Caribbean Shallow Water Corallimorpharia
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Unfolding the Secrets of Coral–Algal Symbiosis
The ISME Journal (2015) 9, 844–856 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Unfolding the secrets of coral–algal symbiosis Nedeljka Rosic1, Edmund Yew Siang Ling2, Chon-Kit Kenneth Chan3, Hong Ching Lee4, Paulina Kaniewska1,5,DavidEdwards3,6,7,SophieDove1,8 and Ove Hoegh-Guldberg1,8,9 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia; 2University of Queensland Centre for Clinical Research, The University of Queensland, Herston, Queensland, Australia; 3School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Queensland, Australia; 4The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, New South Wales, Australia; 5Australian Institute of Marine Science, Townsville, Queensland, Australia; 6School of Plant Biology, University of Western Australia, Perth, Western Australia, Australia; 7Australian Centre for Plant Functional Genomics, The University of Queensland, St Lucia, Queensland, Australia; 8ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia and 9Global Change Institute and ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia Dinoflagellates from the genus Symbiodinium form a mutualistic symbiotic relationship with reef- building corals. Here we applied massively parallel Illumina sequencing to assess genetic similarity and diversity among four phylogenetically diverse dinoflagellate clades (A, B, C and D) that are commonly associated with corals. We obtained more than 30 000 predicted genes for each Symbiodinium clade, with a majority of the aligned transcripts corresponding to sequence data sets of symbiotic dinoflagellates and o2% of sequences having bacterial or other foreign origin. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Symbiodinium Diversity and Potential Hybridisation on the Highly Biodiverse Coral Reefs of Timor-Leste
Symbiodinium diversity and potential hybridisation on the highly biodiverse coral reefs of Timor-Leste Joshua Ian Brian A thesis submitted to the Victoria University of Wellington in partial fulfilment of the requirements for the degree of Master of Science in Marine Biology Victoria University of Wellington, New Zealand 2018 Atauro Island, Timor-Leste ii Abstract To persist in oligotrophic waters, reef-building corals rely on nutritional interactions with their intracellular symbionts: photosynthetic dinoflagellates of the genus Symbiodinium. This relationship is threatened by increasing environmental stress, which can stimulate loss of these symbionts from coral tissues (‘coral bleaching’). Members of the genus Symbiodinium display high levels of genetic diversity, and demonstrate a corresponding diversity in physiological responses to environmental change. However, the true diversity and potential for genetic adaptation in this genus remain poorly characterised. This thesis aimed to further the understanding of symbiont diversity and adaptive potential by conducting assessments of Symbiodinium at Atauro Island and the neighbouring Timor-Leste mainland. These sites have previously been shown to be of outstanding conservation value, with extremely high levels of coral diversity. Atauro Island also possibly hosts the highest diversity of reef fish in the world. However, the Symbiodinium communities at these sites have never been assessed. Two specific objectives were therefore addressed here. The first was to measure Symbiodinium diversity at Atauro Island (four sites) and Timor (three sites), using direct sequencing of three gene regions: cob gene, mitochondrion; ITS2 region, nucleus; and psbAncr region, chloroplast; in addition to Next Generation Sequencing of the ITS2 region. The second objective was to establish evidence for Symbiodinium hybridisation, a potentially rapid evolutionary mechanism that may facilitate adaptation to environmental stress, by looking for genetic incongruences between Symbiodinium organelles. -
Updated Classification of Benthic Marine Habitat Types for The
Updated Classification of Benthic Marine Habitat Types for the Mediterranean Region TUNISIA - 2019 Legal notice: The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of the Specially Protected Areas Regional Activity Centre (SPA/RAC) and UN Environment/Mediterranean Action Plan (MAP) and those of the Lebanese Ministry of Environment concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. This publication was produced with the fi nancial support of the European Union in the framework of the MedMPA Network Project. Its contents are the sole responsibility of SPA/RAC and do not necessarily refl ect the views of the European Union. Copyright : All property rights of texts and content of different types of this publication belong to SPA/RAC. Reproduction of these texts and contents, in whole or in part, and in any form, is prohibited without prior written permission from SPA/RAC, except for educational and other non-commercial purposes, provided that the source is fully acknowledged. © 2019 - United Nations Environment Programme Mediterranean Action Plan Specially Protected Areas Regional Activity Centre (SPA/RAC) Boulevard du Leader Yasser Arafat B.P. 337 1080 Tunis Cedex - Tunisia. [email protected] For bibliographic purposes, this document may be cited as: SPA/RAC–UN Environment/MAP, 2019: Updated Classifi cation of Benthic Marine Habitat Types for the Mediterranean Region Layout : Atef OUERGHI Cover photos credit: © SPA/RAC, University of Seville, University of Alicante, Trainito E. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Patterns of Septal Biomineralization in Scleractinia Compared with Their 28S Rrna Phylogeny
PBlackwell Publishingatterns Ltd. of septal biomineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework JEAN-PIERRE CUIF, GUILLAUME LECOINTRE, CHRISTINE PERRIN, ANNIE TILLIER & SIMON TILLIER Accepted: 2 December 2002 Cuif, J.-P., Lecointre, G., Perrin, C., Tillier, A. & Tillier, S. (2003). Patterns of septal bio- mineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework. — Zoologica Scripta, 32, 459–473. A molecular phylogeny of the Scleractinia is reconstructed from approximately 700 nucleo- tides of the 5′end of the 28S rDNA obtained from 40 species. A comparison of molecular phylogenic trees with biomineralization patterns of coral septa suggests that at least five clades are corroborated by both types of data. Agaricidae and Dendrophylliidae are found to be monophyletic, that is supported by microstructural data. Conversely, Faviidae and Caryophyl- liidae are found to be paraphyletic: Cladocora should be excluded from the faviids, whereas Eusmilia should be excluded from the caryophylliids. The conclusion is also supported by the positions, sizes and shapes of centres of calcification. The traditional Guyniidae are diphyletic, corroborating Stolarski’s hypothesis ‘A’. Some results from our most parsimonious trees are not strongly statistically supported but corroborated by other molecular studies and micro- structural observations. For example, in the scleractinian phylogenetic tree, there are several lines of evidence (including those from our data) to distinguish a Faviidae–Mussidae lineage and a Dendrophylliidae–Agaricidae–Poritidae–Siderastreidae lineage. From a methodological standpoint, our results suggest that co-ordinated studies creating links between biomineralization patterns and molecular phylogeny may provide an efficient working approach for a re- examination of scleractinian classification. -
Abundance and Clonal Replication in the Tropical Corallimorpharian Rhodactis Rhodostoma
Invertebrate Biology 119(4): 351-360. 0 2000 American Microscopical Society, Inc. Abundance and clonal replication in the tropical corallimorpharian Rhodactis rhodostoma Nanette E. Chadwick-Furmana and Michael Spiegel Interuniversity Institute for Marine Science, PO. Box 469, Eilat, Israel, and Faculty of Life Sciences, Bar Ilan University, Ramat Gan, Israel Abstract. The corallimorpharian Rhodactis rhodostoma appears to be an opportunistic species capable of rapidly monopolizing patches of unoccupied shallow substrate on tropical reefs. On a fringing coral reef at Eilat, Israel, northern Red Sea, we examined patterns of abundance and clonal replication in R. rhodostoma in order to understand the modes and rates of spread of polyps across the reef flat. Polyps were abundant on the inner reef flat (maximum 1510 polyps m-* and 69% cover), rare on the outer reef flat, and completely absent on the outer reef slope at >3 m depth. Individuals cloned throughout the year via 3 distinct modes: longitudinal fission, inverse budding, and marginal budding. Marginal budding is a replicative mode not previously described. Cloning mode varied significantly with polyp size. Approximately 9% of polyps cloned each month, leading to a clonal doubling time of about 1 year. The rate of cloning varied seasonally and depended on day length and seawater temperature, except for a brief reduction in cloning during midsummer when polyps spawned gametes. Polyps of R. rhodo- stoma appear to have replicated extensively following a catastrophic low-tide disturbance in 1970, and have become an alternate dominant to stony corals on parts of the reef flat. Additional key words: Cnidaria, coral reef, sea anemone, asexual reproduction, Red Sea Soft-bodied benthic cnidarians such as sea anemo- & Chadwick-Furman 1999a). -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
Ibdiocc- Scor Wg
PROPOSAL FOR IBDIOCC- SCOR WG Submitted to: Dr. Edward Urban, Executive Secretary, Scientific Committee for Oceanic Research (SCOR) Submitted by: Dr. Robert Y. George, President, George Institute for Biodiversity and Sustainability (GIBS), 1320 Vanagrif Ct., Wake Forest, North Carolina. Date of Submission: April 15, 2016. IBDIOCC Interaction Between Drivers Impacting Ocean Carbonate Chemistry: How can Deep-Sea Coral Ecosystems respond to ASH/CSH Shoaling in Seamounts that pose imminent threats from Ocean Acidification? Summary/Abstract: We propose a new SCOR Working Group IBDIOCC (2017 to 2019) that seeks to assess new impacts on seamount ecosystems from ocean acidification (OA), that essentially looks at the impact of shoaling of ASH and CSH on the biota that include communities/species associated with deep sea scleractinian corals e.g. Lophelia pertusa and Solenosmilia variabilis) The WG, with members from both southern and northern hemispheres, seeks to re-evaluate and augment the science priorities defined in 2012 by the Census of the Marine Life, but taking into account the new climate change threats and challenges from shifts in ocean carbonate chemistry. The WG will incorporate recommendations from ‘Ocean In High Carbon World-Ocean Acidification international symposium which will be participated by Dr. George (chairman of WG) who will also present a paper on vulnerable deep sea ecosystems to ocean carbonate chemistry, especially seamounts southeast of Australia and New Zealand. The WG plans to develop a follow-on capacity building workshop in the ASLO annual meeting in Hawaii (2017) and in the AGU Ocean Sciences meeting in Portland, Oregon (2018). In 2017, the WG will meet for three days in 2017 at the ASLO annual meeting to generate two open-access publications; 1) the first global assessment of OA on seamount fauna, and 2) a peer-reviewed multi-authored paper to be submitted to NATURE CLIMATE. -
1 Updated Through January 27, 2016 NOTE: the FOLLOWING IS an UNOFFICIAL COMPILATION of FEDERAL REGULATIONS PREPARED in the SOUTH
Updated through January 27, 2016 NOTE: THE FOLLOWING IS AN UNOFFICIAL COMPILATION OF FEDERAL REGULATIONS PREPARED IN THE SOUTHEAST REGIONAL OFFICE OF THE NATIONAL MARINE FISHERIES SERVICE FOR THE INFORMATION AND CONVENIENCE OF INTERESTED PERSONS. IT DOES NOT INCLUDE CHANGES TO THESE REGULATIONS THAT MAY HAVE OCCURRED AFTER THE DATE INDICATED ABOVE. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration (NOAA) National Marine Fisheries Service (NMFS) 50 CFR Part 622 PART 622--FISHERIES OF THE CARIBBEAN, GULF OF MEXICO, AND SOUTH ATLANTIC TABLE OF CONTENTS Subpart A--General Provisions.................................. 8 § 622.1 Purpose and scope. ................................... 8 § 622.2 Definitions and acronyms ............................ 10 § 622.3 Relation to other laws and regulations .............. 20 § 622.4 Permits and fees--general ........................... 21 § 622.5 Recordkeeping and reporting--general ................ 25 § 622.6 Vessel identification ............................... 27 § 622.7 Fishing years ....................................... 28 § 622.8 Quotas--general ..................................... 29 § 622.9 Prohibited gear and methods--general ................ 30 § 622.10 Landing fish intact--general ....................... 31 § 622.11 Bag and possession limits--general applicability ... 32 § 622.12 Annual catch limits (ACLs) and accountability measures (AMs) for Caribbean island management areas/Caribbean EEZ ... 32 § 622.13 Prohibitions--general .............................. 35 § 622.14 -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Spatial Distribution and the Effects of Competition on Some Temperate Scleractinia and Corallimorpharia
MARINE ECOLOGY PROGRESS SERIES Vol. 70: 39-48, 1991 Published February 14 Mar. Ecol. Prog. Ser. ~ Spatial distribution and the effects of competition on some temperate Scleractinia and Corallimorpharia Nanette E. Chadwick* Department of Zoology. University of California, Berkeley. California 94720. USA ABSTRACT: The impact of interference competition on coral community structure is poorly understood. On subtidal rocks in the northeastern Pacific, members of 3 scleractinian coral species (Astrangia lajollaensis, Balanophyllia elegans, Paracyathus stearnsii) and 1 corallimorpharian (Corynactls califor- nica) were examined to determine whether competition exerts substantial influence over the~rabund- ance and distributional patterns. These anthozoans occupy > 50 % cover on hard substrata, and exhibit characteristic patterns of spatial distribution, with vertical zonation and segregation among some species. They interact in an interspecific dominance hierarchy that lacks reversals, and is linear and consistent under laboratory and field conditions. Experiments demonstrated that a competitive domin- ant, C. californica, influences the abundance and population structure of a subordinate. B. elegans, by (1)reducing sexual reproductive output, (2) increasing larval mortality, (3)altering recruitment patterns. Field cross-transplants revealed that the dominant also affects vertical zonation of a competitive intermediate, A. lajollaensis, by lulling polyps that occur near the tops of subtidal rocks. It is concluded that between-species competition,