AT1G17500 ATPase E1−E2 type family / haloacid dehalogenase−like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral

● ● ● ● ● ● 8 ● ● ● ●● ● ● ● ● ● ● ● ● ● ●● ● ● 7 ●

● 6 ● ● ● ● ● ●

5 ● ● ● ● ● ● ● Log2 RMA Expression ● ● ● ● ● ● ● ● 4 ● ● ● ● ● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Col−0 Cvi MCE Cvi RAD Whole AT1G18650 plasmodesmata callose−binding protein 3 (PDCB3); CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST protein match is: glucan endo−1,3−beta−glucosidase−like protein 3 (TAIR:AT5G08000.1); Has 1473 Blast hits to 1425 in 72 species: Archae − 4; Bacteria − 6; 9 8

● ● ● ● ● ● 7 ● ● ● ● ● ●● ● ● ● ● ● ● ●● ●● 6 ● ●● ● ● ● ● ● ● 5 ●● ● ●

Log2 RMA Expression ● ● ● ● ●● ● ● 4 ● ● ● ● ● ● ● ● ● ●

● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT1G25530 Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 1 (TAIR:AT5G40780.1); Has 3229 Blast hits to 3219 proteins in 255 species: Archae

●

9 ● ● ● ●● ● ● ● ● ● ● ● ● ● ● 8 ● ● ● ● ● 7 ● ●

6 ● ● ● ● ● ● ● ● ● 5 ● ● ● Log2 RMA Expression ● ● ● ●● ● ● ● ●●● ● ● ● ● ● ● 4 ● ● ● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT1G72790 −rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 14 structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is:

8 ● ● ● ●● ● ● ● ● ● ● ● ● ● 7 ● ● ● ● ●● ● ● ● ●

6 ● ● ● ● ● ● ● ● ● ● ● ● ● ● ● 5 ● ● ● ● ● ● Log2 RMA Expression ●

4 ● ● ● ● ● ● ● ● ● ● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT1G79260 CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1794 (InterPro:IPR014878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae − 12; Bacteria − 1396; Metazoa − 17338; Fungi − 3422; − 5037; Viruses − 0; Other − 2996 (source: NCBI BLink). 9 8

● ● ●● ● ● ● ● ●● 7 ● ● ● ● ● ● ●● ● ● ● ● ● ● ● ●

6 ● ● ● ● ● ● ● ● ●● ●● ● 5 ●● Log2 RMA Expression ● ●● ● ● ● ● ● ● ● ● ● ● ● ●●● 4 ● ●

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT3G61640 protein 20 (AGP20); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 16 (TAIR:AT2G46330.1); Has 106 Blast hits to 106 proteins in 13 species: Archae − 0; Bacteria − 0; Metazoa 8

● ● ●● ● ● ● ●● ● ● ● 7 ● ● ● ● ●● ● ●● ● ● ● ● 6

● ● ● ● ● 5 ●● ● ● ● ● ●● ●● ● ●● ● ● ● Log2 RMA Expression ● ● 4 ● ● ●● ● ● ●● ● ● ● ● ● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT4G32460 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant−type ; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946),

12 ● ● ● ● ● ● ● 11 ●● ● ● ● ● ● ● ● ● ● 10 ● ● ● ● 9

● ● ● ● ● 8 ●

7 ● ● ●

Log2 RMA Expression ● ● ● ● ● ● ● ● ● ● ●

6 ● ● ●● ● ●● ● ● ● ● ● 5

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 (CAC1); FUNCTIONS IN: acetyl−CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 10

9 ●● ● ● ● ● ● ● ● ●● ● ● 8 ● ● ● ● ● ● ● ● ● 7 ● ● ●● ●● ● ●● ● ● ● ●● ● 6 ● ●

Log2 RMA Expression ● ● 5 ● ● ● ● ● ● ● ● ● ● ● ● ● ● ●

4 ● ●

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT5G58600 POWDERY MILDEW RESISTANT 5 (PMR5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE−LIKE 45 (TAIR:AT2G30010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae − 0; 8

●

7 ● ● ●● ● ● ● ●● ● ● ● ● ● ● ●

6 ● ●● ● ●

5 ● ● ● ● ● ● ●

Log2 RMA Expression ● ● ● ● ● ● ● ●

4 ● ● ● ● ● ●● ● ● ● ●● ● ● ● ● ● ● ● ● 3

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds AT5G58750 NAD(P)−binding Rossmann−fold superfamily protein; BEST Arabidopsis thaliana protein match is: NAD(P)−binding Rossmann−fold superfamily protein (TAIR:AT4G24220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae − 0; Bacteria − 0; Metazoa − 736; Fungi − 347; Plants − 385; Viruses

8 ● ● ● ● ● ● ● ● ●● ● ● ● ●● ● 7 ● ● ●● ● ● ● ● 6 ● ● ● ● ● ●● 5 ● ● ● ● ● 4 Log2 RMA Expression ●● ●● ●● ● ● ●● ● ● ●● ● ● ● ● ● ●● 3 ● ● ● ● ● ●

1 3 7 12 16 20 25 31 38 1 3 7 12 16 20 25 31 38 3 7 12 24 3 7 12 24 Ler

● MCE PE RAD COT Whole ● D ● AR Cvi Dry NILDOG1 NILDOG2 NILDOG3 NILDOG6 Col−0 Dry Col−0 Endosperm Col−0 Embryo Cvi MCE Cvi RAD Whole Seeds