Supplementary Figures Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments Ning Wang, Email:
[email protected] Stephen A. Smith, E-mail:
[email protected] Dendroscope view Limeaceae_Limeum aethiopicum Montiaceae_Phemeranthus parviflorus Basellaceae_Anredera cordifolia Anacampserotaceae_Anacampseros kurtzii Portulacaceae_Portulaca amilis Cactaceae_Leuenbergeria lychnidiflora Cactaceae_Stenocereus yunckeri Cactaceae_Maihuenia poeppigii Cactaceae_Opuntia bravoana Cactaceae_Pereskia grandifolia Talinaceae_Talinum paniculatum A Didiereaceae_Portulacaria afra PhyloPlot view Limeaceae_Limeum aethiopicum Montiaceae_Phemeranthus parviflorus Basellaceae_Anredera cordifolia Anacampserotaceae_Anacampseros kurtzii 0.008 Portulacaceae_Portulaca amilis 0.992 0.118 Cactaceae_Leuenbergeria lychnidiflora Cactaceae_Stenocereus yunckeri 0.24 0.146 0.76 Cactaceae_Maihuenia poeppigii 0.854 0.882 0.364 Cactaceae_Opuntia bravoana 0.636 Cactaceae_Pereskia grandifolia B Talinaceae_Talinum paniculatum Didiereaceae_Portulacaria afra FIG. S1. The phylogenetic network inferred using MPL method in PhyloNet. Taxa were selected from each plant family based on their gene occupancy statistics. A: network visualized in Dendroscope, and B: the same network with inheritance probabilities between hybridization lineages visualized by PhyloPlot that implemented in PhyloNetworks (Solís-Lemus et al. 2017). Anacampserotaceae Basellaceae Anacampseros A. kurtzii Talinopsis frutescens Anredera cordifolia Basella alba filamentosa Bese 400 4000 4000 3000 3000 200 2000 2000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Portulacaceae Portulaca amilis P. cryptopetala P. grandiflora P. molokiniensis P. oleracea P. pilosa 300 500 800 800 200 200 300 150 400 400 100 100 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Talinaceae P.