Canadian Journal of Fisheries and Aquatic Sciences

Effects of natal water concentration and temperature on the behaviour of up-river migrating sockeye salmon

Journal: Canadian Journal of Fisheries and Aquatic Sciences

Manuscript ID cjfas-2017-0490.R1

Manuscript Type: Article

Date Submitted by the Author: 22-Feb-2018

Complete List of Authors: Middleton, Collin; University of British Columbia, Department of Forest and Conservation Sciences Hinch, Scott; University of British Columbia, Department of Forest and ConservationDraft Sciences Martins, Eduardo; University of Northern British Columbia, Ecosystem Science and Management Program Braun, Douglas; Department of Fisheries and Oceans Patterson, David; Department of Fisheries and Oceans Burnett, Nicholas; University of British Columbia, Department of Forest and Conservation Sciences; Instream Fisheries Research Minke-Martin, Vanessa; University of British Columbia, Department of Forest and Conservation Sciences Casselman, Matthew; BC Hydro Burnaby Office

Is the invited manuscript for consideration in a Special Oceans Tracking Network Issue? :

Homing, Behaviour, Migration Delay, TELEMETRY < General, OLFACTION < Keyword: General

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1 Effects of natal water concentration and temperature on the behaviour of up-river

2 migrating sockeye salmon

3 Collin T Middelton1*, Scott G Hinch1, Eduardo G Martins2, Douglas C Braun3, David A

4 Patterson3, Nicholas J Burnett4, Vanessa MinkeMartin1, Matthew T Casselman5

5 1Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main

6 Mall, Vancouver, BC, Canada. [email protected] & [email protected]

7 2Ecosystem Science and Management Program, University of Northern British Columbia, 3333

8 University Way, Prince George, BC, V2N 4Z9, Canada. [email protected]

9 3Fisheries and Oceans Canada and School of Resource and Environmental Management, Simon

10 Fraser University, 643A Science Road,Draft Burnaby, British Columbia, V5A 1S6, Canada.

11 david.patterson@dfompo.gc.ca & douglas.braun@dfompo.gc.ca

12 4InStream Fisheries Research Inc., 215 – 2323 Boundary Road, Vancouver, British Columbia,

13 V5M 4V8, Canada. [email protected]

14 5BC Hydro, 6911 Southpoint Drive, 11th Floor, Burnaby, British Columbia, V3N 4X8, Canada.

15 [email protected]

16 *correspondence author: Collin Middleton, 2424 Main Mall, Vancouver, BC, V6T 1Z4, 778

17 9287094, [email protected]

18

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19 Abstract 20 Impoundments and diversions in freshwater corridors can alter the availability and

21 concentration of natal water cues that migratory salmon rely on to guide homing during

22 spawning migrations, although this has rarely been examined. By combining radiotelemetry and

23 noninvasive biopsy, we provide the first detailed account of the effects of varying natal water

24 concentrations, temperature, and individual physiology on the homing behaviour of wild adult

25 Pacific salmon migrating through a regulated river. Most (89%) of the 346 sockeye salmon from

26 the two distinct populations tracked in this study in southwestern British Columbia (Canada)

27 delayed their migration in the outlet of a powerhouse that discharges strong concentrations of

28 natal lake water, and subsequently wandered in the Fraser River before continuing upstream into 29 the , where natal water cuesDraft can also vary. There were few associations between 30 metabolic stress indices and reproductive hormone levels with this behaviour in either

31 population, however, higher temperatures and elevated natal water concentrations in the Seton

32 River were associated with shorter powerhouse delays and less wandering in laterun migrants.

33

34 Keywords:

35 Olfaction; homing; migration delay; behaviour; Oncorhynchus nerka; telemetry 36

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37 Introduction 38 Anadromous fishes exhibit some of the most complex behaviours of any group of

39 organisms (Dingle and Drake 2007), in large part because of the variable abiotic conditions

40 encountered throughout their migrations and the inherent physiological changes associated with

41 reproductive development (Alerstam et al. 2003; Donaldson et al. 2011). In the case of Pacific

42 salmon (Oncorhynchus spp.), upriver migrating adults use olfactory cues to locate natal areas

43 (Keefer and Caudill 2014) and do so while maturing and coping with environmental factors (e.g.

44 high discharge and/or high temperature) that can lead to physiological stress, increased energy

45 use (reviewed in Hinch et al. 2006), and slowed or delayed migration (e.g. Bugert et al. 1997;

46 Keefer et al. 2008a). Because adults cease feeding prior to entering freshwater, individuals must 47 complete migration, gonad development,Draft and spawn using finite energy reserves (Brett 1971). 48 Thus, any environmental factors that may delay migrations could influence migration or

49 spawning success (Burnett et al. 2016).

50 Many freshwater corridors used by migratory salmon have been altered by

51 impoundments or diversions (see reviews in Waples et al. 2008; Thorstad et al. 2008). While

52 numerous studies have examined how changes in the amount of flow can affect migratory

53 salmon (e.g. Quinn et al. 1997; Keefer et al. 2004b; Murchie et al. 2008), there have been few

54 direct investigations of how changes in the specific natal water composition of flows affect

55 migrations. For example, multiple impoundments of the Columbia River, U.S.A. have increased

56 river channel crosssections and led to substantial odour diffusion from natal tributaries (Quinn

57 2005; Keefer and Caudill 2014). Many adult salmon now exhibit wandering behaviour in this

58 system which could be reflective of orientation challenges and active searching for natal water

59 cues, though this is largely speculation (Keefer et al. 2008a). Adult salmon are known to be

60 attracted to and delay their migrations in power station outlets which discharge natal water along

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61 migration routes (Andrew and Geen 1958; Thorstad et al. 2003b, 2008). Numerous forays in and

62 out of these facilities into mainstem flows can result in substantial migration delays or failure to

63 continue migrations upstream to pass dams (Fretwell 1989; Thorstad et al. 2003b). Adult

64 Atlantic salmon (Salmo salar) have also been documented making 'yoyo' movements or

65 wandering backandforth between power station outlets and dam tailraces, ultimately causing

66 migration delays and reduced dam passage success (Lundqvist et al. 2008). Many labbased

67 experiments have revealed that migration responses in adult salmonids can be triggered by even

68 slight changes in natal water concentrations (reviewed in Bett and Hinch 2015), yet there has

69 been comparatively little research examining how such changes to natal water along migration

70 routes can influence the migration behaviour of freeswimming wild salmon.

71 In recent years, freshwater migrationDraft corridors have been warming (e.g. Patterson et al.

72 2007; Isaak et al. 2012) and many Pacific salmon now often encounter temperatures that can

73 exceed populationspecific thermal limits (Eliason et al. 2011). For adult sockeye salmon (O.

74 nerka), exposure to high temperatures accelerates maturation (Hinch et al. 2006), depletes energy

75 reserves (Hinch and Rand 1998; Burnett et al. 2014), increases physiological stress and disease

76 development (Crossin et al. 2008; Bradford et al. 2010), and reduces aerobic scope (Eliason and

77 Farrell 2015) – any or all of which can lead to en route mortality (e.g. Keefer et al. 2009; Hinch

78 et al. 2012). Pacific salmon will seek coolwater refuges (e.g. hypolimnion of lakes, tributary

79 outlets; Newell and Quinn 2005; Goniea et al. 2011) to reduce exposure to high temperatures and

80 increase chances of migration survival (Mathes et al. 2010). However, the use of thermal refugia

81 could also limit exposure to natal water cues if refuge is taken in nonnatal tributaries or areas of

82 substantial homestream odour diffusion, which could in turn lead to missed migration cues in the

83 mainstem migration corridor, and potentially increase migration delays. Prolonged delay in

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84 thermal refuges has also been shown to reduce the probability of surviving to natal sites by

85 migrating adult salmon (e.g. Columbia River steelhead O. mykiss; Keefer et al. 2009).

86 The physiological state of salmon can have strong effects on migration behaviours (Hinch

87 et al. 2006). For instance, elevated levels of acute metabolic stress and energy expenditure (as

88 reflected by increased plasma glucose and lactate levels; Milligan 1996; Farrell et al. 2000) in

89 ocean migrating adult Fraser River sockeye salmon are associated with delayed river entry and

90 slowed migration rates (Cooke et al. 2006; Crossin et al. 2007). Whereas in contrast, advanced

91 maturation (as reflected by high levels of plasma testosterone; Truscott et al. 1986; Leonard et al.

92 2002) is correlated with earlier river entry and fast migration rates (Sato et al. 1997; Crossin et

93 al. 2009). The important role of physiology is further emphasized in how sexes can differ in

94 migration behaviours. Females devote moreDraft energy to gonad development (Crossin et al. 2008)

95 and typically have higher levels of reproductive hormones than males throughout freshwater

96 migrations (Truscott et al. 1986). In the Fraser River, female sockeye salmon are energetically

97 more efficient swimmers (Hinch and Rand 2000), but are often less successful at passing

98 hydraulically challenging areas (Hinch and Bratty 2000; Burnett et al. 2013) compared to males.

99 How an individual’s physiological condition or sex affects migration behaviour in regulated

100 systems where natal water concentrations and flow composition can change during migration has

101 not yet been examined.

102 In this study, we used radio telemetry to track wild adult sockeye salmon from two

103 populations as they migrated during the summer and fall from a large mainstem system (Fraser

104 River) into a small, regulated, natal tributary (Seton River). Immediately prior to entering the

105 Seton River, migrants must pass by a powerhouse tailrace, which is likely attractive because it

106 discharges pure natal lake () water directly into the migration route and is sometimes

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107 cooler than the Fraser River, offering a potential thermal refuge. Natal water cues in the Seton

108 River can vary daily because of inputs from a nonnatal tributary (), which in turn

109 affects the availability and strength of natal Seton River water entering the Fraser River just

110 upstream of (and passing by) the powerhouse. This locale provides an ideal system in which to

111 examine the relative roles that flow composition (e.g. natal water cues), water temperature, and

112 thermal refugia can have on individual adult salmon behaviour as they migrate towards spawning

113 grounds.

114 We predicted that, if variation in natal water concentration does indeed affect migration

115 behaviour, adult sockeye salmon would spend more time in the powerhouse tailrace when natal

116 water concentration in the Seton River, entering the Fraser River just upstream, was low (see Fig.

117 1). We also predicted that if higher concentrationsDraft of natal water in the Seton River are expected

118 to encourage upstream migration, fish would display signs of ‘migratory confusion’, such as

119 enhanced wandering, when natal water concentration in the Seton River was reduced. Whereas,

120 we predicted that migrants would make more direct migrations towards the Seton River when its

121 natal water concentration was higher. We further hypothesized that if mainstem Fraser River

122 temperatures were approaching physiologically critical levels, fish would spend more time

123 delaying in the powerhouse tailrace, potentially using this area as a thermal refuge. Lastly, given

124 the physiological condition and sex of migrants are known to differentially affect behaviour, we

125 predicted that individuals that were more mature at tagging would migrate faster and more

126 directly towards the Seton River, whereas those that showed signs of stress would delay their

127 migration, likely in the powerhouse tailrace. We also expected that females would exhibit less

128 wandering and less delay at the powerhouse given their more limited energy budget.

129 Methods 130 Study system

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131 The BridgeSeton hydrosystem is a complex network of reservoirs, interbasin diversions,

132 and power generating stations operated by BC Hydro near Lillooet, British Columbia, Canada

133 (Fig. 1). Adult sockeye salmon first encounter the Seton Powerhouse (powerhouse) ~ 340 km

134 from the Pacific Ocean on the western bank of the Fraser River near the confluence of the Seton

135 River and Fraser River (Fig. 1). At the powerhouse, natal Seton Lake water diverted by the Seton

136 Dam is discharged from an underwater outlet into a 5meter deep tailrace directly adjacent to the

137 Fraser River (Fig. 1). Notably, there is no fish passage facility at the powerhouse and migrants

138 are prevented from entering the underwater outlet by steel grates. During adult sockeye salmon

139 migrations, mean discharge from the powerhouse is ~ 84.5 m3s1, or ~ 5% of the mean 1492.5

140 m3s1 of the adjacent Fraser River. Discharge from the powerhouse creates a plume of natal Seton

141 Lake water that visibly extends ~ 800 mDraft downstream into the Fraser River (Fig. 1). The Seton

142 River flows into the Fraser River 1.5 km upstream of the powerhouse (Fig. 1). The 5 kmlong

143 Seton River (22.7 m3s1mean annual discharge) is regulated by the Seton Dam, which is made

144 passable to migratory fish by a 107 m long, 32pool vertical slot fishway. Cayoosh Creek (13.9

145 m3s1 mean annual discharge) is the only tributary of the Seton River; it drains a separate, non

146 natal watershed (Fig. 1). During times of increased discharge from Cayoosh Creek, which occurs

147 due to operational changes at the Seton Dam or at Walden North (a small nonBC Hydro

148 diversion dam on Cayoosh Creek), or during large precipitation events, flows from this tributary

149 can ‘dilute the olfactory signature’ of the Seton River (Fretwell 1989) by reducing the

150 concentration of natal water cues in the Seton River and its plume. It is the combination of pure

151 natal Seton Lake water discharged at the powerhouse and reduction in natal water concentration

152 in the Seton River that creates the variable olfactory conditions of interest in this study (Fig. 1).

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153 Gates Creek (hereafter, GC) and Portage Creek (hereafter, PC) sockeye salmon are the

154 two populations of Fraser River sockeye salmon that spawn and rear in this system, representing

155 distinct ‘earlysummer’ and ‘laterun’ populations, respectively. The GC population typically

156 begins migrating into the hydrosystem in late July, travelling ~ 55 km past the Seton Dam

157 through Seton and Anderson Lakes to reach terminal spawning grounds at Gates Creek. PC

158 sockeye salmon begin migrating into the hydrosystem at the end of September, travelling ~ 20

159 km past the Seton Dam through Seton Lake to reach spawning grounds in Portage Creek.

160 Studies conducted throughout the 1970’s by the International Pacific Salmon Fisheries

161 Commission indicated that the upstream migration of both populations could be delayed at the

162 powerhouse, and that migrants often had difficulty navigating beyond this point (Fretwell 1989).

163 Results of behavioural choice (Ymaze)Draft experiments and limited radiotelemetry studies

164 suggested that minimizing delay and encouraging upstream migration past the powerhouse was

165 dependent on maintaining natal water levels in the Seton River and its plume at or above 80%

166 and 90% during the GC and PC migrations, respectively (Fretwell 1989). BC Hydro currently

167 operates the hydrosystem with measures in place to maintain these natal water dilution targets,

168 though large fluctuations still occur. Migration delays at the powerhouse followed by wandering

169 in the Fraser River are still observed in both populations (Casselman et al. 2015).

170 Fish capture and tagging

171 It was not possible to capture target or control populations of sockeye salmon in the

172 Fraser River for this study; therefore, all fish were captured using a fullspanning fence and trap

173 at a site 200 m downstream from the Seton Dam in the Seton River (Fig. 1). In total, we radio

174 tagged and monitored the movements of 517 sockeye salmon through the summer and fall of

175 2013 and 2014. Specifically, 138 GC sockeye salmon were tagged between 5 August and 2

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176 September 2013, and 166 were tagged between 5 August and 7 September 2014. In 2013, PC

177 sockeye salmon comigrated with ~ 0.8 million pink salmon (O. gorbuscha) returning to the

178 Seton River, making capture of PC sockeye salmon extremely difficult – only 24 individuals

179 were tagged from 3 – 9 October 2013. However, pink salmon were not present in 2014 (pinks

180 only return during odd years in the Seton River), enabling 189 PC sockeye to be captured and

181 tagged from 27 September to 9 October.

182 Radio transmitters [(43 mm length × 16 mm diameter; 15.2 g in air); Sigma Eight,

183 Newmarket, Ontario, Canada] were gastrically inserted into individual fish. Tags had a burstrate

184 of 3 s and a unique digital identification code. Individually labeled spaghetti tags (Floy

185 Manufacturing, Seattle, WA, U.S.A.) were attached externally through the dorsum of each fish,

186 with a tissue sample from the adipose finDraft and a 1.5 mL blood sample from the caudal vasculature

187 taken for population identification and physiological assays. Average time to tag and biopsy

188 sample each fish was < 4 minutes. Fish were not anesthetized to minimize handling and related

189 stress (Cooke et al. 2005). All handling and intragastric tagging methods followed procedures

190 used in many adult salmon tracking studies and are known not to affect behaviour or survival

191 (e.g. Ramstad and Woody 2003; Cooke et al. 2005). All procedures followed the methods

192 described in greater detail in (Roscoe et al. 2010b; Burnett et al. 2013, 2014), and were

193 conducted in accordance with the guidelines of the Canadian Council of Animal Care

194 administered by the University of British Columbia (A110125).

195 We selected fish for tagging based on visual inspection of injury, external pathogens and

196 somatic lipid content (measured by a handheld microwave energy meter – Fatmeter model 692;

197 Distell Inc., West Lothian, Scotland, UK; see Crossin and Hinch 2005). Severely injured fish

198 (e.g. lacerations exposing the coelomic cavity or skeletal system) or those with extensive fungus

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199 cover on body or gills were not tagged, nor were those with high somatic lipid concentrations.

200 An earlier study which compared DNA population identification to Fatmeter output from fish

201 captured at the fish fence revealed that these high energy fish were strays which had entered the

202 Seton River but whose spawning grounds were several 100 km’s further upstream in tributaries

203 of the Fraser River (Casselman et al. 2015). Sex was assigned by analysis of 17β estradiol and

204 testosterone concentrations in blood plasma. Plasma concentrations of glucose and lactate were

205 used as indices of metabolic stress (Cooke et al. 2008), and testosterone concentrations were

206 used to infer maturity level (Crossin et al. 2007). All blood plasma analyses followed the

207 methods described in (Roscoe et al. 2010b).

208 To examine how migrants behaved when they first encountered the powerhouse outflows

209 and Seton River plume, tagged fish wereDraft transported by truck downstream of the powerhouse for

210 release into the Fraser River. Groups of up to twelve individuals (approximate 50:50 sex ratio)

211 were moved via a 1000 L insulated and oxygenated transport tank and released within 30 min (±

212 10 min) of tagging, 1.5 km downstream from the powerhouse on the western bank of the Fraser

213 River (Fig. 1). We highlight that the use of passive capture methods followed by downstream

214 transport have been used in other studies with little effect on behaviour or survival (Keefer et al.

215 2004a, 2009; Hubert et al. 2012). Moreover, methods of upstream capture and downstream

216 release are common in studies of salmon migrating through regulated rivers (Thorstad et al.

217 2003b; Naughton et al. 2005; Caudill et al. 2007), and there is little evidence suggesting adult

218 salmon have the ability to learn migration routes or consequently behave differently from non

219 study fish (Hansen and Jonsson 1994; Thorstad et al. 2003b).

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220 Radio-telemetry monitoring of migration behaviour

221 We used a combination of fixed SRX (Lotek Wireless, Inc., Newmarket, Ontario,

222 Canada) and Orion (Sigma Eight, Inc., Newmarket, Ontario, Canada) radioreceivers fitted with

223 aerial Yagi antennas at different locations in the hydrosystem to monitor fish movement (Fig. 1).

224 The powerhouse receiver was configured to detect tags only in the tailrace and not in the

225 adjacent Fraser River. The receiver at the SetonFraser confluence was configured to only detect

226 tags within a ~ 100 m radius of the Seton River mouth. A receiver at the Fraser River release site

227 served as a ‘gate’ for detecting individuals exhibiting fallback in the Fraser River, whereas

228 receivers upstream in the Seton River confirmed Seton River entry or arrival at the Seton Dam

229 (Fig. 1). All receivers operated > 85% of the study duration, providing sufficient ability to

230 monitor fish movements (e.g. Release Site:Draft 92.4%; Seton Powerhouse: 98.3%; Lower Seton

231 River: 94.8%; SetonFraser confluence: 91.2%; SetonCayoosh confluence: 91.2%; Seton Dam:

232 95.7%)

233 Raw telemetry data were filtered to remove false detections (e.g. likely false detections of

234 study tag ID’s, nonstudy tag ID’s, detections recorded before release (Beeman & Perry 2012)

235 and generate migration histories. Migration behaviour was quantified by (1) counting the number

236 of entries individuals made into the powerhouse tailrace (hereafter ‘forays’) as a measure of

237 attraction to the outflows at this facility; (2) determining the number of interreceiver movements

238 (hereafter ‘wandering’) in the Fraser River between radio receivers at the powerhouse and the

239 SetonFraser confluence as an index of migration confusion; and (3) summing the duration of

240 each foray into the powerhouse tailrace as an estimate of the total amount of migration delay

241 incurred by individuals at this facility (hereafter ‘delay’). To ensure that the number of forays

242 and thus delay at the powerhouse were representative of true migration behaviour, we calculated

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243 each metric based on detections that were part of ‘residence events’. Residence events for a

244 given fish were defined as a series of consecutive detections at an individual receiver separated

245 by no more than 30 minutes. The duration of a residence event continued indefinitely until being

246 terminated when either (1) the time elapsed between any two consecutive detections was > 30

247 minutes, or when (2) a detection was recorded on another receiver.

248 Individual migration histories were visually examined to count the number of wandering

249 events in the Fraser River. We classified every change in direction prior to final assignment of

250 fate as a single wandering event. Fish with wandering values of zero exhibited directed

251 movements in the Fraser River, while fish with increasing wandering values exhibited the same

252 corresponding number of changes in direction prior to final assignment of fate. Fate was

253 assigned to individuals as having (1) successfullyDraft entered the Seton River if their last known

254 detection occurred at any receiver upstream of the SetonFraser confluence or into the Seton

255 Anderson watershed, (2) passed the Seton River and migrated further upstream in the Fraser

256 River if their last detection occurred at the SetonFraser confluence, (3) exhibited fallback

257 downstream in the mainstem Fraser River if their last detection occurred at the release site

258 receiver, or (4) be of unclassified fate if detections did not conform any of the aforementioned

259 patterns. Of the 304 GC sockeye salmon originally released for this study, 90% (274 of 304)

260 successfully entered the Seton River, 4% (12 of 304) migrated upstream of the SetonFraser

261 confluence, 3% (9 of 304) fell back downstream in the Fraser River, and 3% (9 of 304) had

262 unclassified fates. Of the 213 PC fish released, 80% (170 of 213) successfully entered the Seton

263 River, 6% (13 of 213) migrated upstream of the SetonFraser confluence, 13% (28 of 213)

264 returned downstream, and 1% (2 of 213) had unclassified fates. Fish that fell back downstream

265 after release and did not reascend may have suffered from some form of experimenterinduced

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266 stress. However, given that this occurred in a relatively small component of released fish, and

267 93% and 86% of GC and PC fish, respectively, reached the Seton River, we suspect our handling

268 and transport approaches probably had minimal effects on fish behaviour and shortterm

269 survival.

270 Environmental conditions

271 We used hourly measurements from the Water Survey of Canada

272 (www.wateroffice.ec.gc.ca) to monitor discharge in Cayoosh Creek (Station No. 08ME002) and

273 the Seton River below the Seton Dam (Station No. 08ME003). Hourly discharge data from the

274 powerhouse were provided by BC Hydro. We calculated hourly lower Seton River discharge by 275 summing (1) the upper Seton River discharge,Draft (2) Cayoosh Creek discharge, and (3) a constant 276 2.1 m3s1 of Seton Lake water diverted to an artificial spawning channel that is returned into the

277 lower Seton River before the SetonFraser confluence. We then calculated the concentration of

278 natal water in the lower Seton River and its plume using discharges in the following equation:

ℎ % = 100−100 × + ℎ + ℎ 279 We confirmed differences in the water chemistry between natal Seton River and nonnatal

280 Cayoosh Creek water – which reflects differences in olfactory cues – by collecting daily

281 conductivity measurements from Cayoosh Creek, the upper and lower Seton River, and the

282 powerhouse using a hand held YSI Pro30 conductivity meter (YSI Inc., Yellow Springs, OH,

283 USA). Conductivity has previously been used to distinguish between water sources used by other

284 anadromous fishes that use olfaction to guide homing (e.g. Leduc et al. 2010; Vrieze et al. 2011).

285 Hourly water temperatures were measured and collected using TidbiT v2 data loggers (Onset

286 HOBO data loggers, Bourne, MA) at locations in the Fraser River, the powerhouse, and the

287 lower Seton River (Fig. 1).

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288 Data analysis

289 Statistical models

290 We used both generalized linear (GLM) and linear models (LM) to relate migration

291 behaviour to characteristics of individual migrants and the environmental conditions they

292 encountered. Our analyses included three specific models to examine: (1) the number of forays

293 made into the powerhouse tailrace (Poisson or negative binomial GLM), (2) the number of

294 wandering events between the powerhouse tailrace and SetonFraser confluence (Poisson or

295 negative binomial GLM), and (3) the total amount of migration delay incurred at the powerhouse

296 tailrace (LM). All analyses were conducted on the GC and PC populations independently given 297 the different runtiming and environmentalDraft conditions experienced by the two populations. 298 Model construction

299 All global models included explanatory variables to account for effects of sex,

300 physiological state (plasma glucose and lactate levels), and the maturity level (plasma

301 testosterone level) of individuals at the time of tagging. Preliminary analyses included

302 interactions between sex and testosterone to test for the differences in reproductive actions this

303 hormone can have between males and females (Truscott et al. 1986; Ueda 2011). However, no

304 significant effects were observed, so this interaction was removed from the models reported on

305 below. Additionally, each model included variables to account for the effects of environmental

306 conditions on different migrant behaviours, including: temperatures encountered in the Fraser

307 River and in the powerhouse tailrace, the temperature differential between these two locations as

308 a measure of thermal refuge potential, and the natal water concentration of the Seton River

309 plume. Neither Fraser River nor Seton River discharge were included in any of the models

310 because GC and PC sockeye migrate upriver when flows are lowest in the migration season and

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311 at levels unlikely to affect behaviour (Rand et al. 2006; Macdonald et al. 2007). Moreover, water

312 temperature and discharge were highly correlated (r = 0.89). Powerhouse discharge was also not

313 included in any analyses because all fish included in the models experienced consistent discharge

314 of ~ 87.3 m3s1 in the tailrace.

315 Calculations of environmental variables were based on residence events and dependent

316 on each model response. Variables were calculated as means to ensure the best representation of

317 the overall conditions experienced by tagged individuals, and weightedmeans to emphasize the

318 effect of conditions experienced over longer periods of time. For Model 1, measurements were

319 used from the time of an individual’s the first detection of every foray into the powerhouse to

320 represent what conditions were like at the moment of movement into the tailrace. In Model 2,

321 means of conditions were weighted basedDraft on the duration of residence events that occurred at the

322 moment individuals changed migration direction between the powerhouse tailrace and the Seton

323 Fraser confluence. In Model 3, environmental variables were calculated as an overall average of

324 means were weighted by the duration of each foray into the powerhouse. Because each of the

325 models included explanatory variables that were measured on different scales (e.g. °C, %), and to

326 facilitate comparisons of the relative effect size of each, all the data for these variables were

327 standardized by centering (subtracting the mean) and dividing by two standard deviations

328 (Gelman 2008; Schielzeth 2010).

329 Prior to analysis, the data exploration protocols described in Zuur et al. (2010) were

330 applied to each model separately. Examinations of Cleveland dotplots were used to identify

331 outliers and variables with inordinate values to the majority of observations were removed (1 – 4

332 observations per model). Pearson correlation coefficients > 0.7 and variance inflation factors

333 (VIF) > 3 were used as thresholds to identify collinear variables (Zuur et al. 2010). In Models 1

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334 and 3 for PC sockeye salmon, the Fraser River temperature variable was highly collinear with the

335 natal water concentration variable. To account for this, we substituted tagging date for Fraser

336 River temperature because the two were related (r = 0.68), but not to the extent that tagging date

337 was collinear with the natal water concentration variable (VIF < 3). All models were constructed

338 based on a sample size of at least ten observations per explanatory variable.

339 Models 1 and 2 were initially fit with a Poisson GLM and assessed for overdispersion by

340 summing the square of the Pearson residuals and dividing by the degrees of freedom (McCullagh

341 and Nelder 1989). These models were deemed overdispersed (dispersion parameter > 1) and

342 subsequently refit with a negative binomial GLM (O'Hara and Kotze 2010). All final GLMs fit

343 the data adequately as assessed by a Chisquare test (P > 0.05; Smyth 2003). In Model 3, the

344 response variables were logtransformedDraft to satisfy assumptions of linearity and homogeneity of

345 residual variance (both assessed visually); linear model fits were evaluated using adjustedR2.

346 Model selection and multimodel averaging

347 In each analysis, models with all possible subsets of explanatory variables were fit to the

348 data. Models were then ranked using the biascorrected Akaike Information Criterion (AICC) and

349 compared using AICC weights (wi), which describes the probability of a model in a candidate set

350 being the most parsimonious, given the data (Burnham and Anderson 2003). Uncertainty in

351 model selection was accounted for by calculating modelaveraged estimates of the coefficients

352 using the ‘zero’ method (Grueber et al. 2011), where variables not included in the models were

353 assigned coefficient values of 0 to indicate no effect. Only models included in the 95%

354 confidence set were used for model averaging (Burnham and Anderson 2003), and only

355 explanatory variables with 95% confidence intervals that did not include zero were considered to

356 have an important effect on the response. Model selection statistics for all models with AIC

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357 values < 2 are presented in Table 2. All statistical analyses were conducted in R using the

358 MuMIn package (R Development Core Team, 2008; version 3.1.2). All summary variables are

359 presented as means ±SD.

360 Results 361 Environmental conditions 362 The mean Fraser River temperature experienced by GC sockeye salmon in this study was

363 18.3°C (±1.3°C), although temperatures varied considerably over the entire 2013 and 2014

364 migrations, with some periods reaching near record summer highs (~ 22°C; Fig. 2a). On average,

365 GC fish encountered temperatures in the powerhouse tailrace of 17.9°C (±1.1°C); there were

366 opportunities for migrants to seek thermal refuge in this area as temperatures were between 0.5 –

367 4.0°C cooler than the adjacent Fraser RiverDraft for 42% of the GC migration; although temperatures

368 in this area could also be warmer than the Fraser River as well (Fig. 2a). For more than 83% of

369 both study years, natal water concentration in the Seton River plume remained above the

370 recommended 80% target for the GC population (Fig. 2b), with tagged fish on average

371 experiencing concentrations of 90.3% (±4.6%) natal water.

372 PC sockeye salmon are a laterun population that migrates during the fall months, thus

373 they encountered Fraser River temperatures that were substantially cooler than during the GC

374 migration (Fig. 2a). For example, PC fish tracked in this study experienced mean Fraser River

375 temperatures of 11.8°C (±0.7°C) with no need for thermal refuge in the Powerhouse tailrace as

376 the average temperature in this area of 14.6°C (±0.5°C) was consistently warmer than the

377 adjacent Fraser River (Fig. 2a). Natal water concentration in the Seton River plume remained

378 above the 90% target for the PC population for over 87% of both 2013 and 2014 migrations,

379 while the mean concentration experienced by PC fish in this study was 91.4% (±1.2%) (Fig. 2b).

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380 Physiological state and reproductive hormone levels 381 We compared mean levels of plasma glucose, lactate, and testosterone between sexes,

382 populations, and years. There were no differences between years within each of the parameters

383 measured for each population (Table 1). Glucose levels were very similar among males and

384 females, both within and between the populations (Table 1). However, lactate was ~1.4 times

385 higher in females compared to males in each population, and ~1.3 times higher among all GC

386 fish relative to PC fish (Table 1). Testosterone was considerably higher in females compared to

387 males for both populations (5.6 times higher in GC population; 4.9 times higher in PC

388 population), and PC sockeye salmon had 2.2 times higher levels of this hormone than GC

389 sockeye salmon (Table 1).

390 Powerhouse attraction and forays Draft 391 Of all the tagged GC and PC sockeye salmon released into the Fraser River, 87% (265 of

392 304) and 91% (193 of 213), from each population respectively, made at least one foray into the

393 powerhouse. However, we only included fish in models predicting forays that had complete

394 physiological profiles (255 GC and 90 PC sockeye salmon) (fates are given by sex and

395 population in Supplementary Table 1). Fiftysix percent (142 of 255) of these GC fish made only

396 one foray into the powerhouse, while the remainder made up to 8 forays (Fig. 3a). In contrast,

397 43% of the modeled PC fish (39 of 90) made only one foray into the powerhouse, while the

398 remainder made up to 17, with one PC female making 24 forays (Fig. 3b). On average, modeled

399 PC sockeye salmon (3.6 forays ± 4.0) made nearly twice as many forays into the powerhouse as

400 GC fish overall (1.9 forays ± 1.4) (Fig. 3 a & b).

401 AIC model selection results indicated a large amount of uncertainty in foray models for

402 GC fish, whereas there was less uncertainty in models for PC fish (Table 2; Supplementary Table

403 2). Nevertheless, there are trends among explanatory variables that are consistent between

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404 populations. Sex was absent from the majority of models in the 95% confidence set for both

405 populations because males and females made a similar number of forays (Table 2; Fig. 3 a & b).

406 Modelaveraged estimates for the effect of blood glucose on forays in both populations were

407 negative and ~ 2 times larger than those of lactate, suggesting individuals with elevated levels of

408 glucose may have made fewer forays into the powerhouse (Fig. 3 c & d). Testosterone effects

409 were positive for both populations, implying that increasingly mature fish may have made more

410 forays into this facility (Fig. 3 c & d). Blood glucose and testosterone, however, did not appear to

411 influence forays in either population, as the 95% confidence intervals (hereafter ‘CIs’) included

412 zero (Fig. 3 c & d).

413 Natal water concentration and powerhouse temperature had the largest effects on forays

414 among PC fish and were included in theDraft majority of models from the 95% confidence set (Table

415 2). Estimates for these effects were negative and had CIs that did not include zero, indicating that

416 PC fish that encountered higher natal water concentrations or elevated powerhouse temperatures

417 made fewer forays into this facility (Fig. 3d). Foray behaviour among GC sockeye salmon was

418 largely unaffected by natal water concentration or powerhouse temperatures, as these effects

419 were absent from most of the models in the 95% confidence set (Table 2; Fig.3c). We found little

420 indication that foray behaviour in fish from either population was affected by the temperature

421 differential between the powerhouse tailrace and Fraser River (Fig. 3 c & d).

422 Wandering 423 Models predicting wandering behaviour included 235 GC and 78 PC sockeye salmon

424 with complete physiology and maturity profiles (fates are given by sex and population in

425 Supplementary Table 1). Eightythree percent (195 of 235) and 73% (57 of 78) of GC and PC

426 sockeye salmon, respectively, migrated upstream in the Fraser River without exhibiting any

427 interreceiver movements (Fig. 4 a & b). Males and females within each population displayed

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428 similar amounts of wandering (Fig. 4 a & b), although there was more variability in this

429 behaviour among PC fish. Twentyseven percent of PC migrants wandered from 1 and 5 times,

430 while 17% of the GC migrants wandered from 1 to 4 times (Fig. 4 a & b).

431 There was a fair amount of uncertainty in the model selection results from models

432 predicting wandering (Table 2; Supplementary Table 2). Lactate was included in the majority of

433 the models from the 95% confidence set for both populations and had a negative effect that was

434 more than twice that of glucose, suggesting that wandering may have been reduced in fish with

435 higher levels of this stress metabolite (Table 2; Fig. 4 c & d). In each case, the CIs for these

436 effect estimates of lactate narrowly included zero (Fig. 4 c & d).

437 Fraser River temperature had little effect on wandering among GC fish but was included

438 in the majority of the models in the 95%Draft confidence set for the PC population, suggesting this

439 behaviour may have been reduced in PC fish that encountered cooler Fraser River temperatures

440 (Table 2; Fig. 4 c & d). Temperatures in the powerhouse tailrace had similar size but opposite

441 effects on the two stocks, implying that warmer temperatures at this facility may have been

442 associated with increased wandering among GC sockeye salmon and less among PC sockeye

443 salmon (Fig. 4 c & d). We did not find evidence that the temperature differential between the

444 powerhouse tailrace and the Fraser River influenced wandering in either population (Table 2;

445 Fig. 4 c & d).

446 Natal water was included in the majority of the models from the 95% confidence set for

447 PC fish (Table 2) and had the largest effect of all predictors on wandering within this population

448 (Fig. 4d). Wandering was reduced among PC sockeye salmon that encountered higher

449 concentrations of natal water in the Seton River plume, while wandering among GC fish was

450 largely unaffected by changes in natal water (Fig. 4c).

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451 Powerhouse delay 452 Models predicting the total amount of migration delay incurred by individuals in the

453 powerhouse tailrace included 256 GC and 90 PC sockeye salmon with complete physiology and

454 maturity profiles (fates are given by sex and population in Supplementary Table 1). We found no

455 effect of sex on powerhouse delay in models for either population (Table 2; Fig. 5 b & c). Mean

456 delay times of GC females (5.3 hours ± 6.4) were only slightly higher than GC males (3.4 hours

457 ± 3.9), and only slightly lower among PC females (19.5 hours ± 18.5) compared to PC males

458 (23.4 hours ± 27.1). Overall, PC sockeye salmon (21.1 hours ± 22.3) delayed ~ 5 times longer

459 than GC fish (4.5 hours ± 5.6) (Fig. 5a).

460 Glucose was included in the majority of models from the 95% confidence set and had the 461 largest effect on delay among GC sockeyeDraft salmon (9 times greater than that of lactate), 462 indicating that GC fish with elevated levels of this stress metabolite incurred less delay in the

463 powerhouse tailrace (Table 2; Fig. 5b). Neither glucose nor lactate had any effect on delay

464 among PC fish, and there was little support for testosterone effects on delay in either population

465 (Table 2; Fig. 5 b & c).

466 Natal water concentration was included in the majority of models from the 95%

467 confidence set for the PC population, with the largest relative effect size of all predictors (Table

468 2; Fig. 5c). Delay at the powerhouse decreased when PC fish encountered increasing

469 concentrations of natal water emanating from the Seton River plume. Effects of temperatures in

470 the powerhouse tailrace itself were also wellsupported in models for the PC population, with a

471 strong negative effect indicating that PC fish delayed less during periods of elevated

472 temperatures at this facility (Table 2; Fig. 5c). Despite a similar trend among GC fish, CIs for the

473 effect of powerhouse tailrace temperature included zero (Fig. 5b). Finally, there was no

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474 indication that the temperature differential between the powerhouse tailrace and the Fraser River

475 affected delay in either population (Fig. 5 b & c).

476 Discussion 477 We monitored the behaviour of two populations of Fraser River sockeye salmon in

478 relation to metabolic stress, river temperature, and varying natal water concentration during

479 migration past a powerhouse outlet and passage into their natal tributary, the Seton River.

480 Contrary to our expectations, metabolic stress indices in fish from both populations had little

481 influence on behaviour in this short section of the migration corridor. Fraser River temperature

482 was also unrelated to behaviour in both populations, and there was little evidence that the ‘early

483 summer’ GC population utilized the powerhouse tailrace as an area of thermal refuge. However, 484 encounters with higher concentrations ofDraft natal water led individuals from the ‘laterun’ PC 485 population to make more direct migrations into the Seton River, in contrast to the GC population

486 who’s behaviour was unaffected by changes in natal water concentration.

487 All radiotagged sockeye salmon in this study entered the powerhouse tailrace as they

488 migrated up the Fraser River enroute to the Seton River, spending varying amounts of time in

489 this area before resuming their migration. Adult Atlantic salmon migrating up rivers in Norway

490 and Sweden are known to be attracted to turbine outlets and can make several movements in and

491 out of these tailrace areas (Thorstad et al. 2003a; Lundqvist et al. 2008). In these studies, tailrace

492 discharges were usually far greater than bypass flows, and thus hypothesized to be the primary

493 cause of tailrace attraction. However, in our study, discharge from the powerhouse was only ~

494 5% of Fraser River discharge, suggesting that initial attraction to the powerhouse occurs either

495 because of the strong olfactory cues coming directly from the natal Seton Lake water discharged

496 at the powerhouse, and/or because the powerhouse provides some degree of thermal refuge

497 during periods of the GC migration.

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498 One of the most striking findings in this study were the populationspecific differences in

499 how migrants behaviourally responded to the environmental factors encountered in this short

500 segment of their shared migration corridor. On average, PC sockeye salmon spent 4 to 5 times

501 longer than GC sockeye in the powerhouse tailrace (mean ~ 25 hours vs. 5 hours, respectively).

502 Laterun populations of Fraser River sockeye salmon (e.g. PC fish) are known to migrate slower

503 up the Fraser River than summer run populations (e.g. GC fish; English et al. 2005). Unlike

504 summerruns, laterun fish usually mill in natal lakes prior to entering spawning grounds (Hinch

505 et al. 2012), so this extended delay in the powerhouse tailrace was not unexpected considering

506 that PC fish are only ~ 8 km from their natal lake. Consistent with our hypothesis, we found that

507 changes in the concentration of natal water had a strong effect on migration behaviour, but only

508 for the PC population. Specifically, lowerDraft natal water concentrations emanating from the Seton

509 River into the Fraser River were associated with more forays into the powerhouse tailrace, more

510 overall time in the tailrace, and more wandering in the Fraser River. It thus appeared that PC

511 migrants became confused when natal water concentrations were reduced and migrated less

512 directly along their correct migration path. Given the narrower natal water concentration range

513 experienced by PC migrants during the study (~ 85 – 94% natal water) compared to that of GC

514 migrants (~ 60 – 95% natal water), it is possible that PC migrants could be more sensitive to

515 subtle changes in olfactory cues. PC fish were likely more mature than GC fish (based on higher

516 testosterone concentrations and proximity to natal spawning sites) at the time of tagging, and

517 thus may exhibit a degree of heightened olfactory sensitivity with increased maturity, similar to

518 that observed in common carp (Cyprinus carpio) in the Mississippi River, U.S.A (Irvine and

519 Sorensen 1993). If such a relationship does indeed exist, this may explain why PC fish could be

520 more sensitive to even slight changes in natal homestream water concentration at this stage in

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521 their migration. In addition, the densities of comigrating conspecifics from other populations of

522 Fraser River sockeye salmon are much higher during the GC migration than during the PC

523 migration (English et al. 2005). Thus, the additional directional cues that adult salmon rely on for

524 navigation (e.g. conspecific pheromones; Groot et al. 1986; Bett and Hinch 2015) may be less

525 present during the PC migration and lead to more ‘confusion’ and delay within this later run

526 population.

527 High migration temperatures are stressful for upriver migrating adult salmon and

528 individuals will alter their migration times to avoid peak temperatures (e.g. Columbia River

529 sockeye & steelhead; Quinn and Adams 1996; Robards and Quinn 2011), and seek cool water

530 refugia in tributaries and lakes when possible (e.g. Columbia and Fraser River sockeye &

531 Chinook; Hodgson and Quinn 2002; GonieaDraft et al. 2011). However, the Fraser River provides

532 very few areas of thermal refuge during summer migration periods (Donaldson et al. 2009), so

533 we had hypothesized that the powerhouse tailrace could serve as a thermal refuge for migrants if

534 mainstem temperatures were high. Indeed, many GC fish experienced Fraser River temperatures

535 that were well above the population optimum (~ 17°C; Lee et al. 2003) and near their known

536 thermal limit (~ 21°C; Eliason et al. 2011), where aerobic scope collapses and fish must rely on

537 anaerobic metabolism risking acidosis and cardiorespiratory failure (Farrell et al. 2008).

538 However, we found no evidence for GC fish that the number of forays into or delay in the

539 powerhouse tailrace increased when tailrace water was cooler or when the temperature

540 differential between the tailrace and the Fraser River was large. In fact, there were many periods

541 in which tailrace temperatures were very similar to, or even greater than Fraser River

542 temperatures, thus limiting opportunities for the powerhouse tailrace to act as a thermal refuge.

543 Contrary to our hypothesis, GC fish spent relatively little time in the powerhouse tailrace, and

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544 instead migrated quickly into the Seton River. It is worth noting, however, that the hypolimnion

545 of Seton Lake is only ~ 6 km from the powerhouse tailrace; GC sockeye are known to occupy

546 this cool lake water while en route to spawning grounds (Roscoe et al. 2010a) perhaps in part

547 explaining the limited delays in the powerhouse tailrace and relatively fast passage through the

548 lower hydrosystem. During the migration of PC fish, there was likely no need for individuals to

549 seek thermal refuge in the powerhouse tailrace as the Fraser River was always 2 – 3°C cooler.

550 Yet, temperature still appeared to play a role in behaviour in that warmer tailrace temperatures

551 were associated with shorter delays and less forays into the tailrace of this facility. Caudill et al.

552 (2013) found that adult Snake River Chinook salmon and steelhead would avoid high

553 temperatures in fishways and remain in cooler dam tailraces. In a similar manner, PC fish may

554 choose to avoid the powerhouse tailraceDraft and spend more time in the cooler Fraser River where

555 temperatures are closer to optimum for laterun sockeye at this time of year (Lee et al. 2003;

556 Farrell et al. 2008; Eliason et al. 2011). High concentrations of natal Seton River water entering

557 the Fraser River were associated with less delay and fewer forays into the tailrace, but the

558 interactive roles of olfaction and thermal biology in altering behaviour of migrating PC fish

559 could not be examined in these models because temperature and natal water variables were

560 highly collinear.

561 We had anticipated that initial physiological state would play a role in population specific

562 behaviours by predicting that sockeye salmon which were initially more mature would migrate

563 more directly toward their natal tributary, while those with high levels of stress metabolites

564 would delay their migration, likely in the powerhouse tailrace where they might be able to

565 recover from stressful conditions away from the mainstem Fraser River. However, we found

566 little evidence that the physiological state of individuals within a population influenced

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567 behaviour. The only exception was GC fish, which spent less time delaying in the powerhouse

568 tailrace when their plasma glucose concentrations were relatively high. Elevated glucose can be

569 indicative of recovery from swimming fatigue and excessive handling or confinement (Nielsen et

570 al. 1994; Farrell et al. 1998; Kubokawa et al. 1999). It is possible that GC fish were experiencing

571 some modest physiological stress from migrating ~ 340 km upriver during peak summer

572 temperatures. Plasma glucose levels at time of capture were well above baseline, although

573 similar to levels found previously in GC fish captured at this locale (Roscoe et al. 2010b), but not

574 as high as those recorded for summer run sockeye salmon captured in the lower Fraser River

575 (Donaldson et al 2010). Because we found there was only limited opportunity for thermal refuge

576 in the powerhouse tailrace during the GC migration, exhausted or physiologically compromised

577 individuals may have chosen to avoid thisDraft unfavorable area and move more quickly to the Seton

578 River where flows and temperatures were lower and more conducive to physiological recovery.

579 Indeed, it has been shown that sockeye salmon in the Columbia River migrate more rapidly

580 toward natal tributaries as mainstem temperature increases (Naughton et al. 2005; Keefer et al.

581 2008b).

582 We had hypothesized that given their more limited energy budgets for swimming activity

583 females would exhibit less wandering and less delay at the powerhouse compared to males.

584 Testosterone levels were substantially higher among females from both populations, which is

585 typical of sockeye salmon throughout their freshwater migration (Truscott et al. 1986; Crossin et

586 al. 2007; Donaldson et al. 2010). Testosterone also increases steadily in both sexes with

587 decreasing distance to natal sites as oocytes and testes prepare for final maturation (Truscott et

588 al. 1986; Hinch et al. 2006), perhaps explaining why PC fish had nearly twice as high plasma

589 testosterone as GC fish given the much shorter distance remaining to PC spawning grounds.

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590 However, despite their higher testosterone level, females from both populations did not behave

591 differently than males. We highlight that this was unexpected given that recent findings from

592 physiological telemetry have found that females swim with more anaerobic effort (more burst

593 swimming) when passing through the Seton Dam tailrace and through the adjoining fishway

594 compared to males (Burnett et al. 2014). Female sockeye often suffer higher levels of mortality

595 than males towards the end of freshwater migrations (Hodgson and Quinn 2002; Keefer et al.

596 2004a, Donaldson et al. 2010; Martins et al. 2012), in part due to exhaustion of energy reserves

597 or cardiorespiratory collapse since they have a smaller ventricular mass (Sandblom et al. 2009).

598 Perhaps we did not observe behavioural differences between sexes because our short study reach

599 did not offer significant enough energetic challenges or obstacles (e.g. high discharge,

600 temperatures frequently above optimal) Draftnecessitating females to either attempt to conserve

601 energy by slowing or delaying migration, or, require a high degree of burst swimming.

602 Management implications

603 Although it is widely recognized that migrating adult salmon rely on the detection of

604 natal water cues to successfully navigate toward natal spawning sites (reviewed in Bett and

605 Hinch 2015), it is often overlooked how river regulation for hydropower production can affect

606 flow composition and natal water concentration in migration corridors. Indeed, adult salmon

607 have been documented exhibiting signs of migration confusion in rivers where natal water cues

608 have become diffuse or redirected through regulation (e.g. Columbia River Chinook salmon,

609 Keefer et al. 2008; Atlantic salmon, Lundqvist et al. 2008). However, until now, there has been

610 little research examining the relative effect of this factor on the behaviour of adult salmon

611 migrating through regulated river corridors. In the current study, we present some of the first

612 detailed analyses of how varying concentrations of natal water cues, in combination with

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613 dynamic river temperatures, and the physiological condition of migrants can affect behaviour in

614 wild adult salmon. We highlight the importance of accounting for dynamic natal water

615 conditions in future studies aimed at improving adult salmon passage through regulated

616 migration corridors.

617 In the Seton hydrosystem, it has long been recognized that the environmental conditions

618 created by the Seton powerhouse and fluctuating natal water concentrations in the Seton River

619 could cause significant delays for upriver migrating sockeye salmon (Fretwell 1989). Water

620 preference experiments (‘Ymaze’ behaviour studies) conducted in the late 1970s and early

621 1980s demonstrated that adult sockeye salmon were capable of discriminating between Seton

622 River and Cayoosh Creek water, and that olfaction was the primary sensory mechanism used by

623 fish to select different water sources forDraft homing through the hydrosystem (Fretwell 1989). These

624 studies provided in-situ experimental evidence that suggested migration delay in the powerhouse

625 tailrace could be mitigated by controlling Seton River discharge to maintain natal Seton River

626 water concentrations equal to or greater than the threshold of sensitivity exhibited by the two

627 populations (80% GC and 90% PC; Fretwell 1989). Based on these results, BC Hydro built a

628 diversion dam on Cayoosh Creek in an attempt to maintain the Cayoosh Creek component of the

629 Seton River discharge to 20% and 10% during the upstream migration period for GC and PC

630 sockeye runs, respectively. Recent Ymaze experiments with both populations have reconfirmed

631 these olfactory sensitivity thresholds (Casselman et al. 2015). In the present study, natal water

632 concentrations generally exceeded threshold targets except for a oneweek period during the

633 2013 GC migration (Fig. 2b). Despite a large range of natal water concentrations experienced by

634 GC sockeye, we could not find any effects of this factor on delay or other behaviours, and these

635 fish seemed to have little difficulty rapidly homing into the Seton River. On the other hand, even

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636 though threshold natal water concentrations were exceeded for PC migrants, lower natal water

637 concentration relative to the 90% threshold for this population increased tailrace delay and

638 slowed migration into the Seton River. Given that tailrace temperature also affected delay at the

639 powerhouse and the apparent olfactory sensitivity displayed by PC fish, the 10% Cayoosh Creek

640 water threshold may need to be reevaluated. Because of the difficulties associated with

641 capturing control fish from nonnatal populations of comigrating sockeye salmon in the

642 mainstem Fraser River, future experimental manipulation of natal water concentration in the

643 Seton River and its plume should be explored to isolate the effect of the natal water factor from

644 temperature and more thoroughly understand its effect on the migration behaviour of the PC

645 population.

646 Fraser River water temperaturesDraft have a significant effect on sockeye salmon migration

647 and spawning success and affect the condition of individuals upon arrival in the SetonAnderson

648 watershed. Peak summer water temperatures in the Fraser River have increased > 2°C in the past

649 60 years, with recent years exhibiting record high levels and climate models predicting even

650 warmer peak temperatures in future years (Patterson et al. 2007; Ferrari et al. 2007). GC fish

651 now typically encounter Fraser River temperatures exceeding 18 – 19 °C, with prolonged

652 exposure to such stressful temperatures causing migration mortality (Eliason et al. 2011). Even

653 though GC fish did not delay for long periods in the powerhouse tailrace enroute to the Seton

654 River, the fact that fish are increasingly encountering thermally stressful migrations prior to

655 reaching the Seton hydrosystem means that any small delay caused by the powerhouse or by

656 varying olfactory cues from the Seton River could be devastating if delays expose fish to

657 additional thermal stress. Thus, managers should continue to strive to achieve the natal water

658 targets established for this population.

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659 Acknowledgments 660 We thank W. Payne, R. Ledoux, J. Hopkins, A. Adolph, and C.F. White for their

661 assistance in the field. We acknowledge D. McCubbing (InStream Fisheries Research), Lance

662 and Leo O’Donaghey and C. Fletcher (N’Quatqua First Nation) for their support with the fish

663 fence. C. Storey, T. Nettles, and J. Hills (Fisheries and Oceans Canada) provided logistical

664 support and ran all physiological assays. Project funding was provided by B.C. Hydro, St’át’imc

665 Eco Resources, National Science and Engineering Research Council of Canada (NSERC)

666 Discovery, Strategic and Network (Canada’s Ocean Tracking Network) grants to S.G.H. Some

667 infrastructure was also supported by the Canada Foundation for Innovation. C.T.M. was

668 supported by an NSERC CGSM scholarship and a MITACS Accelerate internship.

669 References Draft 670 Alerstam, T., Hedenström, A., and Åkesson, S. 2003. Long‐distance migration: evolution and

671 determinants. Oikos 103 (2): 247–260.

672 673 Andrew, F.J., and Geen, G.H. 1958. Sockeye and pink salmon investigations at the Seton Creek

674 hydroelectric installation. International Pacific Salmon Fisheries Commission Progress

675 Report No. 4. 78 pp.

676 677 Beeman, J.W., and Perry R.W. 2012. Bias from falsepositive detections and strategies for their

678 removal in studies using telemetry. Pp 505 – 518 in Telemetry Techniques: A User Guide for

679 Fisheries Research. Adams, N S, Beeman, J W & Eiler, J H (eds). American Fisheries

680 Society, Bethesda, MD.

681 682 Bett, N.N., and Hinch, S.G. 2015. Olfactory navigation during spawning migrations: a review

683 and introduction of the Hierarchical Navigation Hypothesis. Biological Reviews 91 (3): 728

684 759. doi:10.1111/brv.12191.

30 https://mc06.manuscriptcentral.com/cjfas-pubs Page 31 of 57 Canadian Journal of Fisheries and Aquatic Sciences

685 686 Bradford, M.J., Lovy, J., Patterson, D.A., Speare, D.J., Bennett, W.R., Stobbart, A.R., and

687 Tovey, C.P. 2010. Parvicapsula minibicornis infections in gill and kidney and the premature

688 mortality of adult sockeye salmon (Oncorhynchus nerka) from Cultus Lake, British

689 Columbia. Can. J. Fish. Aquat. Sci. 67 (4): 673–683.

690 691 Brett, J.R. 1971. Energetic responses of salmon to temperature study of some thermal relations

692 in physiology and freshwater ecology of sockeye salmon (Oncorhynchus nerka). American

693 Zoologist 11 (1): 99–113.

694 695 Bugert, R.M., and Mendel, G.W. 1997. Adult returns of subyearling and yearling fall Chinook 696 salmon released from a Snake RiverDraft hatchery or transported downstream. North American 697 Journal of Fisheries Management 17 (3): 638–651.

698 699 Burnett, N.J., Hinch, S.G., Donaldson, M.R., Furey, N.B., Patterson, D.A., Roscoe, D.W., and

700 Cooke, S.J. 2013. Alterations to damspill discharge influence sexspecific activity,

701 behaviour and passage success of migrating adult sockeye salmon. Ecohydrology 7 (4):

702 10941104. doi:10.1002/eco.1440.

703 704 Burnett, N.J., Hinch, S.G., Braun, D.C., Casselman, M.T., Middleton, C.T., Wilson, S.M., and

705 Cooke, S.J. 2014. Burst swimming in areas of high flow: delayed consequences of

706 anaerobiosis in wild adult sockeye salmon. Physiological and Biochemical Zoology 87 (5):

707 587–598.

708 709 Burnett, N.J., Hinch, S.G., Bett, N.N., Braun, D.C., Casselman, M.T., Cooke, S.J., Gelchu, A.,

710 Lingard, S., Middleton, C.T., MinkeMartin, V., and White, C.F.H. 2016. Reducing

31 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 32 of 57

711 carryover effects on the migration and spawning success of sockeye salmon through a

712 management experiment of dam flows. River Research and Applications 33 (1): 315.

713 doi:10.1002/rra.3051.

714 715 Burnham, K.P., and Anderson, D.R. 2003. Model selection and multimodel inference. Springer

716 Science & Business Media, New York, NY.

717 718 Carruth, L.L.L., Jones, R.E.R., and Norris, D.O.D. 2002. Cortisol and Pacific salmon: a new look

719 at the role of stress hormones in olfaction and homestream migration. Integrative and

720 Comparative Biology 42 (3): 574–581.

721 722 Casselman, M.T., Bett, N.N., Drenner, S.M.,Draft Middleton, C.T., MinkeMartin, V.M., and Hinch, 723 S.G. 2016. BRGMON14 Effectiveness of Cayoosh Creek flow dilution, dam operation, and

724 fishway passage on delay and survival of upstream migration of salmon in the Seton

725 Anderson watershed. Annual Report 2015. Report prepared for St’át’imc Government

726 Services and BC Hydro. The University of British Columbia, Vancouver, BC.

727 728 Caudill, C.C., Daigle, W.R., Keefer, M.L., Boggs, C.T., Jepson, M.A., Burke, B.J., Zabel, R.W.,

729 Bjornn, T.C., and Peery, C.A. 2007. Slow dam passage in adult Columbia River salmonids

730 associated with unsuccessful migration: delayed negative effects of passage obstacles or

731 conditiondependent mortality? Can. J. Fish. Aquat. Sci. 64 (7): 979–995.

732 733 Caudill, C.C., Keefer, M.L., Clabough, T.S., Naughton, G.P., Burke, B.J., and Peery, C.A. 2013.

734 Indirect effects of impoundment on migrating fish: temperature gradients in fish ladders slow

735 dam passage by adult Chinook salmon and steelhead. PLoS ONE 8 (12).

736 doi:10.1371/journal.pone.0085586.

32 https://mc06.manuscriptcentral.com/cjfas-pubs Page 33 of 57 Canadian Journal of Fisheries and Aquatic Sciences

737 738 Cooke, S.J., Crossin, G.T., Patterson, D.A., English, K.K., Hinch, S.G., Young, J.L., Alexander,

739 R.F., Healey, M.C., Van Der Kraak, G., and Farrell, A.P. 2005. Coupling noninvasive

740 physiological assessments with telemetry to understand interindividual variation in

741 behaviour and survivorship of sockeye salmon: development and validation of a technique.

742 Journal of Fish Biology 67 (5): 1342–1358.

743 744 Cooke, S.J., Hinch, S.G., Crossin, G.T., Patterson, D.A., English, K.K., Healey, M.C.,

745 Shrimpton, J.M., Van Der Kraak, G., and Farrell, A.P. 2006. Mechanistic basis of individual

746 mortality in Pacific salmon during spawning migrations. Ecology 87 (6): 1575–1586.

747 748 Crossin, G.T., Hinch, S.G., Cooke, S.J.,Draft Welch, D.W., Batten, S.D., Patterson, D.A., Van Der 749 Kraak, G., Shrimpton, J.M., and Farrell, A.P. 2007. Behaviour and physiology of sockeye

750 salmon homing through coastal waters to a natal river. Marine Biology 152 (4): 905–918.

751 752 Crossin, G.T., Hinch, S.G., Cooke, S.J., Welch, D.W., Patterson, D.A., Jones, S.R.M., Lotto,

753 A.G., Leggatt, R.A., Mathes, M.T., Shrimpton, J.M., Van Der Kraak, G., and Farrell, A.P.

754 2008. Exposure to high temperature influences the behaviour, physiology, and survival of

755 sockeye salmon during spawning migration. Canadian Journal of Zoology 86 (2): 127–140.

756 757 Crossin, G.T., Hinch, S.G., Cooke, S.J., Cooperman, M.S., Patterson, D.A., Welch, D.W.,

758 Hanson, K.C., Olsson, I., English, K.K., and Farrell, A.P. 2009. Mechanisms influencing the

759 timing and success of reproductive migration in a capital breeding semelparous fish species,

760 the sockeye salmon. Physiological and Biochemical Zoology 82 (6): 635–652.

761 762 Dingle, H., and Drake, V.A. 2007. What is migration? BioScience 57 (2): 113121.

33 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 34 of 57

763 764 Donaldson, M.R., Cooke, S.J., Patterson, D.A., Hinch, S.G., Robichaud, D., Hanson, K.C.,

765 Olsson, I., Crossin, G.T., English, K.K., and Farrell, A.P. 2009. Limited behavioural

766 thermoregulation by adult uprivermigrating sockeye salmon (Oncorhynchus nerka) in the

767 Lower Fraser River, British Columbia. Canadian Journal of Zoology 86 (6): 480–490.

768 769 Donaldson, M.R., Hinch, S.G., Patterson, D.A., Farrell, A.P., Shrimpton, J.M., Miller Saunders,

770 K.M., Robichaud, D., Hills, J., Hruska, K.A., Hanson, K.C., English, K.K., Van Der Kraak,

771 G., and Cooke, S.J. 2010. Physiological condition differentially affects the behavior and

772 survival of two populations of sockeye salmon during their freshwater spawning migration.

773 Physiological and Biochemical Zoology 83 (3): 446–458.

774 Draft 775 Donaldson, M.R., Hinch, S.G., Patterson, D.A., Hills, J., Thomas, J.O., Cooke, S.J., Raby, G.D.,

776 Thompson, L.A., Robichaud, D., English, K.K., and Farrell, A.P. 2011. The consequences of

777 angling, beach seining, and confinement on the physiology, postrelease behaviour and

778 survival of adult sockeye salmon during upriver migration. Fisheries Research 108 (1):

779 133–141.

780 781 Eliason, E.J., and Farrell, A.P. 2015. Oxygen uptake in Pacific salmon Oncorhynchus spp.: when

782 ecology and physiology meet. Journal of Fish Biology 88 (1): 359388.

783 doi:10.1111/jfb.12790

784 785 Eliason, E.J., Clark, T.D., Hague, M.J., Hanson, L.M., Gallagher, Z.S., Jeffries, K.M., Gale,

786 M.K., Patterson, D.A., Hinch, S.G., and Farrell, A.P. 2011. Differences in thermal tolerance

787 among sockeye salmon populations. Science 332 (6025): 109–112.

788

34 https://mc06.manuscriptcentral.com/cjfas-pubs Page 35 of 57 Canadian Journal of Fisheries and Aquatic Sciences

789 English, K.K., Koski, W.R., Sliwinski, C., Blakley, A., Cass, A., and Woodey, J.C. 2005.

790 Migration timing and river survival of laterun Fraser River sockeye salmon estimated using

791 radiotelemetry techniques. Transactions of the American Fisheries Society 134 (5): 1342–

792 1365.

793 794 Farrell, A.P., Gallaugher, C., Clarke, C., DeLury, N., Kreiburg, H., Parkhouse, W., and

795 Routledge, R. 2000. Can. J. Fish. Aquat. Sci. 57: 1668–1678.

796

797 Farrell, A.P., Hinch, S.G., Cooke, S.J., Patterson, D.A., Crossin, G.T., Lapointe, M., and Mathes,

798 M.T. 2008. Pacific salmon in hot water: applying aerobic scope models and biotelemetry to 799 predict the success of spawning migrations.Draft Physiological and Biochemical Zoology 81 (6): 800 697–708.

801 802 Ferrari, M.R., Miller, J.R., and Russell, G.L. 2007. Modeling changes in summer temperature of

803 the Fraser River during the next century. Journal of Hydrology 342 (34): 336–346.

804 805 Fretwell, M.R. 1989. Homing behaviour of adult sockeye salmon in reponse to a hydroelectric

806 diversion of homestream waters at Seton Creek. International Pacific Salmon Fisheries

807 Commission. New Westminster, BC, Canada.

808 809 Gelman, A. 2008. Scaling regression inputs by dividing by two standard deviations. Statistics in

810 Medicine 27 (15): 2865–2873.

811 812 Goniea, T.M., Keefer, M.L., Bjornn, T.C., Peery, C.A., Bennett, D.H., and Stuehrenberg, L.C.

813 2011. Behavioral thermoregulation and slowed migration by adult fall Chinook salmon in

814 response to high Columbia River water temperatures. Transactions of the American Fisheries

35 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 36 of 57

815 Society 135 (2): 408–419.

816 817 Groot, C., Quinn, T.P., and Hara, T.J. 1986. Responses of migrating adult sockeye salmon

818 (Oncorhynchus nerka) to populationspecific odours. Can. J. Zool. 64: 926–932.

819

820 Grueber, C.E., Nakagawa, S., Laws, R.J., and Jamieson, I.G. 2011. Multimodel inference in

821 ecology and evolution: challenges and solutions. Journal of Evolutionary Biology 24 (4):

822 699–711.

823 824 Hansen, L.P., and Jonsson, B. 1994. Homing of Atlantic salmon: effects of juvenile learning on

825 transplanted postspawners. Animal Behaviour 47 (1): 220–222.

826 Draft 827 Hinch, S.G., and Rand, P.S. 1998. Swim speeds and energy use of uprivermigrating sockeye

828 salmon (Oncorhynchus nerka): role of local environment and fish characteristics. Can. J.

829 Fish. Aquat. Sci. 55 (8): 1821–1831.

830 831 Hinch, S.G., and Bratty, J. 2000. Effects of swim speed and activity pattern on success of adult

832 sockeye salmon migration through an area of difficult passage. Transactions of the American

833 Fisheries Society 129 (2): 598–606.

834 835 Hinch, S.G., and Rand, P.S. 2000. Optimal swimming speeds and forwardassisted propulsion:

836 energyconserving behaviours of uprivermigrating adult salmon. Can. J. Fish. Aquat. Sci.

837 57 (12): 2470–2478.

838 839 Hinch, S.G., Cooke, S.J., Healey, M.C., and Farrell, A.P. 2006. Behavioural physiology of fish

840 migrations: salmon as a model approach. In Fish Physiology: 239–295.

36 https://mc06.manuscriptcentral.com/cjfas-pubs Page 37 of 57 Canadian Journal of Fisheries and Aquatic Sciences

841 842 Hinch, S.G., Cooke, S.J., Farrell, A.P., Miller, K.M., Lapointe, M., and Patterson, D.A. 2012.

843 Dead fish swimming: a review of research on the early migration and high premature

844 mortality in adult Fraser River sockeye salmon Oncorhynchus nerka. Journal of Fish

845 Biology 81 (2): 576–599.

846 Hodgson, S., and Quinn, T.P. 2002. The timing of adult sockeye salmon migration into fresh

847 water: adaptations by populations to prevailing thermal regimes. Canadian Journal of

848 Zoology 80 (3): 542–555.

849

850 Irvine, I.A.S., and Sorensen, P.W. 1993. Acute olfactory sensitivity of wild common carp, 851 Cyprinus carpio, to goldfish hormonalDraft sex pheromones is influenced by gonadal maturity. 852 Can. J. Zool. 71: 2199–2210.

853 854 Isaak, D.J., Wollrab, S., Horan, D., and Chandler, G. 2012. Climate change effects on stream and

855 river temperatures across the northwest U.S. from 1980–2009 and implications for salmonid

856 fishes. Climatic Change 113 (2): 499–524.

857 858 Keefer, M.L., Peery, C.A., and Jepson, M.A. 2004a. Upstream migration rates of radio‐tagged

859 adult Chinook salmon in riverine habitats of the Columbia River basin. Journal of Fish

860 Biology 65: 11261141.

861 862 Keefer, M.L., Peery, C.A., Bjornn, T.C., Jepson, M.A., and Stuehrenberg, L.C. 2004b.

863 Hydrosystem, dam, and reservoir passage rates of adult Chinook salmon and steelhead in the

864 Columbia and Snake Rivers. Transactions of the American Fisheries Society 133 (6): 1413–

865 1439.

37 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 38 of 57

866 867 Keefer, M.L., Caudill, C.C., Peery, C.A., and Boggs, C.T. 2008a. Nondirect homing behaviours

868 by adult Chinook salmon in a large, multistock river system. Journal of Fish Biology 72 (1):

869 27–44.

870 871 Keefer, M.L., Peery, C.A., and Heinrich, M.J. 2008b. Temperaturemediated en route migration

872 mortality and travel rates of endangered Snake River sockeye salmon. Ecology of

873 Freshwater Fish 17 (1): 136–145.

874 875 Keefer, M.L., Peery, C.A., and High, B. 2009. Behavioral thermoregulation and associated

876 mortality tradeoffs in migrating adult steelhead (Oncorhynchus mykiss): variability among 877 sympatric populations. Can. J. Fish.Draft Aquat. Sci. 66 (10): 1734–1747. 878 879 Keefer, M.L., and Caudill, C.C. 2014. Homing and straying by anadromous salmonids: a review

880 of mechanisms and rates. Reviews in Fish Biology and Fisheries 24 (1): 333368.

881 882 Kubokawa, K., Watanabe, T., Yoshioka, M., and Iwata, M. 1999. Effects of acute stress on

883 plasma cortisol, sex steroid hormone and glucose levels in male and female sockeye salmon

884 during the breeding season. Aquaculture 172 (34): 335–349.

885 886 Leduc, A.O.H.C., Roh, E., Macnaughton, C.J., Benz, F., Rosenfeld, J., and Brown, G.E. 2010.

887 Ambient pH and the response to chemical alarm cues in juvenile Atlantic salmon:

888 mechanisms of reduced behavioral responses. Transactions of the American Fisheries

889 Society 139 (1): 117–128.

890 891 Lee, C.G., Farrell, A.P., Lotto, A., MacNutt, M.J., Hinch, S.G., and Healy, M.C. 2003. The effect

892 of temperature on swimming performance and oxygen consumption in adult sockeye

38 https://mc06.manuscriptcentral.com/cjfas-pubs Page 39 of 57 Canadian Journal of Fisheries and Aquatic Sciences

893 (Oncorhynchus nerka) and coho (O. kisutch) salmon stocks. Journal of Experimental

894 Biology 206: 3239–3251.

895

896 Leonard, J.B.K., Iwata, M., and Ueda, H. 2002. Seasonal changes of hormones and muscle

897 enzymes in adult lacustrine masu (Oncorhynchus masou) and sockeye salmon (O. nerka).

898 Fish Physio. Biochem 25: 153–163.

899 900 Lundqvist, H., Rivinoja, P., Leonardsson, K., and McKinnell, S. 2008. Upstream passage

901 problems for wild Atlantic salmon (Salmo salar L.) in a regulated river and its effect on the

902 population. Hydrobiologia 602 (1): 111–127.

903 904 Macdonald, J.S., Morrison, J., Patterson,Draft D.A., and Heinonen, J. 2007. Examination of factors

905 influencing Nechako River discharge, temperature, and aquatic habitats. Canadian Technical

906 Report of Fisheries and Aquatic Sciences 2773.

907 908 Martins, E.G., Hinch, S.G., Patterson, D.A., Hague, M.J., Cooke, S.J., Miller, K.M., Robichaud,

909 D., English, K.K., and Farrell, A.P. 2012. High river temperature reduces survival of

910 sockeye salmon (Oncorhynchus nerka) approaching spawning grounds and exacerbates

911 female mortality. Can. J. Fish. Aquat. Sci. 69 (2): 330342.

912 913 Mathes, M.T., Hinch, S.G., Cooke, S.J., Crossin, G.T., Patterson, D.A., Lotto, A.G., and Farrell,

914 A.P. 2010. Effect of water temperature, timing, physiological condition, and lake thermal

915 refugia on migrating adult Weaver Creek sockeye salmon (Oncorhynchus nerka). Can. J.

916 Fish. Aquat. Sci. 67 (1): 70–84.

917

39 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 40 of 57

918 Milligan, C.L. 1996. Metabolic recovery from exhaustive exercise in rainbow trout. Comp.

919 Biochem. Physiol. 113A (1): 51–60.

920 921 Murchie, K.J., Hair, K.P.E., Pullen, C.E., Redpath, T.D., Stephens, H.R., and Cooke, S.J. 2008.

922 Fish response to modified flow regimes in regulated rivers: research methods, effects and

923 opportunities. River Research and Applications 24 (2): 197–217.

924 925 Naughton, G.P., Caudill, C.C., Keefer, M.L., Bjornn, T.C., Stuehrenberg, L.C., and Peery, C.A.

926 2005. Lateseason mortality during migration of radiotagged adult sockeye salmon

927 (Oncorhynchus nerka) in the Columbia River. Can. J. Fish. Aquat. Sci. 62 (1): 30–47.

928 929 Nevitt, G., and Dittman, A. 1998. A newDraft model for olfactory imprinting in salmon. Integrative 930 Biology Issues News and Reviews 1 (6): 215223.

931 932 Newell, J.C., and Quinn, T.P. 2005. Behavioral thermoregulation by maturing adult sockeye

933 salmon (Oncorhynchus nerka) in a stratified lake prior to spawning. Canadian Journal of

934 Zoology 83 (9): 1232–1239.

935 936 O'Hara, R.B., and Kotze, D.J. 2010. Do not logtransform count data. Methods in Ecology and

937 Evolution 1 (2): 118–122.

938 939 Patterson, D.A., Macdonald, J.S., Skibo, K.M., Barnes, D.P., Guthrie, I., and Hills, J. 2007.

940 Reconstructing the summer thermal history for the lower Fraser River, 1941 to 2006, and

941 implications for adult sockeye salmon. Canadian Technical Report of Fisheries and Aquatic

942 Sciences 2724. 43p.

943 944 Quinn, T.P. 2005. The behaviour and ecology of Pacific salmon and trout. University Press,

40 https://mc06.manuscriptcentral.com/cjfas-pubs Page 41 of 57 Canadian Journal of Fisheries and Aquatic Sciences

945 Seattle, WA. 320p.

946 947 Quinn, T.P., and Adams, D.J. 1996. Environmental changes affecting the migratory timing of 948 American shad and sockeye salmon. Ecology 77 (4): 1151–1162. 949 950

951 Quinn, T.P., Hodgson, S., and Peven, C. 1997. Temperature, flow, and the migration of adult

952 sockeye salmon (Oncorhynchus nerka) in the Columbia River. Can. J. Fish. Aquat. Sci. 54

953 (6): 13491360.

954 955 Ramstad, K.M., and Woody, C.A. 2003. Radio tag retention and tagrelated mortality among

956 adult sockeye salmon. North American Journal of Fisheries Management 23 (3): 978–982.

957 958 Rand, P.S., Hinch, S.G., Morrison, J., Foreman,Draft M.G.G., MacNutt, M.J., Macdonald, J.S.,

959 Healey, M.C., Farrell, A.P., and Higgs, D.A. 2006. Effects of river discharge, temperature,

960 and future climates on energetics and mortality of adult migrating Fraser River sockeye

961 salmon. Transactions of the American Fisheries Society 135 (3): 655–667.

962 963 Robards, M.D., and Quinn, T.P. 2011. The migratory timing of adult summerrun steelhead in

964 the Columbia River over six decades of environmental change. Transactions of the American

965 Fisheries Society 131 (3): 523536.

966 967 Roscoe, D.W., Hinch, S.G., Cooke, S.J., and Patterson, D.A. 2010a. Behaviour and thermal

968 experience of adult sockeye salmon migrating through stratified lakes near spawning

969 grounds: the roles of reproductive and energetic states. Ecology of Freshwater Fish 19 (1):

970 51–62.

971 972 Roscoe, D.W., Hinch, S.G., Cooke, S.J., and Patterson, D.A. 2010b. Fishway passage and post

41 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 42 of 57

973 passage mortality of upriver migrating sockeye salmon in the Seton River, British

974 Columbia. River Research and Applications 27 (6): 693–705.

975 976 Sandblom, E., Clark, T.D., Hinch, S.G., and Farrell, A.P. 2009. Sexspecific differences in

977 cardiac control and hematology of sockeye salmon (Oncorhynchus nerka) approaching their

978 spawning grounds. American Journal of Physiology Regulatory, Integrative and

979 Comparative Physiology 297 (4): R1136–R1143.

980 981 Sato, A., Ueda, H., Fukaya, M., Kaeriyama, M., Zohar, Y., Urano, A., and Yamauchi, K. 1997.

982 Sexual differences in homing profiles and shortening of homing duration by gonadotropin

983 releasing hormone analog implantation in lacustrine sockeye salmon (Oncorhynchus nerka)

984 in Lake Shikotsu. Zoological ScienceDraft 14: 1009–1014.

985 986 Schielzeth, H. 2010. Simple means to improve the interpretability of regression coefficients.

987 Methods in Ecology and Evolution 1 (2): 103–113.

988 989 Thorstad, E.B., Okland, F., Johnsen, B.O., and Næsje, T.F. 2003a. Return migration of adult

990 Atlantic salmon, Salmo salar, in relation to water diverted through a power station. Fisheries

991 Management and Ecology 10 (1): 13–22.

992 993 Thorstad, E.B., Okland, F., Kroglund, F., and Jepsen, N. 2003b. Upstream migration of Atlantic

994 salmon at a power station on the River Nidelva, Southern Norway. Fisheries Management

995 and Ecology 10 (3): 139–146.

996 997 Thorstad, E.B., Okland, F., Aarestrup, K., and Heggberget, T.G. 2008. Factors affecting the

998 withinriver spawning migration of Atlantic salmon, with emphasis on human impacts.

42 https://mc06.manuscriptcentral.com/cjfas-pubs Page 43 of 57 Canadian Journal of Fisheries and Aquatic Sciences

999 Reviews in Fish Biology and Fisheries 18 (4): 345–371.

1000 1001 Truscott, B., Idler, D.R., So, Y.P., and Walsh, J.M. 1986. Maturational steroids and gonadotropin

1002 in upstream migratory sockeyesalmon. General and Comparative Endocrinology 62 (1): 99–

1003 110.

1004 1005 Ueda, H. 2011. Physiological mechanism of homing migration in Pacific salmon from behavioral

1006 to molecular biological approaches. General and Comparative Endocrinology 170 (2): 222–

1007 232.

1008 1009 Vrieze, L.A., Bergstedt, R.A., and Sorensen, P.W. 2011. Olfactorymediated streamfinding 1010 behavior of migratory adult sea lampreyDraft (Petromyzon marinus). Can. J. Fish. Aquat. Sci. 68 1011 (3): 523–533.

1012 1013 Waples, R.S., Zabel, R.W., Scheeuerell, M.D., and Sanderson, B.L. 2008. Evolutionary

1014 responses by native species to major anthropogenic changes to their ecosystems: Pacific

1015 salmon in the Columbia River hydropower system. Molecular Ecology 17 (1): 84–96.

1016 1017 Zuur, A.F., Ieno, E.N., and Elphick, C.S. 2010. A protocol for data exploration to avoid

1018 common statistical problems. Methods in Ecology and Evolution 1 (1): 3–14

43 https://mc06.manuscriptcentral.com/cjfas-pubs Page 44 of 57 ) for female (♀) and and (♀) for female ) 1 2014 2014 5.0 ± 0.8 ± 0.8 5.0 3.8 ± 1.5 ± 1.5 3.8 4.6 ± 1.0 ± 1.0 4.6 2.8 ± 1.1 ± 1.1 2.8 61.6 ± 2.9 ± 2.9 61.6 58.3 ± 2.3 ± 2.3 58.3 (1.5 – 8.5) 8.5) – (1.5 (1.1 – 4.7) 4.7) – (1.1 (3.7 – 8.0) – (3.7 (2.6 – 7.5) – (2.6 = 41 (♀) 41 = n (♂) 30 = n (51.5 – 67) – (51.5 (5.7 – 42.9) – (5.7 138.4 ± 73.3 ± 73.3 138.4 16.57 ± 10.0 ± 10.0 16.57 (49.5 – 62.5) – (49.5 (13.3 – 306.8) – (13.3 Portage Creek Portage 2013 2013 3.7 ± 1.0 ± 1.0 3.7 4.7 ± 2.1 ± 2.1 4.7 4.1 ± 1.1 ± 1.1 4.1 2.6 ± 1.5 ± 1.5 2.6 (55 – 61) – (55 (54 – 60) – (54 = 6 (♂) 6 = n 57.8 ± 1.9 ± 1.9 57.8 56.3 ± 1.9 ± 1.9 56.3 (2.2 – 5.3) – (2.2 (2.2 – 8.4) – (2.2 (2.5 – 7.0) – (2.5 (0.9 – 4.7) – (0.9 = 13 (♀) 13 = n 88.3 ± 66.7 ± 66.7 88.3 ), and testosterone (ng ml (ng testosterone and ), 148.8 ± 108.9 ± 108.9 148.8 (18.3 – 365.2) – (18.3 (33.5 – 216.2) – (33.5 1 2014 2014 5.4 ± 1.4 ± 1.4 5.4 4.5 ± 0.8 ± 0.8 4.5 ± 2.5 5.0 3.7 ± 1.9 ± 1.9 3.7 (53 – 69) 69) – (53 (51 – 63) – (51 61.9 ± 4.0 ± 4.0 61.9 8.0 ± 6.63 ± 6.63 8.0 57.4 ± 4.0 ± 4.0 57.4 = 83 (♀) 83 = n (♂) 62 = n (3.0 – 9.3) – (3.0 (1.2 – 31.1) – (1.2 (1.4 – 11.0) – (1.4 (0.7 – 10.0) – (0.7 (2.5 – 10.1) – (2.5 53.32 ± 56.5 ± 56.5 53.32 ), lactate), (mmol L (2.1 – 385.6) – (2.1 1

Gates Creek Creek Gates Draft 2013 2013 5.6 ± 1.5 ± 1.5 5.6 5.5 ± 1.3 ± 1.3 5.5 ± 3.7 5.5 3.6 ± 2.3 ± 2.3 3.6 60.0 ± 3.1 ± 3.1 60.0 56.6 ± 3.0 ± 3.0 56.6 = 63 (♀) 63 = n (♂) 48 = n (52 – 67.5) 67.5) – (52 (49 – 65.5) 65.5) – (49 16.7 ± 17.7 ± 17.7 16.7 82.0 ± 97.4 ± 97.4 82.0 (0.9 – 83.6) – (0.9 (2.9 – 10.2) – (2.9 16.1) – (0.9 (0.8 – 10.2) – (0.8 (4.2 – 13.7) – (4.2 (1.1 – 398.1) – (1.1 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences ♂ ♂ ♂ ♂ ♂ ♂ ♀ ♀ ♀ ♀ ♀ ♂ ♂ ♀ ♀

) ) 1 1 ) 1 Lactate Lactate (mmol L Glucose Glucose (mmol L length Fork (cm) Testosterone Testosterone ml (ng male (♂) Gates Creek and Portage Creek sockeye salmon. *Note, preliminary analyses of physiological variables from the three three the from physiological variables of analyses preliminary *Note, sockeye salmon. Creek and Creek Portage Gates (♂) male example. an as 3 used in Model data the reports this table values; similar 3 and 2, 1, Models yielded behavioural in used datasets Table 1. Mean ± SD (range) of fork length (cm), glucose (mmol (mmol L glucose (cm), fork length of (range) ± SD Mean 1. Table

2

adjR i

w

c

AIC c

log Lik log AIC 420.30 420.30 850.85 1.91 0.01 420.87 420.87 849.91 0.97 0.02 419.84 419.84 849.91 0.97 0.02 420.35 420.35 850.94 420.35 1.99 850.94 1.99 0.01 0.01 420.22 420.22 850.68 1.73 0.01 420.35 420.35 850.94 1.99 0.01 204.36 204.36 421.73 0.00 0.06 420.35 420.35 850.94 1.99 0.01

421.42 421.42 848.94 420.67 0.00 849.50 420.68 0.56 849.52 422.82 0.03 0.57 849.69 421.80 0.02 0.74 849.70 420.84 0.02 0.75 849.84 421.90 0.02 0.89 849.90 0.02 0.96 0.02 420.89 0.02 849.94 422.12 1.00 850.33 421.18 1.39 850.52 0.02 1.57 0.01 0.01

Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences

Glucose + FRT + Tdiff + + FRT Glucose Tdiff + + FRT Glucose PHT + + FRT Glucose + PHT Tdiff + Glucose Glucose + PHT + Glucose +Tdiff Glucose Intercept Tdiff PHT + Testosterone Testosterone testosterone + Glucose + PHT testosterone + Glucose NW + Glucose PHT Tdiff + Testosterone Tdiff +NW + Glucose Tdiff Testosterone + + Glucose Glucose Glucose

the powerhouse, (2) the amount of wandering in the Fraser River between the release site and the SetonFraser River confluence, and and River confluence, SetonFraser the and site release the Riverbetween in theFraser the amount wandering (2) of powerhouse, the Creek Portage (GC) and Creek for Gates tailrace powerhouse in the individuals by delay incurred migration of amount total the (3) salmon. sockeye (PC) Table 2. AICc model selection statistics for generalized linear models and linear models predicting (1) the number of into forays number made the (1) predicting models and linear models generalized linear for statistics selection model AICc 2. Table

=255) N model and variable Response

GC ( forays Powerhouse (1) PC NW Tdiff + + PHT + TD Page 45 of 57 Page 46 of 57

73.94 73.94 161.07 1.00 0.02 141.95 141.95 296.27 1.83 0.02 142.01 142.01 296.40 142.01 1.95 296.40 1.95 0.02 0.02 142.01 142.01 296.40 1.95 0.02 73.44 73.44 160.07 0.00 0.03 142.01 142.01 296.40 1.95 0.02 204.99 204.99 422.99 1.26 0.03 203.78 203.78 422.93 1.20 0.04 205.27 205.27 423.55 1.82 0.03 205.65 205.65 422.02 0.29 0.06 204.08 204.08 423.52 1.79 0.03 205.14 205.14 423.29 1.56 0.03 204.17 204.17 423.70 1.97 0.02 205.20 205.20 423.40 1.67 0.03 206.02 206.02 422.75 1.02 0.04

206.68 206.68 421.84 205.56 0.11 421.84 0.11 206.00 0.06 422.72 0.06 0.99 0.04 142.09 142.09 294.44 0.00 144.06 296.29 0.05 1.84 0.02 74.72 74.72 75.96 160.28 0.21 160.47 0.40 0.03 0.03

Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences PHT + Tdiff + NW + Tdiff + PHT PHT NW + + Testosterone NW + Sex PHT + + PHT NW + Glucose Testosterone + PHT + Tdiff + NW PHT Tdiff + + + Testosterone +NW + PHT Tdiff + Glucose NW + Tdiff + Sex PHT + NW + + PHT TD Tdiff + + Glucose NW + PHT Testosterone + + Glucose NW Tdiff + + PHT + Sex TD + Testosterone + TD + PHT + Tdiff + + NW PHT TD Tdiff + + + Testosterone

Sex + Lactate + Testosterone + PHT + Testosterone + Sex + Lactate PHT+ Lactate PHT + + FRT Sex + Lactate Sex + Lactate + PHT + Sex + Lactate Sex + Lactate + FRT + NW + + FRT Sex + Lactate + NW FRT + Lactate NW + FRT NW + + FRT Testosterone + Lactate Sex + Lactate + PHT + Tdiff + PHT + Sex + Lactate Tdiff + + FRT Sex + Lactate Tdiff + + FRT Sex + Lactate

=235) =235) =90) =90) NW + PHT =78) N N N

GC ( ( Wandering (2) PC (

72.91 72.91 161.42 1.35 0.02 72.91 72.91 161.42 1.35 0.02 74.31 74.31 74.31 161.81 1.74 161.81 1.74 0.01 0.01 72.91 72.91 161.42 1.35 0.02 74.31 74.31 161.81 1.74 0.01 480.02 480.02 972.38 0.03 0.03 0.06 72.91 72.91 161.42 1.35 0.02 74.32 74.32 161.83 1.77 0.01 74.31 74.31 161.81 1.74 0.01 481.06 481.06 972.35 0.00 0.03 0.05 481.68 481.68 973.60 1.24 0.02 0.04

76.34 76.34 77.52 161.22 1.15 161.36 1.29 0.02 0.02 76.65 75.52 161.85 1.78 75.59 161.86 1.80 75.59 162.02 0.01 1.95 75.59 162.02 0.01 1.95 75.59 162.02 0.01 1.95 76.75 162.02 0.01 1.95 162.04 0.01 1.98 0.01 0.01 482.40 482.40 972.97 482.49 0.61 973.13 482.49 0.78 973.14 0.02 0.79 0.02 0.04 0.02 0.04 0.04

Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences

Lactate Lactate NW Tdiff + + + FRT Sex + Lactate NW Tdiff + + + FRT Sex + Lactate NW + PHT + + FRT Sex + Lactate NW Tdiff + + PHT + Sex + Lactate + NW + Tdiff FRT + Lactate + NW + Tdiff FRT + Lactate PHT + + NW FRT + Lactate Tdiff + NW + PHT + Lactate + PHT NW + Sex + Lactate Sex + Lactate NW + Sex FRT + NW Tdiff + + FRT NW Tdiff + + FRT NW + PHT + FRT NW + Tdiff + PHT PHT+ Lactate Lactate FRT + Lactate Glucose + Testosterone + Tdiff + + NW Tdiff Testosterone + + Glucose Tdiff + Glucose NW + Glucose PHT + Glucose + PHT NW + Glucose Glucose + Tdiff + NW Tdiff + + Glucose =256) =256) N

GC GC ( delay Powerhouse (3) Page 47 of 57 Page 48 of 57

is an is an 2

480.87 480.87 974.07 1.72 0.01 0.05 482.02 482.02 974.28 1.92 0.01 0.04 161.87 161.87 336.75 1.98 0.03 0.25 481.69 481.69 973.62 1.27 0.02 0.04 481.77 481.77 973.79 1.44 0.02 0.04 161.83 161.83 336.67 1.90 0.03 0.25 481.79 481.79 973.82 1.46 481.79 0.02 973.82 0.04 1.46 0.02 0.04 480.86 480.86 974.05 1.70 480.86 0.01 974.05 0.05 1.70 0.01 0.05 480.95 480.95 974.24 1.88 0.01 0.05 160.46 160.46 336.29 1.53 0.03 0.27 481.79 481.79 973.82 1.46 0.02 0.04 480.86 480.86 974.05 1.70 0.01 0.05 161.20 161.20 335.41 0.65 0.05 0.26 161.53 161.53 336.07 1.30 0.04 0.25 481.79 481.79 973.82 1.46 0.02 0.04 480.86 480.86 974.05 1.70 0.01 0.05 162.08 162.08 334.88 0.12 0.06 0.24

484.01 484.01 974.12 1.77 0.01 0.03 163.15 163.15 334.76 0.00 162.56 0.07 335.83 0.23 1.07 0.04 0.24

Draft and the top model in the candidate set. Models are ranked ranked from set. are Models candidate in the top model the and i https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences – the probability that a given model is the best in the 95% confidence set. adjR set. confidence 95% the in best is the model a that given probability the – i values between model between model values c , and by , w by and c

Glucose + Testosterone NW Testosterone + + Glucose Tdiff + + FRT Glucose PHT + + FRT Glucose + PHT Tdiff + Glucose Tdiff + + FRT Glucose Tdiff + NW + + FRT Glucose + PHT NW + + FRT Glucose +NW + PHT Tdiff + Glucose Tdiff + NW + + FRT Glucose NW Tdiff + + + Lactate Glucose Glucose + Testosterone Tdiff Testosterone + + Glucose Glucose Glucose NW Tdiff + + Glucose NW + + Lactate Glucose PHT + NW + PHT Glucose NW + + PHT Tdiff + TD NW + + PHT TDNW + + PHT + TD Glucose NW + + PHT Tdiff + + TD Glucose NW + + PHT + Testosterone Glucose NW + + PHT + Lactate Glucose NW + + PHT is the difference in AIC difference is the c =90) =90) N estimate of the proportion of variance explained by each model, adjusted by the number of explanatory variables; this is only variables; explanatory of number the by model, each adjusted by explained variance proportion of the of estimate Abbreviations Methods). (see tests Chisquare by evaluated model were fits linear models generalized as linear for shown lowest to highest AIC to highest lowest

Portage Portage ( AIC

Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences used for model variables include: Fraser River temperature (FRT), powerhouse temperature (PHT), temperature differential differential temperature (PHT), temperature powerhouse (FRT), temperature River Fraser variables include: model for used temperature. River Fraser for substituted date was tagging that to indicate parentheses in FRT with is PC, shown the TD between the Fraser River and powerhouse (Tdiff), natal water concentration (NW), and tagging date (TD). In Model 3 for Model for 3 In date (TD). tagging and (NW), concentration water (Tdiff), natal powerhouse River and the Fraser between Page 49 of 57 Page 50 of 57 d ) sockeye salmon a ) and Portage – Model-averaged panel a ), and natal water Panels c & d c ) and Portage Creek (

Draft ) in 2013 (grey) and 2014 (black). Shaded grey boxes represent the periods in panel b ) in 2013 (grey) and 2014 (black). Shaded grey boxes represent https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences b , 1 female that made 24 forays was removed from the histogram for clarity. – Histograms of the number of forays female (grey bars) and male (black Gates Creek ( Panels a & b – Histograms of the number Fig. 1. Study area in the Seton-Anderson watershed in southwestern British Columbia, Canada (inset). Capture, release and fixed Canada (inset). Capture, Fig. 1. Study area in the Seton-Anderson watershed southwestern British Columbia, The location of the legend and map. Seton monitoring locations, are indicated by the radio-telemetry stations, along with temperature water given relative flow Fraser River, as is the extent of Seton River plume that fluctuates in its concentration natal of Cayoosh Creek. contributions ( Fig. 2. Mean daily Fraser River (solid lines) and powerhouse tailrace (dashed temperatures which fish from each population were tagged. Dashed red lines represent the current natal water concentration targets for Gates Creek the current natal water which fish from each population were tagged. Dashed red lines represent population proportional(80%) and Portage Creek (90%) sockeye salmon, are approximately to the migration timing of each through the hydrosystem. Fig. 3. concentration of the Seton River and its plume ( ) sockeye salmon made into the powerhouse as a proportion of all the individuals included in models predicting this Creek ( b ) sockeye salmon made into the powerhouse as a proportion of all individuals included in models made into the Seton powerhouse. Coefficient estimates with 95% confidence intervals that do not cross zero are highlighted by solid made into the Seton powerhouse. Coefficient estimates with 95% confidence intervals that do not cross standardized coefficient estimates for models predicting the number of forays Gates Creek ( powerhouse tailrace and the visible extent of the powerhouse discharge plume of natal Seton Lake water is shown extending into the extent of the powerhouse discharge plume natal Seton Lake powerhouse tailrace and the visible behaviour. In panel black circles. Vertical dashed line indicates the coefficient value of zero. Abbreviations for predictor variables include: Fraser River for predictor variables black circles. Vertical dashed line indicates the coefficient value of zero. Abbreviations c ) b ) b ) and Portage Creek ( a ) and Portage Creek ( – Model-averaged standardized d ) sockeye salmon. Coefficient – Model-averaged standardized Panel b & c Panels c & d c ) and Portage Creek (

Draft d only). Note the difference in x-axis scales between panels. https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences – Beanplots of total migration delay in the powerhouse tailrace for female (black beans) and male (grey beans) Gates Panel a – Beanplots of total migration delay in the powerhouse tailrace for female (black beans) – Histograms of wandering (the number of back-and-forth movements) in the Fraser River between the release of back-and-forth movements) in the Fraser River between release Panels a & b – Histograms of wandering (the number coefficient estimates from models predicting the total amount of migration delay incurred by Gates Creek ( coefficient estimates from models predicting the total amount of migration delay incurred by Gates Creek and Portage Creek sockeye salmon used in models predicting this behaviour. Shaded polygons represent the distribution of the distribution Creek and Portage sockeye salmon used in models predicting this behaviour. Shaded polygons represent means. individual delay times (small horizontal lines) and bold lines represent estimates with 95% confidence intervals that do not include zero are highlighted by solid black circles. Vertical dashed line indicates estimates with 95% confidence intervals that do not include zero are highlighted by solid black circles. (FRT), powerhouse temperature the coefficient value of zero. Abbreviations for predictor include: Fraser River temperature variables concentration (NW). Note the differential between the Fraser River and powerhouse (Tdiff), natal water (PHT), temperature difference in x-axis scales between panels. Fig. 5. coefficient estimates for models predicting wandering Gates Creek ( temperature (FRT), powerhouse temperature (PHT), temperature differential between the Fraser River and powerhouse (Tdiff), differential between the (PHT), temperature (FRT), powerhouse temperature temperature date was substituted for Fraser River natal water concentration (NW). FRT is shown with TD in parentheses to indicate that tagging in the Portage Creek foray model (panel temperature Fig. 4. Creek ( site and the Seton-Fraser River confluence for female (grey bars) male (black Gates sockeye salmon shown as a proportion of all individuals included in the models predicting this behaviour for each population. In panel sockeye salmon shown as a proportion of all individuals included in the models predicting this behaviour a , 1 female that wandered 9 times was removed from the histogram for clarity. Page 51 of 57 Page 52 of 57 c only). Note the difference in x-axis scales between

Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences ! ! sockeye salmon in the powerhouse tailrace. Coefficient estimates with 95% confidence intervals that do not include zero are sockeye salmon in the powerhouse tailrace. Coefficient estimates with 95% confidence intervals of zero. Abbreviations for model variables highlighted by solid black circles. Vertical dashed line indicates the coefficient value between the Fraser River and differential (PHT), temperature (FRT), powerhouse temperature include: Fraser River temperature in the Portage Creek delay model (panel substituted for Fraser River Temperature panels. powerhouse (Tdiff), and natal water concentration (NW). FRT is shown with TD in parentheses to indicate that tagging date was powerhouse (Tdiff), and natal water concentration (NW). FRT is shown with TD in parentheses to indicate ! ":+;/:!&3@/:! ! !!!!!!!!!!!!!!!!!!!!! xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx xxxxxxxxx !!!!!!!!!!!!!!!!!!!!! !

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Draft https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences (d) (b) ! ! ! ! ! ! 0.3 0.1 ! ! 0.7 ! ! ! 1.1 1 3 5 7 9 11 13 15 17 (c) (a) Powerhouse forays Powerhouse ! ! Draft coefficients Standardized ! ! ! ! https://mc06.manuscriptcentral.com/cjfas-pubs ! Canadian Journal of Fisheries and Aquatic Sciences ! ! 0.16 0.04 0.19 1 3 5 7 9 11 13 15 17

0.6 0.5 0.4 0.3 0.2 0.1 0.0 NW Sex Proportion Tdiff PHT Lactate Glucose FRT (TD) FRT Testosterone Figure 3 Page 55 of 57 Page 56 of 57

(b) (d)

! ! !

! ! ! ! 1.0 0.2 ! ! ! 2.2 0 1 2 3 4 5 (c) (a) Draft Wandering events Wandering ! Standardized coefficients Standardized ! https://mc06.manuscriptcentral.com/cjfas-pubs ! Canadian Journal of Fisheries and Aquatic Sciences ! ! ! 0.2 0.4 1.0 ! ! ! ! 0.8 0 1 2 3 4 5

0.8 0.6 0.4 0.2 0.0 NW Sex Proportion FRT Tdiff PHT Lactate Glucose

Testosterone Wandering

Figure 4

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NW Sex Tdiff Powerhouse delay (hrs) delay Powerhouse PHT Lactate Glucose FRT (TD) FRT Testosterone Figure 5 Page 57 of