madracis, one of Agaricia, three of Mycetophyllia, one of Gardineria, and new forms of Eusmilia fastigiata and Agaricia fragilis. Earlier named but poorly known species discussed and figured are: Agaricia undata (Ellis & Solander), Agaricia lamarcki Milne Edwards & Haime, A. tenuitolia (Dana), He/ioseris cucul/ata (Ellis & Solander), Colpophyllia breviseria/is Milne Edwards & Haime, Mycetophyllia danaana Milne Edwards & Haime, and Di- chacaenia stellaris Milne Edwards & Haime. INTRODUCTION During the course of an extended study of the corals and coral reefs of Jamaica by the late T. F. Goreau and his associates at the Discovery Bay Marine Laboratory, the distribution of the hermatypic and ahermatypic scleractinian corals has been a special concern, for while the occurrence and zonation of corals on the shallower parts of West Indian reefs is fairly well known, the situation at depth had been otherwise until the use of SCUBA equipment made possible detailed examination and collection to depths of as much as 100 meters. A preliminary list of the scleractinian corals of the Jamaican reefs was published by Gareau & Wells in 1967, in which the presence of several new species was indicated.
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												  Volume III of This Document)4.1.3 Coastal Migratory Pelagics Description and Distribution (from CMP Am 15) The coastal migratory pelagics management unit includes cero (Scomberomous regalis), cobia (Rachycentron canadum), king mackerel (Scomberomous cavalla), Spanish mackerel (Scomberomorus maculatus) and little tunny (Euthynnus alleterattus). The mackerels and tuna in this management unit are often referred to as ―scombrids.‖ The family Scombridae includes tunas, mackerels and bonitos. They are among the most important commercial and sport fishes. The habitat of adults in the coastal pelagic management unit is the coastal waters out to the edge of the continental shelf in the Atlantic Ocean. Within the area, the occurrence of coastal migratory pelagic species is governed by temperature and salinity. All species are seldom found in water temperatures less than 20°C. Salinity preference varies, but these species generally prefer high salinity. The scombrids prefer high salinities, but less than 36 ppt. Salinity preference of little tunny and cobia is not well defined. The larval habitat of all species in the coastal pelagic management unit is the water column. Within the spawning area, eggs and larvae are concentrated in the surface waters. (from PH draft Mackerel Am. 18) King Mackerel King mackerel is a marine pelagic species that is found throughout the Gulf of Mexico and Caribbean Sea and along the western Atlantic from the Gulf of Maine to Brazil and from the shore to 200 meter depths. Adults are known to spawn in areas of low turbidity, with salinity and temperatures of approximately 30 ppt and 27°C, respectively. There are major spawning areas off Louisiana and Texas in the Gulf (McEachran and Finucane 1979); and off the Carolinas, Cape Canaveral, and Miami in the western Atlantic (Wollam 1970; Schekter 1971; Mayo 1973).
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												  A Guide to the Identification of the Common Corals of St. CroixA Guide to the Identification of the Common Corals of St. Croix Thomas Suchanek Department of Biology University of California Davis, CA Converted to digital format by Thomas F. Barry (NOAA/RSMAS) in 2004. Copy available at the NOAA Miami Regional Library. Minor editorial changes may have been made. Guide to the Common Corals of St. Croix 197 A Guide to the Identification of the Common Corals of St. Croix Thomas Suchanek Dept. of Biology University of California Davis, CA INTRODUCTION This guide was designed as an aid in identifying both live and dead corals from St. Croix which form hard, calcium carbonate skeletons. This encompasses representatives both from the Class Anthozoa (the true or scleractinian corals) and from the Class Hydrozoa (hydrocorals). Representatives from the third class of Cnidaria, the Scyphozoa, produce no calcium carbonate skeletons and are not discussed. Of the 60 or so species of "stony" corals found in the western Atlantic region, this guide focuses on 37 species which are found relatively commonly on St. Croix. Other representatives which may be common in other locations such as St. Thomas, Puerto Rico, Jamaica or Florida, but are not common on St. Croix, have not been included. Various references listed at the end of the text include many of those other species. The guide is arranged in two sections. First is a descriptive section including taxonomic and natural history information on each species represented. Following that section is a series of plates which depict three conditions for each species. First is a habitat photo, as the coral colony would appear to a swimmer or diver approaching it in the field.
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												  Corals 4(D) PetitionBefore the Secretary of Commerce Petition for Protective Regulations Under Section 4(d) of the Endangered Species Act for the Conservation of Threatened Corals Pillar coral, Dendrogyra cylindrus. Photo credit: NOAA Fisheries Center for Biological Diversity 20 February 2020 Notice of Petition Wilbur Ross, Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave. NW Washington, D.C. 20230 Email: [email protected], [email protected] Dr. Neil Jacobs, Acting Under Secretary of Commerce for Oceans and Atmosphere U.S. Department of Commerce 1401 Constitution Ave. NW Washington, D.C. 20230 Email: [email protected] Chris Oliver, Assistant Administrator NOAA Fisheries 1315 East-West Highway Silver Spring, MD 20910 Email: [email protected] Petitioner: Kristin Carden, Ph.D./J.D. Oceans Program Scientist, on behalf of the Center for Biological Diversity 1212 Broadway #800 Oakland, CA 94612 Phone: 510.844.7100 x327 Email: [email protected] Sarah Uhlemann Senior Attorney & International Program Director, on behalf of the Center for Biological Diversity 2400 NW 80th Street, #146 Seattle, WA 98117 Phone: (206) 324-2344 Email: [email protected] ii Pursuant to Section 4(d) of the Endangered Species Act (ESA, Act), 16 U.S.C. § 1533(d), 50 C.F.R. § 424.10, and Section 553 of the Administrative Procedure Act, 5 U.S.C. § 553(e), the Center for Biological Diversity (Center) hereby petitions the Secretary of Commerce, acting through the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service (NMFS), to promulgate a rule under Section 4(d) of the ESA to provide for the conservation of the 20 threatened coral species listed under the ESA on 10 September 2014.
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												  Barcoding Corals: Limited by Interspecific Divergence, Not Intraspecific VariationMolecular Ecology Resources (2008) 8, 247–255 doi: 10.1111/j.1471-8286.2007.01996.x DNABlackwell Publishing Ltd BARCODING Barcoding corals: limited by interspecific divergence, not intraspecific variation T. L. SHEARER* and M. A. COFFROTH† *School of Biology, Georgia Institute of Technology, 310 Ferst Dr., Atlanta, GA 30332-0230, USA, †Department of Geology, State University of New York at Buffalo, 109 Cooke Hall, Buffalo, NY 14260, USA Abstract The expanding use of DNA barcoding as a tool to identify species and assess biodiversity has recently attracted much attention. An attractive aspect of a barcoding method to iden- tify scleractinian species is that it can be utilized on any life stage (larva, juvenile or adult) and is not influenced by phenotypic plasticity unlike morphological methods of species identification. It has been unclear whether the standard DNA barcoding system, based on cytochrome c oxidase subunit 1 (COI), is suitable for species identification of scleractinian corals. Levels of intra- and interspecific genetic variation of the scleractinian COI gene were investigated to determine whether threshold values could be implemented to discriminate conspecifics from other taxa. Overlap between intraspecific variation and interspecific diver- gence due to low genetic divergence among species (0% in many cases), rather than high levels of intraspecific variation, resulted in the inability to establish appropriate threshold values specific for scleractinians; thus, it was impossible to discern most scleractinian species using this gene. Keywords: COI, DNA barcoding, interspecific divergence, intraspecific variation, scleractinian coral, species identification Received 24 January 2007; revision accepted 15 August 2007 DNA barcoding has become an attractive, yet controversial et al.