Outstanding Challenges in the Transferability of Ecological Models

Total Page:16

File Type:pdf, Size:1020Kb

Outstanding Challenges in the Transferability of Ecological Models UC Davis UC Davis Previously Published Works Title Outstanding Challenges in the Transferability of Ecological Models. Permalink https://escholarship.org/uc/item/4r97d4np Journal Trends in ecology & evolution, 33(10) ISSN 0169-5347 Authors Yates, Katherine L Bouchet, Phil J Caley, M Julian et al. Publication Date 2018-10-01 DOI 10.1016/j.tree.2018.08.001 Peer reviewed eScholarship.org Powered by the California Digital Library University of California TREE 2418 1–13 Review Outstanding Challenges in the Transferability of Ecological Models 1,2, ,y 3,y 4,5 4,5 Katherine L. Yates , * Phil J. Bouchet, M. Julian Caley, Kerrie Mengersen, 6 1 7 8 9 Christophe F. Randin, Stephen Parnell, Alan H. Fielding, Andrew J. Bamford, Stephen Ban, 10 11 12 13 14 A. Márcia Barbosa, Carsten F. Dormann, Jane Elith, Clare B. Embling, Gary N. Ervin, 15 16 17 18,19 20 Rebecca Fisher, Susan Gould, Roland F. Graf, Edward J. Gregr, Patrick N. Halpin, 21 22 23 24 Risto K. Heikkinen, Stefan Heinänen, Alice R. Jones, Periyadan K. Krishnakumar, 25 26 20,27 28,23 Valentina Lauria, Hector Lozano-Montes, Laura Mannocci, Camille Mellin, 29 30 31 32 Mohsen B. Mesgaran, Elena Moreno-Amat, Sophie Mormede, Emilie Novaczek, 33 20 34 35 Steffen Oppel, Guillermo Ortuño Crespo, A. Townsend Peterson, Giovanni Rapacciuolo, 20 13 36 36,37 38 Jason J. Roberts, Rebecca E. Ross, Kylie L. Scales, David Schoeman, Paul Snelgrove, 39 40 41 12 42,43 Göran Sundblad, Wilfried Thuiller, Leigh G. Torres, Heroen Verbruggen, Lifei Wang, 44 45 46 47,48 Seth Wenger, Mark J. Whittingham, Yuri Zharikov, Damaris Zurell, and 3,49 Ana M.M. Sequeira Predictive models are central to many scientific disciplines and vital for informing Highlights management in a rapidly changing world. However, limited understanding of the Models transferred to novel conditions could provide predictions in data-poor accuracy and precision of models transferred to novel conditions (their ‘trans- scenarios, contributing to more ’ fi fi ferability ) undermines con dence in their predictions. Here, 50 experts identi ed informed management decisions. priority knowledge gaps which, if filled, will most improve model transfers. These The determinants of ecological pre- are summarized into sixtechnical and six fundamental challenges, which underlie dictability are, however, still insuffi- the combined need to intensify research on the determinants of ecological ciently understood. predictability, including species traits and data quality, and develop best prac- Predictions from transferred ecological tices for transferring models. Of high importance is the identification of a widely models are affected by species’ traits, applicable set of transferability metrics, with appropriate tools to quantify the sampling biases, biotic interactions, nonstationarity, and the degree of sources and impacts of prediction uncertainty under novel conditions. environmental dissimilarity between reference and target systems. Predicting the Unknown We synthesize six technical and six Predictions facilitate the formulation of quantitative, testable hypotheses that can be refined and fundamental challenges that, if validated empirically [1]. Predictive models have thus become ubiquitous in numerous scientific resolved, will catalyze practical and disciplines, including ecology [2], where they provide means for mapping species distributions, conceptual advances in model explaining population trends, or quantifying the risks of biological invasions and disease outbreaks transfers. (e.g., [3,4]). The practical value of predictive models in supporting policy and decision making has We propose that the most immediate therefore grown rapidly (Box 1) [5]. With that has come an increasing desire to predict (see obstacle to improving understanding Glossary) the state of ecological features (e.g., species, habitats) and our likely impacts upon them lies in the absence of a widely applic- [5], prompting a shift from explanatory models to anticipatory predictions [2]. However, in able set of metrics for assessing trans- ferability, and that encouraging the many situations, severe data deficiencies preclude the development of specific models, and the development of models grounded in collection of new data can be prohibitively costly or simply impossible [6]. It is in this context that well-established mechanisms offers interest in transferable models (i.e., those that can be legitimately projected beyondthe spatial and the most immediate way of improving temporal bounds of their underlying data [7]) has grown. transferability. Transferred models must balance the tradeoff between estimation and prediction bias and variance (homogenization versus nontransferability, sensu [8]). Ultimately, models that can Trends in Ecology & Evolution, Month Year, Vol. xx, No. yy https://doi.org/10.1016/j.tree.2018.08.001 1 © 2018 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). TREE 2418 1–13 1 Box 1. Why Transfer Models in the First Place? School of Environment and Life Sciences, University of Salford, Ecological models are extensively and increasingly used in support of environmental policy and decision making [77]. Manchester, UK The process of transferring models typically stems from the need to support resource management in the face of 2 Centre for Excellence in pervasive data deficiencies, limited research funding, and accelerating global change [5]. Spatial transfers have been Environmental Decisions, University of used to guide the design of protected areas, search for species on the brink of extinction, inform species relocations or Queensland, Brisbane, QLD, Australia reintroductions, outline hotspots of invasive pests, design field sampling campaigns, and assist the regulation of human 3 School of Biological Sciences, activities (e.g., [78,79]). For instance, cetacean density models developed off the east coast of the United States were University of Western Australia, 35 recently extrapolated throughout the western North Atlantic high seas to assist the management of potentially harmful Stirling Highway, Crawley, WA 6009, sonar exercises performed by the military [80]. Similarly, projections of Asian tiger mosquito (Aedes albopictus) Australia 4 distribution models onto all continents helped identify areas at greatest risk of invasion, with important implications ARC Centre for Excellence in ’ for human health [81]. Temporal transfers have largely been applied to forecast species responses to climate warming, Mathematical and Statistical Frontiers, retrospectively describe pristine population states, characterize evolutionary patterns of speciation, quantify the Queensland University of Technology, fi repercussions of land use changes, or estimate future ecosystem dynamics (e.g., [68,72,82]). Despite being dif cult Brisbane, QLD, Australia 5 to quantify, the societal and economic gains from transferring models can be substantial, and are most readily illustrated School of Mathematical Sciences, by the mitigation of costs associated with invasive species [83]. For instance, the establishment of the zebra mussel Queensland University of Technology, (Dreissena polymorpha) in the Great Lakes region of North America has led to $20–100 million in annual mitigation Brisbane, QLD, Australia 6 expenditure, with additional, unquantified nonmarket costs ensuing from the loss of biodiversity and ecosystem services Department of Ecology and Evolution, University of Lausanne, [5]. Transferred models accurately predicted the establishment of the zebra mussel 5 years before it was actually Lausanne, Switzerland discovered in the region, however model predictions were not used to take preventative action, illustrating that 7 Haworth Conservation Ltd, developing a transferable model is only the start of the road to informing decision makers (see Outstanding Questions). Bunessan, Isle of Mull, Scotland Ultimately, the widespread need to make proactive management decisions in data-poor situations drives the need to 8 Wildfowl & Wetlands Trust, improve our understanding of model transferability. This goal fundamentally requires better transferability metrics and Slimbridge, Gloucestershire, GL2 7BT, estimates of prediction uncertainty, which can assist in selecting the most consistent and effective management options UK while avoiding unanticipated outcomes [84]. 9 Canadian Parks and Wilderness Society, #410-698 Seymour Street, Vancouver, BC V6B 3K6, Canada simultaneously achieve high accuracy and precision, even when predicting into novel contexts, 10 CIBIO/InBIO-Centro de Investigação will provide maximum utility for decision making [9]. To date, however, tests of transferability em Biodiversidade e Recursos across taxa and geographic locations have failed to demonstrate consistent patterns (Figure 1), Genéticos, Universidade de Évora, 7004-516 Évora, Portugal and a general approach to developing transferable models remains elusive (but see [6,10]). 11 Biometry & Environmental System Here, we outline challenges that, if addressed, will improve the harmonization, uptake, and Analysis, University of Freiburg, application of model transfers in ecology. We argue that moving the field of model of transfer- Tennenbacher Str. 4, 79106 Freiburg, Germany ability forward requires a two-pronged approach focused on: (i) investing in fundamental 12 School of BioSciences, University of research aimed at enhancing predictability, and (ii) establishing technical standards for assess- Melbourne, VIC
Recommended publications
  • David Schindler, 5 William H. Schlesinger, 6 Daniel Simberloff, 7
    R EPORTS Forecasting Agriculturally Driven Global Environmental Change David Tilman,1* Joseph Fargione,1 Brian Wolff,1 Carla D’Antonio,2 Andrew Dobson,3 Robert Howarth,4 David Schindler,5 William H. Schlesinger,6 Daniel Simberloff,7 Deborah Swackhamer8 During the next 50 years, which is likely to be the final period of rapid agri- cultural expansion, demand for food by a wealthier and 50% larger global population will be a major driver of global environmental change. Should past dependences of the global environmental impacts of agriculture on human population and consumption continue, 109 hectares of natural ecosystems would be converted to agriculture by 2050. This would be accompanied by 2.4- to 2.7-fold increases in nitrogen- and phosphorus-driven eutrophication of terrestrial, freshwater, and near-shore marine ecosystems, and comparable increases in pesticide use. This eutrophication and habitat destruction would cause unprecedented ecosystem simplification, loss of ecosystem services, and species extinctions. Significant scientific advances and regulatory, technolog- ical, and policy changes are needed to control the environmental impacts of agricultural expansion. During the first 35 years of the Green Revolu- ecosystems by the use and release of limiting tion, global grain production doubled, greatly resources that influence ecosystem functioning reducing food shortages, but at high environ- (nitrogen, phosphorus, and water), release of mental cost (1–5). In addition to its effects on pesticides, and conversion of natural ecosys- greenhouse gases (1, 6, 7), agriculture affects tems to agriculture. These sources of global change may rival climate change in environ- 1Department of Ecology, Evolution and Behavior, Uni- mental and societal impacts (2, 8).
    [Show full text]
  • Profile of Stephen R. Carpenter
    PROFILE Profile of Stephen R. Carpenter hether you are a fisher- man, a kayaker, or just a lover of the outdoors, the sight—and smell—of a Wscummy, algae-covered lake may not be particularly appealing. For Stephen R. Carpenter, who is all of the above as well as a renowned lake ecologist, the problems associated with this algae buildup, or eutrophication, go far deeper than simple aesthetics. ‘‘Eu- trophication is a significant environmen- tal problem that can impact humans on a recreational, economic, and even pub- lic health level,’’ says Carpenter, ‘‘and it’s likely to intensify in the coming decades due to increases in human pop- ulation, demand for more food, land conversion, and fertilizer use.’’ Carpenter, the S. A. Forbes Professor of Zoology and Halverson Professor of Limnology at the University of Wiscon- sin–Madison (Madison, WI), has studied freshwater ecology for over 30 years. Stephen R. Carpenter and algae on Lake Mendota, WI. His multitude of research interests in- clude eutrophication, aquatic food webs, nutrient cycling, and ecological econom- outdoors at an early age. Carpenter was an aquatic systems ecologist, and ics. Beyond his research and teaching, spent most of his youth in Bethesda, that field really captured my imagination.’’ Carpenter also has, among other activi- MD. ‘‘It was a much smaller place back Carpenter performed undergraduate ties, served on numerous National Sci- then,’’ he says. ‘‘Bethesda was at the research for Fisher, who specialized in ence Foundation (NSF) advisory panels, urban fringe of DC. Everything beyond stream ecology, and Carpenter pub- been President of the Ecological Society that was rural.’’ His father, Richard, was lished his first paper on the primary of America (2001–2002), and served as a chemist, so there was always a lot of production of macrophytes (rooted the Chair of the Beijer Institute of Eco- science discussion in the household.
    [Show full text]
  • Model-Free Forecasting Outperforms the Correct Mechanistic Model for Simulated and Experimental Data
    Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data Charles T. Perrettia,1, Stephan B. Munchb, and George Sugiharaa aScripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093; and bFisheries Ecology Division, Southwest Fisheries Science Center, Santa Cruz, CA 95060 Edited by Peter J. Bickel, University of California, Berkeley, CA, and approved January 10, 2013 (received for review September 14, 2012) Accurate predictions of species abundance remain one of the most ARMA time series models have been used extensively in ecology; vexing challenges in ecology. This observation is perhaps unsurpris- recent examples include forecasting quasi-extinction risk (10), ing, because population dynamics are often strongly forced and investigating the effects of climate change on fisheries (11), and highly nonlinear. Recently, however, numerous statistical techni- detecting critical thresholds in ecosystem dynamics (12). SSR ques have been proposed for fitting highly parameterized mecha- methods have been less pervasive in ecology (13, 14), although nistic models to complex time series, potentially providing the they are ubiquitous in many other scientific disciplines for de- machinery necessary for generating useful predictions. Alterna- scribing stochastic nonlinear systems (15). tively, there is a wide variety of comparatively simple model-free Here, we pose a rather conservative challenge and ask whether forecasting methods that could be used to predict abundance. Here a correctly specified mechanistic model, fit with commonly used we pose a rather conservative challenge and ask whether a correctly statistical techniques, can provide better forecasts than simple specified mechanistic model, fit with commonly used statistical tech- niques, can provide better forecasts than simple model-free meth- model-free methods for ecological systems with noisy nonlinear ods for ecological systems with noisy nonlinear dynamics.
    [Show full text]
  • Noaa's Ecological Forecasting
    NOAA’S ECOLOGICAL FORECASTING Ecological forecasts use measurements of the physical and biological environment to predict ecological conditions that can impact natural resources, people, communities, and economies. NOAA aims to deliver accurate, relevant, timely, and reliable ecological forecasts that power the blue economy and build climate resilience. These products and services are made available to coastal resource managers, private industry, and the public. Harmful algal blooms (HABs) Forecasts Hypoxia Forecasts HABs occur in every state and are changing in Hypoxia (low oxygen) has dramatically increased in U.S. frequency, toxicity, and duration. Both toxic and non- coastal systems, with large “dead zones” in Lake Erie, toxic HABs threaten human and marine mammal Chesapeake Bay, and Gulf of Mexico occurring annually. health, drinking water, tourism, commercial and The consequences of such large dead zones include recreational fisheries, and aquaculture. Short-term massive fish kills, loss of fisheries habitat, and economic HAB forecasts predict the intensity, location, and losses in commercially and recreationally valuable fishies. trajectory of blooms, and respiratory health risks of In Lake Erie, hypoxic water reaching the water intake for HABs in some areas. Longer-term forecasts predict cities along the coast can affect water treatment, the severity of HABs for the bloom season in a potentially impacting approximately 2 million residents. particular region. Scenario forecasts are used to test NOAA hypoxia forecasts aim to provide coastal managers the impact of changing environmental conditions, and stakeholders with the information needed to take such as nutrient pollution and climate change, on HAB proactive action to mitigate the impacts of an ongoing occurrence over multi-year time scales.
    [Show full text]
  • Applying Algorithmic Accountability Frameworks with Domain-Specific Codes of Ethics: a Case Study in Ecosystem Forecasting for Shellfish Toxicity in the Gulf of Maine
    Applying Algorithmic Accountability Frameworks with Domain-specific Codes of Ethics: A Case Study in Ecosystem Forecasting for Shellfish Toxicity in the Gulf of Maine Isabella Grasso David Russell Abigail Matthews [email protected] [email protected] [email protected] Clarkson University Clarkson University University of Wisconsin-Madison Potsdam, New York Potsdam, New York Madison, Wisconsin Jeanna Matthews Nicholas R. Record [email protected] [email protected] Clarkson University Bigelow Laboratory for Ocean Potsdam, New York Sciences East Boothbay, Maine ABSTRACT CCS CONCEPTS Ecological forecasts are used to inform decisions that can have · Social and professional topics → Codes of ethics; · Applied significant impacts on the lives of individuals and on the health computing → Environmental sciences; · Human-centered com- of ecosystems. These forecasts, or models, embody the ethics of puting → Walkthrough evaluations; their creators as well as many seemingly arbitrary implementation choices made along the way. They can contain implementation KEYWORDS errors as well as reflect patterns of bias learned when ingesting Algorithmic accountability, ethics, ecology, forecasting datasets derived from past biased decision making. Principles and frameworks for algorithmic accountability allow a wide range of ACM Reference Format: stakeholders to place the results of models and software systems Isabella Grasso, David Russell, Abigail Matthews, Jeanna Matthews, and Nicholas into context. We demonstrate how the combination of algorithmic R. Record. 2020. Applying Algorithmic Accountability Frameworks with accountability frameworks and domain-specific codes of ethics help Domain-specific Codes of Ethics: A Case Study in Ecosystem Forecast- answer calls to uphold fairness and human values, specifically in ing for Shellfish Toxicity in the Gulf of Maine.
    [Show full text]
  • July 21, 2020 Theory Working Group Call
    July 21, 2020 Theory Working Group Call Attendees: Amanda Gallinat, Jody Peters, Anna Sjodin, Christy Rollinson, Mike Dietze, Kathryn Wheeler, Glenda Wardle, John Foster, Michael Stemkovski, Abby Lewis Agenda: 1. Peter Adler needs to step down as the Theory Working Group chair. He will continue to provide input and follow discussions, when possible, but does not have the time to join the calls. Does anyone else want to lead/co-lead the group? a. Glenda, Christy, Abby, Amanda are all potential options b. Jody and Mike to follow up with all 4 about options 2. Update from Anna and Gretchen about their forecasting, prediction, and projection vocab analyses. n=106 respondents to the survey a. Figures b. Conceptual Diagram c. Given the survey data/figures, Anna and Gretchen came up with two ideas for forecast definitions, based on interpretation of the survey data. Anna/Gretchen are happy to have them edited, or a new definition created, by the Theory group. i. A forecast is an estimate, and the associated uncertainty of that estimate, about the future state of a system. ii. A forecast is an estimate about the state of a system in the future, or in a different space, and the uncertainty associated with that estimate. d. What is not considered in these definitions or is there something that didn’t come up in the surveys that would be helpful to ecological forecasting. e. Novel conditions may be a way to combine forecasting to future time/space. Is “novel conditions” too vague? No analog could be another option. Out of sample prediction.
    [Show full text]
  • Ecological Forecasting Initiative 2019 Conference Speaker & Poster
    Ecological Forecasting Initiative 2019 Conference Speaker & Poster Abstracts May 13-15, 2019 AAAS Headquarters 1200 New York Ave, NW Washington, DC 20005 @eco4cast #efi2019 The Ecological Forecasting Initiative (EFI) is a broad, interdisciplinary effort aimed at promoting the use of forecasts to understand, manage, and conserve ecosystems and the services they provide. The EFI 2019 meeting is aimed at bringing together scientists, agencies, industry, and stakeholders to build a community of practice and advance research, applications, and collaboration around near-term (subdaily to decadal) ecological forecasts. EFI2019 is sponsored by the Alfred P. Sloan Foundation, the Frederick S. Pardee Center for the Study of the Longer-Range Future at Boston University, and the National Science Foundation’s Office of International Science and Engineering. @ecoforecast #efi2019 Speaker Abstracts Session 1: Theory and Synthesis Monday, May 13 9:00 am S1.1: Keynote Ecological forecasting: the role of observations in models David Schimel1 [email protected] 1NASA JPL [abstract] 2 @ecoforecast #efi2019 Session 1: Theory and Synthesis Monday, May 13 9:00 am S1.2: Lightning Talk Understanding the uncertainties in estimating post-fire recovery of biomass using the Ecosystem Demography (EDv2.2) model Karun Pandit1, Hamid Dashti1, Nancy F. Glenn1, Alejandro N. Flores1, Kaitlin C. Maguire2, Douglas J. Shinneman2, Gerald N. Flerchinger3, Aaron W. Fellows3 [email protected] 1Boise State University; 2U.S. Geological Survey; 3ARS Frequent wildfires in the sagebrush-steppe ecosystems in the Western United States lead to heavy biodiversity loss, and changes in vegetation composition. It is debated in literature whether fires are beneficial or not for maintaining sagebrush ecosystems, it is essential that we understand the impact of these fires in terms of recovery time and potential changes in vegetation composition.
    [Show full text]
  • The Ecological Forecast Horizon, and Examples of Its Uses and Determinants
    bioRxiv preprint doi: https://doi.org/10.1101/013441; this version posted March 29, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The Ecological Forecast Horizon, and examples of its uses and determinants 1,2 2 Petchey, Owen L. [email protected] Pontarp, Mikael1,10 [email protected] 1 4 Massie, Thomas M. [email protected] Kéfi, Sonia3 [email protected] 1 6 Ozgul, Arpat [email protected] Weilenmann, Maja1 [email protected] 1 8 Palamara, Gian Marco [email protected] Altermatt, Florian1,2 [email protected] 4 10 Matthews, Blake [email protected] Levine, Jonathan M.5 [email protected] 6 12 Childs, Dylan Z. [email protected] McGill, Brian J.7 [email protected] 8 14 Schaepman, Michael E. [email protected] Schmid, Bernhard1 [email protected] 2,5 16 Spaak, Piet [email protected] Beckerman, Andrew P.6 [email protected] 1 18 Pennekamp, Frank [email protected] Pearse, Ian S.9 [email protected] 20 1 University of Zurich, Institute of Evolutionary Biology and Environmental Studies, Zurich, 22 Switzerland 2 Eawag: Swiss Federal Institute of Aquatic Science and Technology, Department of Aquatic 24 Ecology, Dübendorf, Switzerland 3 Institut des Sciences de l’Evolution, Université de Montpellier, CNRS, IRD, EPHE, CC065,
    [Show full text]
  • Ecosystem Science Capabilities Required to Support NOAA's
    Ecosystem Science Capabilities Required to Support NOAA’s Mission in the Year 2020 S. A. Murawski and G. C. Matlock (editors) U.S. Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service – National Ocean Service NOAA Technical Memorandum NMFS-F/SPO-74 July 2006 Ecosystem Science Capabilities Required to Support NOAA’s Mission in the Year 2020 S. A. Murawski and G. C. Matlock (editors) NOAA Technical Memorandum NMFS-F/SPO-74 July 2006 U.S. Department of Commerce Carlos M. Gutierrez, Secretary National Oceanic and Atmospheric Administration Vice Admiral Conrad C. Lautenbacher, Jr., USN (Ret.) Under Secretary for Oceans and Atmosphere National Marine Fisheries Service Dr. William T. Hogarth, Assistant Administrator for Fisheries National Ocean Service John H. Dunnigan – Assistant Administrator for Ocean Service Suggested Citations: Murawski, S.A., and G.C. Matlock (editors). 2006. Ecosystem Science Capabilities Required to Support NOAA’s Mission in the Year 2020. U.S. Dep. Commerce, NOAA Tech. Memo. NMFS-F/SPO-74, 97 p. Individual sections: Carter, G., P. Restrepo, J. Hameedi, P. Ortner, C. Sellinger, J. Stein, and T. Beechie, 2006. Freshwater Issues. pp. 29-39. In: S.A. Murawski and G.C. Matlock (editors). Ecosystem Science Capabilities Required to Support NOAA’s Mission in the Year 2020. U.S. Dep. Commerce, NOAA Tech. Memo. NMFS-F/SPO-74, 97 p. A copy of the report may be obtained from: National Marine Fisheries Service Office of Science and Technology 1315 East-West Highway, 12th Floor Silver Spring, Maryland 20910 or National Ocean Service National Centers for Coastal Ocean Science 1305 East West Highway, Room 8110 Silver Spring, Maryland 20910 Or Online at: http://spo.nmfs.noaa.gov/tm/ Overview: Commission on Ocean Policy’s report Ecosystem Science Capabilities (USCOP, 2004), and the Required to Support NOAA’s Administration’s response to that report in the U.S.
    [Show full text]
  • Overfishing Or Environmental Change: Establishing the Frequency of Changes
    Overfishing or environmental change: Establishing the frequency of changes in productivity of marine fish stocks Katyana A. Vert-pre A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science University of Washington 2013 Committee: Ray Hilborn Andre E. Punt Timothy E. Essington Program Authorized to Offer Degree: School of Aquatic and Fishery Sciences © _Copyright 2013 Katyana A. Vert-pre University of Washington Abstract Overfishing or environmental change: Establishing the frequency of changes in productivity of marine fish stocks Katyana A. Vert-pre Chair of the Supervisory Committee: Professor Ray Hilborn Professor School of Aquatic and Fishery Sciences The relative importance of environmental conditions and stock abundance in determining the productivity of fish stocks has been a subject of an on-going debate. The controversy can be formulated as four competing hypotheses: 1) productivity is driven by fishing pressure, which affects abundance, subsequent recruitment; 2) productivity is regime- driven, with periods of good and bad productivity unrelated to abundance; 3) productivity is random from year to year and unrelated to abundance and is temporally uncorrelated; and 4) both stock abundance and regimes of good and bad conditions interact to affect productivity. The goals of this study are (1) to evaluate the support for each of these hypotheses by examining the productivity of marine species using a large number of stocks, and (2) to evaluate the same hypotheses with respect to recruitment. This project uses historic data from about 230 assessments from the RAM Legacy Database. Each of the four hypotheses will be formulated as alternative models, and the support for the hypotheses evaluated using model selection via AICc and AICc weights.
    [Show full text]
  • Ecological Forecasts to Inform Near-Term Management of Threats to Biodiversity
    Received: 29 March 2020 | Accepted: 1 June 2020 DOI: 10.1111/gcb.15272 PRIMARY RESEARCH ARTICLE Ecological forecasts to inform near-term management of threats to biodiversity Ayesha I. T. Tulloch1 | Valerie Hagger2 | Aaron C. Greenville1 1School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Abstract Australia Ecosystems are being altered by rapid and interacting changes in natural processes and 2 School of Biological Sciences, The anthropogenic threats to biodiversity. Uncertainty in historical, current and future ef- University of Queensland, St. Lucia, Qld, Australia fectiveness of actions hampers decisions about how to mitigate changes to prevent bio- diversity loss and species extinctions. Research in resource management, agriculture and Correspondence Ayesha I. T. Tulloch, Desert Ecology health indicates that forecasts predicting the effects of near-term or seasonal environ- Research Group, Heydon-Laurence Building mental conditions on management greatly improve outcomes. Such forecasts help re- A08, School of Life and Environmental Sciences, University of Sydney, Sydney, solve uncertainties about when and how to operationalize management. We reviewed NSW 2006, Australia. the scientific literature on environmental management to investigate whether near-term Email: [email protected] forecasts are developed to inform biodiversity decisions in Australia, a nation with one of Funding information the highest recent extinction rates across the globe. We found that forecasts focused on Australian Research Council, Grant/Award Number: DE170100599; Ecological Society economic objectives (e.g. fisheries management) predict on significantly shorter timelines of Australia; Commonwealth Scientific and and answer a broader range of management questions than forecasts focused on biodi- Industrial Research Organisation versity conservation.
    [Show full text]
  • Bayesian Forecasting Using Models of Ecological Diffusion
    Ecology Letters, (2017) doi: 10.1111/ele.12763 LETTER When mechanism matters: Bayesian forecasting using models of ecological diffusion Abstract Trevor J. Hefley,1* Mevin B. Ecological diffusion is a theory that can be used to understand and forecast spatio-temporal pro- Hooten,2 Robin E. Russell,3 cesses such as dispersal, invasion, and the spread of disease. Hierarchical Bayesian modelling pro- Daniel P. Walsh3 and vides a framework to make statistical inference and probabilistic forecasts, using mechanistic James A. Powell4 ecological models. To illustrate, we show how hierarchical Bayesian models of ecological diffusion can be implemented for large data sets that are distributed densely across space and time. The hierarchical Bayesian approach is used to understand and forecast the growth and geographic spread in the prevalence of chronic wasting disease in white-tailed deer (Odocoileus virginianus). We compare statistical inference and forecasts from our hierarchical Bayesian model to phe- nomenological regression-based methods that are commonly used to analyse spatial occurrence data. The mechanistic statistical model based on ecological diffusion led to important ecological insights, obviated a commonly ignored type of collinearity, and was the most accurate method for forecasting. Keywords Agent-based model, Bayesian analysis, boosted regression trees, dispersal, generalised additive model, invasion, partial differential equation, prediction, spatial confounding. Ecology Letters (2017) (Gneiting & Katzfuss 2014; Raftery 2016). Hierarchical mod- INTRODUCTION elling is a framework to specify uncertainties associated with Mathematical models that are specified as differential equa- ecological systems (Cressie et al. 2009) and Bayesian inference tions play an essential role in describing and understanding provides a coherent means for making probabilistic forecasts ecological processes.
    [Show full text]