Plant Parenthood 9Th - 12Th Grade
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BIOLOGY Monday 30 Jan 2017
BIOLOGY Monday 30 Jan 2017 Entry Task Find a seat. Take out your biology textbook & review Chpt 11. Agenda Housekeeping Chpt 11 Introduction Chpt 11 Vocabulary Gregor Mendel Video Housekeeping Welcome to the new semester. Chpt 11 Introduction Introduction to Genetics Essential Question: How does cellular information pass from one generation to another? Chpt 11 Objectives You will be able to answer the following questions. • What are the key vocabulary of genetics? • What is a Punnett square & how does it show the possible genotype & phenotype of offspring? • What are other patterns of inheritance? • What is epigenetics & its relation to environmental factors & the nature vs. nurture argument? Chpt 11 Vocabulary Complete the vocabulary foldable within your notebook. • Definitions should be written behind each word tab. • Section 11 vocabulary foldable can be located @ http://www.steilacoom.k12.wa.us/Page/5839 Complete the word association worksheet. • Fill in the circles with the appropriate word from the word list. BIOLOGY Tuesday 31 Jan 2017 Entry Task What is the phenotype for the pea? • Round & Green What are the possible genotypes for seed shape & seed color of the pea? • Seed shape: RR & Rr • Seed color: yy p. 310 Agenda Housekeeping Section 11.1 (The Work of Gregor Mendel) Amoeba Sisters Video Chpt 11 Workbook Housekeeping Chpt 11 exam scheduled for Friday, 10 Feb. • Kahoot review on Thursday, 9 Feb. Gregor Mendel Genes & Alleles: Dominant & Recessive Alleles: p. 310 Gregor Mendel Segregation: p. 311-312 Video Monohybrids and the Punnett Square Guinea Pigs (6:27): • Link: https://www.youtube.com/watch?v=i-0rSv6oxSY Chpt 11 Workbook Complete the workbook during the course of this unit. -
Biology Incomplete Dominance 5E Model Lesson
BIOLOGY INCOMPLETE DOMINANCE 5E MODEL LESSON Teacher: Expected Length of Lesson Topic: Unit: Heather Lesson: Incomplete Genetics Yarbrough 1 - 90 minute class Dominance SB3. Obtain, evaluate, and communicate information to analyze how biological traits are passed on to successive generations. Targeted Content Standards/ b. Use mathematical models to predict and explain patterns of inheritance. Element: (Clarification statement: Students should be able to use Punnett squares (Include the entire standard) (monohybrid and dihybrid crosses) and/or rules of probability, to analyze the following inheritance patterns: dominance, codominance, incomplete dominance.) L9-10RST2: Determine the central ideas or conclusions of a text; trace the text’s explanation or depiction of a complex process, phenomenon, or concept; provide an accurate summary of the text. L9-10RST7: Translate quantitative or technical information expressed in words in a text into visual form (e.g., a table or chart) and translate information expressed visually or mathematically (e.g., in an equation) into words. L9-10RST9: Compare and contrast findings presented in a text to those Targeted Literacy Skills or Standards: (include as many as your from other sources (including their own experiments), noting when the lesson incorporates) findings support or contradict previous explanations or accounts. L9-10WHST2: Write informative/explanatory texts, including the narration of historical events, scientific procedures/ experiments, or technical processes. d. Use precise language and domain-specific vocabulary to manage the complexity of the topic and convey a style appropriate to the discipline and context as well as to the expertise of likely readers. L9-10WHST4: Produce clear and coherent writing in which the development, organization, and style are appropriate to task, purpose, and audience. -
Npgrj Nprot 406 2517..2526
PROTOCOL Identification and analysis of essential Aspergillus nidulans genes using the heterokaryon rescue technique Aysha H Osmani, Berl R Oakley & Stephen A Osmani Department of Molecular Genetics, The Ohio State University, Columbus, Ohio 43210, USA. Correspondence should be addressed to S.A.O. ([email protected]) Published online 29 December 2006; corrected online 25 January 2007 (details online); doi:10.1038/nprot.2006.406 s In the heterokaryon rescue technique, gene deletions are carried out using the pyrG nutritional marker to replace the coding region of target genes via homologous recombination in Aspergillus nidulans. If an essential gene is deleted, the null allele is maintained in spontaneously generated heterokaryons that consist of two genetically distinct types of nuclei. One nuclear type has the essential gene deleted but has a functional pyrG allele (pyrG+). The other has the wild-type allele of the essential gene but lacks a functional pyrG allele (pyrG–). Thus, a simple growth test applied to the uninucleate asexual spores formed from primary transformants can natureprotocol / m identify deletions of genes that are non-essential from those that are essential and can only be propagated by heterokaryon rescue. o c . The growth tests also enable the phenotype of the null allele to be defined. Diagnostic PCR can be used to confirm deletions at the e r molecular level. This technique is suitable for large-scale gene-deletion programs and can be completed within 3 weeks. u t a n . w w INTRODUCTION w / / : One of the most fundamental pieces of information regarding the non-essential gene is deleted, the resulting strains are able to grow p t t function of any gene is whether the gene is essential or not. -
Genetics and Inheritance
26/01/2018 Genetics and Inheritance Dr Michelle Thunders [email protected] Key terms • Gene • Chromosome • Locus • Allele • Homozygous • Heterozygous • Genotype • Phenotype • Dominant • Recessive Human Cells Nuclei contain 46 chromosomes (23 pairs of homologous chromosomes) -- except gametes 44 = autosomes 2 = sex chromosomes XX= female guide expression of traits determineXY = male genetic sex 1 26/01/2018 Human chromosomes • number and size of chromosomes in a cell is the karyotype. • All somatic cells of an organism have the same karyotype. •Group A: Longest chromosomes with centromeres near middle (1,2,3) •Group B: Long chromosomes with centromeres toward one end. (4,5) •Group C: Medium sized chromosoems, meta- to submetacentric (6,7,8,9,10,11,12) •Group D: Moderately short, centromere to one end (an acrocentric may have a very short arm) (13,14,15) •Group E: Moderately short, metacentric to submetacentric (16,17,18) •Group F: Very short, metacentric (19,20) •Group G: Very short, acrocentric (21,22) •X: like the largest in group C •Y: very short, like a G group chromosome Complete Karyotype diploid onegenome from = eggtwo andsets ofone genetic from instructions sperm Marieb et al, 2007 2 26/01/2018 Gene Alleles • Chromosomes paired -- so genes paired (one from each parent) • Two matched genes at same location (locus)on chromosome = allele • Allele code for same or different form of trait • If two allele code for same trait = homozygous • If two allele different = heterozygous Alleles Example: Dimples determined by a dominant -
Dairy Crossbreeding—Deal Or No Deal? by Larry F
Dairy Crossbreeding—Deal or No Deal? by Larry F. Tranel, ISU Extension Dairy Field Specialist, NE and SE Iowa ISU Extension’s “Millionaire Model Farms” are practicing crossbreeding. Is the crossbreeding deal a good deal for your dairy? The answer “depends” on many variables. Do you want to maximize milk production per cow? Then the answer is “no deal” to dairy crossbreeding as straight Holsteins produce around 7-10% more milk per cow than their crossbred counterparts. Do you want to maximize combined fat and protein per cow? Then the answer is probably also “no deal” at this time as straight Holsteins produce an estimated 3-5% more fat plus protein in recent research data. On the surface, it sounds like crossbreeding is a no deal situation as a conscious decision must be made to sacrifice milk and component production per cow. However, there are many other variables to account for in the decision. For example, recognize an estimated 6% reduction in dry matter intake in the crossbreds with equal feed efficiency compared to a pure holstein. This 6% dry matter intake reduction (Holstein-Jersey cross) may equate to about three pounds of dry matter per cow per day or .5 ton of dry matter per cow per year. The cost per cow of feed savings is only about $75 which can compensate for 625 pounds of $12/cwt milk or 3% of the milk lost versus pure Holsteins. Thus, some of the lost milk is recovered in feed cost savings. Economic values also need to be put on other traits that become a part of the equation. -
Genetics in Harry Potter's World: Lesson 2
Genetics in Harry Potter’s World Lesson 2 • Beyond Mendelian Inheritance • Genetics of Magical Ability 1 Rules of Inheritance • Some traits follow the simple rules of Mendelian inheritance of dominant and recessive genes. • Complex traits follow different patterns of inheritance that may involve multiples genes and other factors. For example, – Incomplete or blended dominance – Codominance – Multiple alleles – Regulatory genes Any guesses on what these terms may mean? 2 Incomplete Dominance • Incomplete dominance results in a phenotype that is a blend of a heterozygous allele pair. Ex., Red flower + Blue flower => Purple flower • If the dragons in Harry Potter have fire-power alleles F (strong fire) and F’ (no fire) that follow incomplete dominance, what are the phenotypes for the following dragon-fire genotypes? – FF – FF’ – F’F’ 3 Incomplete Dominance • Incomplete dominance results in a phenotype that is a blend of the two traits in an allele pair. Ex., Red flower + Blue flower => Purple flower • If the Dragons in Harry Potter have fire-power alleles F (strong fire) and F’ (no fire) that follow incomplete dominance, what are the phenotypes for the following dragon-fire genotypes: Genotypes Phenotypes FF strong fire FF’ moderate fire (blended trait) F’F’ no fire 4 Codominance • Codominance results in a phenotype that shows both traits of an allele pair. Ex., Red flower + White flower => Red & White spotted flower • If merpeople have tail color alleles B (blue) and G (green) that follow the codominance inheritance rule, what are possible genotypes and phenotypes? Genotypes Phenotypes 5 Codominance • Codominance results in a phenotype that shows both traits of an allele pair. -
Roadmap • Optimal Mutation Rate • Dominance and Its Implications
Roadmap • Optimal mutation rate • Dominance and its implications { Why is an allele dominant or recessive? { Overdominance (heterozygote advantage) { Underdominance (heterozygote inferiority) One minute responses • Q: I don't understand degrees of freedom! (About six of these....) • Q: Show the calculation of µ and ν Degrees of freedom revisited Thanks to Patrick Runkel: http://blog.minitab.com/blog/statistics-and-quality-data-analysis/ what-are-degrees-of-freedom-in-statistics A a Total A 20 a 10 Total 15 15 One more look at degrees of freedom Fictional data for sickle-cell hemoglobin (alleles A and S) in African-American adults Normal AA 400 Carrier AS 90 Affected SS 10 • Suppose I told you: { How many people I sampled { How many of each allele I found { How many AS carriers I found • Are there any possible surprises left in the data? (AA? SS?) • This is why there is only 1 df Mu and nu • µ (mu, forward mutation rate) { mutation rate per site is observed { rate per significant site in gene is: { rate per site x number of significant sites • ν (nu, back mutation rate) { mutation rate per site is observed { need the right nucleotide (1/3 chance) { rate per site x 1/3 Is mutation good or bad? • Most mutations have no fitness effect • Of those that do, most are bad • Most organisms expend significant energy trying to avoid mutations (DNA proofreading, etc) • Are organisms trying (and failing) to reach a mutation rate of zero? • Could there be selection in favor of a non-zero rate? Transposons as mutagens • Transposons are genetic elements that -
Enzyme Null Alleles in Natural Populations of Drosophila Melanogaster: Frequencies in a North Carolina Population (Allozymes/Enzyme Deficiencies) ROBERT A
Proc. Nati. Acad. Sci. USA Vol. 77, No. 2, pp. 1091-1095, February 1980 Genetics Enzyme null alleles in natural populations of Drosophila melanogaster: Frequencies in a North Carolina population (allozymes/enzyme deficiencies) ROBERT A. VOELKER, CHARLES H. LANGLEY, ANDREW J. LEIGH BROWN*, SEIDO OHNISHI, BARBARA DICKSON, ELIZABETH MONTGOMERY, AND SANDRA C. SMITHt Laboratory of Animal Genetics, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709 Communicated by C. Clark Cockerham, November 26,1979 ABSTRACT A Raleigh, NC, population of Drosophila that locus will be underestimated and, concomitantly, the melanogaster was sampled for the presence of enzyme null al- detrimental'effects of nulls on fitness will be overestimated. leles at 25 loci. No nulls were found at any of five X-linked loci. This paper reports data on the frequency of null alleles (see Nulls were recovered at 13 of 20 autosomal loci; the weighted mean frequency for all 20 autosomal loci was estimated to be Methods for definition) at 25 allozyme loci in a Raleigh, NC, 0.0025. A consideration of the effects of these null alleles on population of Drosophila melanogaster. The loci to be screened viability strongly suggests that, although they may contribute were selected on the basis of detectability of nulls by starch gel to so-called polygenic variation, they are not representative of electrophoresis. The two criteria for inclusion of a locus were: the entire genome. (i) the enzyme must be present in sufficiently high concentra- The existence of allozyme polymorphisms in natural popula- tion to be reliably scorable in single fly assays after starch gel tions of most species is now well documented (1). -
Crossbreeding Systems for Small Beef Herds
~DMSION OF AGRICULTURE U~l_}J RESEARCH &: EXTENSION Agriculture and Natural Resources University of Arkansas System FSA3055 Crossbreeding Systems for Small Beef Herds Bryan Kutz For most livestock species, Hybrid Vigor Instructor/Youth crossbreeding is an important aspect of production. Intelligent crossbreed- Generating hybrid vigor is one of Extension Specialist - the most important, if not the most ing generates hybrid vigor and breed Animal Science important, reasons for crossbreeding. complementarity, which are very important to production efficiency. Any worthwhile crossbreeding sys- Cattle breeders can obtain hybrid tem should provide adequate levels vigor and complementarity simply by of hybrid vigor. The highest level of crossing appropriate breeds. However, hybrid vigor is obtained from F1s, sustaining acceptable levels of hybrid the first cross of unrelated popula- vigor and breed complementarity in tions. To sustain F1 vigor in a herd, a a manageable way over the long term producer must avoid backcrossing – requires a well-planned crossbreed- not always an easy or a practical thing ing system. Given this, finding a way to do. Most crossbreeding systems do to evaluate different crossbreeding not achieve 100 percent hybrid vigor, systems is important. The following is but they do maintain acceptable levels a list of seven useful criteria for evalu- of hybrid vigor by limiting backcross- ating different crossbreeding systems: ing in a way that is manageable and economical. Table 1 (inside) lists 1. Merit of component breeds expected levels of hybrid vigor or het- erosis for several crossbreeding sys- 2. Hybrid vigor tems. 3. Breed complementarity 4. Consistency of performance Definitions 5. Replacement considerations hybrid vigor – an increase in 6. -
Dominance Hierarchy Arising from the Evolution of a Complex Small RNA Regulatory Network Eléonore Durand, Raphaël Méheust, Marion Soucaze, Pauline M
RESEARCH ◥ between S alleles (6). Selection is expected to RESEARCH ARTICLE favor genetic elements (“dominance modifiers”), which establish dominance-recessivity interac- tion rather than codominance, because individ- PLANT GENETICS uals with a codominant genotype can produce pollen rejected by more potential mates than would occur in a dominant-recessive system (7, 8). Dominance hierarchy arising from On the basis of modeling (8), the large non- recombining region composing the S locus (9–11) is a strong candidate region for hosting such ge- the evolution of a complex small netic elements. Until recently, the dominance modifiers as- RNA regulatory network sumed in models (7, 8) remained hypothetical. A particular small RNA (sRNA) has been identified Eléonore Durand,1,2* Raphaël Méheust,1* Marion Soucaze,1 Pauline M. Goubet,1† (12) within the S locus of dominant alleles in Sophie Gallina,1 Céline Poux,1 Isabelle Fobis-Loisy,2 Eline Guillon,2 Thierry Gaude,2 Brassica (called Smi). This sRNA acts as a trans- Alexis Sarazin,3 Martin Figeac,4 Elisa Prat,5 William Marande,5 Hélène Bergès,5 modifier of the gene controlling pollen specificity Xavier Vekemans,1 Sylvain Billiard,1 Vincent Castric1‡ via de novo methylation of the promoter of re- cessive alleles, which leads to transcriptional si- The prevention of fertilization through self-pollination (or pollination by a close relative) lencing of recessive alleles by dominant alleles in the Brassicaceae plant family is determined by the genotype of the plant at the (13, 14). However, the mechanism in the more self-incompatibility locus (S locus). The many alleles at this locus exhibit a dominance complex dominance-recessivity networks in spe- Downloaded from hierarchy that determines which of the two allelic specificities of a heterozygous genotype cies that have many levels in the dominance is expressed at the phenotypic level. -
Curriculum.Pdf
Teaching Curriculum for the North American International Livestock Exposition (NAILE) by Stephanie Darst The North American International Livestock Exposition is the world’s largest purebred, all-breed livestock show. It is held, annually in November, at the Kentucky Exposition Center in Louisville, Kentucky. This publication was produced by the Kentucky State Fair Board, a state agency in the Commerce Cabinet, and presenter of the North American International Livestock Exposition. Copyright © 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 Kentucky State Fair Board NORTH AMERICAN INTERNATIONAL LIVESTOCK EXPOSITION Dear Educator: The North American International Livestock Exposition (NAILE) would like to thank you for participating in the NAILE Educational Program. Please use this publication, Teaching Curriculum for the North American International Livestock Exposition. The curriculum is just one part of the Educational Program. The other component of the Educational Program is the school tours held during the NAILE, these tours serve thousands of students each November. The Teaching Curriculum for the North American International Livestock Exposition is presently in a flexible and changing format. It is photocopied on loose-leaf pages to facilitate sharing and further photo-reproduction. (Although these materials are copyrighted, we fully intend for them to be duplicated for educational purposes. Please seek permission should you wish to alter or publish any of the enclosed materials.) We ask that all teachers receiving this publication become an important part of our evaluation process. Please return the completed evaluation form to us as soon as possible, so that we may improve this resource. When you share these materials with other teachers, please copy the form for them as well, encouraging them to evaluate what they use. -
A Novel Polymorphism in the Pseudogene TCRBV5S5 Combines with TCRBV6S1 to Define Three Haplotypes
Genes and Immunity (2001) 2, 290–291 2001 Nature Publishing Group All rights reserved 1466-4879/01 $15.00 www.nature.com/gene ALLELE REPORT A novel polymorphism in the pseudogene TCRBV5S5 combines with TCRBV6S1 to define three haplotypes JL Brzezinski1, DN Glass2 and E Choi1 1Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, OH, USA; 2Department of Pediatrics, William S. Rowe Division of Rheumatology, Children’s Hospital Medical Center, Cincinnati, OH, USA In the current study, we report a G to A single nucleotide polymorphism at base pair 396 of the TCRBV5S5P gene. This polymorphism has a frequency of 0.20 in a cohort of Caucasian controls. In addition, we provide evidence for linkage disequilibrium between TCRBV5S5P and the TCRBV6S1 gene. Genes and Immunity (2001) 2, 290–291. Keywords: TCR; polymorphism; haplotype The TCRBV genes encode the variable region of the  A1/A2 heterozygotes 0.24 chain of the T cell receptor (TCR). There are 46 known A2 homozygotes 0.08 functional TCRBV genes, a number of which have been identified as having coding region polymorphisms.1 The It has been previously reported that TCRBV5S5 is a current study reports the presence of a single nucleotide pseudogene based on a mutation of the highly conserved polymorphism in a TCRBV pseudogene, TCRBV5S5P, GT dinucleotide to GA in the 5Ј donor splice site in the and the identification of strong linkage disequilibrium to intron following exon one, corresponding to base pair the closely linked gene, TCRBV6S1. The G to A transition 203960 of GenBank accession number U66059.2 Sequence in the second exon of the TCRBV5S5P gene corresponds analysis of TCRBV5S5A2 from two homozygotes confirm to base pair 204306 of GenBank accession number that this mutation is present in the novel TCRBV5S5P U66059.