Contributions to Zoology, 70 (1) 23-39 (2001) SPB Academic Publishing bv, The Hague Hierarchical analysis of mtDNA variation and the use of mtDNA for isopod (Crustacea: Peracarida: Isopoda) systematics R. Wetzer Invertebrate Zoology, Crustacea, Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007, USA,
[email protected] Keywords: 12S rRNA, 16S rRNA, COI, mitochondrial DNA, isopod, Crustacea, molecular Abstract Transition/transversion bias 30 Discussion 32 Nucleotide composition 32 Carefully collected molecular data and rigorous analyses are Transition/transversionbias 34 revolutionizing today’s phylogenetic studies. Althoughmolecular Sequence divergences 34 data have been used to estimate various invertebrate phylogenies Rate variation across 34 lor lineages more than a decade,this is the first ofdifferent study survey Conclusions 35 of regions mitochondrial DNA in isopod crustaceans assessing Acknowledgements 36 sequence divergence and hence the usefulness ofthese regions References 36 to infer phylogeny at different hierarchical levels. 1 evaluate three loci fromthe mitochondrial ribosomal RNAs genome (two (12S, 16S) and oneprotein-coding (COI)) for their appropriateness in inferring isopod phylogeny at the suborder level and below. Introduction The patterns are similar for all three loci with the most speciose suborders ofisopods also having the most divergent mitochondrial The crustacean order Isopoda is important and nucleotide sequences. Recommendations for designing an or- because it has a broad dis- der- or interesting geographic suborder-level molecular study in previously unstudied groups of Crustacea tribution and is diverse. There would include: (1) collecting a minimum morphologically are of two-four species or genera thoughtto be most divergent, (2) more than 10,000 described marine, freshwater, sampling the across of interest as equally as possible in group and terrestrial species, ranging in length from 0.5 terms of taxonomic representation and the distributionofspecies, mm to 440 mm.