A New Infaunal Xenophyophore (Xenophyophorea
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Coastal and Marine Ecological Classification Standard (2012)
FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard Marine and Coastal Spatial Data Subcommittee Federal Geographic Data Committee June, 2012 Federal Geographic Data Committee FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard, June 2012 ______________________________________________________________________________________ CONTENTS PAGE 1. Introduction ..................................................................................................................... 1 1.1 Objectives ................................................................................................................ 1 1.2 Need ......................................................................................................................... 2 1.3 Scope ........................................................................................................................ 2 1.4 Application ............................................................................................................... 3 1.5 Relationship to Previous FGDC Standards .............................................................. 4 1.6 Development Procedures ......................................................................................... 5 1.7 Guiding Principles ................................................................................................... 7 1.7.1 Build a Scientifically Sound Ecological Classification .................................... 7 1.7.2 Meet the Needs of a Wide Range of Users ...................................................... -
We Would Like to Thank the Referees for Constructive Review, That Helped Us to Improve the Manuscript
We would like to thank the Referees for constructive review, that helped us to improve the manuscript. Written below are our responses to the Referee’s comments. The comments were reproduced and are followed by our responses. Anonymous Referee #1 This paper presents an interesting multiproxy dataset to document the paleoceanography near Svalbard and compares traditional sedimentary and microfossil proxies with a novel approach involving ancient environmental DNA. As such, the dataset certainly deserves publishing, but I have some comments/reservations about the age model and the discussion of the results. The discussion has some writing-technical issues. In several cases the own results are presented, without clear arguments supporting the interpretation (e.g. P12, L9–11 & L28–30; P15, L12– 15) but rather followed by a literature review. The own results need to be better used to document the paleoceanographic/ environmental signal that is gained from this new site and data, before comparing to the literature. Figures integrating the own results with key records from previous studies is also advised. Major comments Referee’s comment: First of all, the raw data needs to be made publicly available and/or presented with the manuscript. Needed are tables that list unique sample labels and relevant metadata such as core coordinates, sampling depths, measured data for each proxy (sedimentology, foraminifer assemblage data, stable isotopes and aDNA), etc. Response: According to the Reviewer’s suggestion, the raw data will be provided as electronic supplementary material. Referee’s comment: Age model. The ages used for the age model seem arbitrary. What is the argument to choose 1500, 2700 and 7890 yr BP? Those ages are not the average of the 2 sigma calibrated yrs BP. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Marine Ecology Progress Series 245:69
MARINE ECOLOGY PROGRESS SERIES Vol. 245: 69–82, 2002 Published December 18 Mar Ecol Prog Ser Ecology and nutrition of the large agglutinated foraminiferan Bathysiphon capillare in the bathyal NE Atlantic: distribution within the sediment profile and lipid biomarker composition Andrew J. Gooday1,*, David W. Pond1, Samuel S. Bowser2 1Southampton Oceanography Centre, Empress Dock, Southampton SO14 3ZH, United Kingdom 2Wadsworth Center, New York State Department of Health, PO Box 509, Albany, New York 12201-0509, USA ABSTRACT: The large agglutinated foraminiferan Bathysiphon capillare de Folin (Protista) was an important component of the macrofauna in box core samples recovered at a 950 m site on the south- ern flank of the Wyville-Thomson Ridge, northern Rockall Trough. The long, narrow, very smooth, flexible tubes of B. capillare reached a maximum length of almost 10 cm. Densities ranged from 100 to 172 ind. m–2, a figure that represents at least 5 to 9% of metazoan macrofaunal densities. This infaunal species usually adopted a more or less horizontal orientation within the upper 5 cm layer of brownish sandy silt. Its cytoplasm yielded a diverse spectrum of fatty acids. These included various monounsaturated fatty acids (39% of total), mainly 18:1(n-7), 20:1(n-9) and 22:1(n-7), the polyunsat- urated fatty acids (PUFA) 20:4(n-6), 20.5(n-3) and 22.6(n-3), and non-methylene diene-interrupted fatty acids (NMIDS), particularly 22:2∆7,13 and 22:2∆7,15. The spectrum of PUFAs is consistent with the ingestion by B. capillare of phytodetrital material. -
Author's Manuscript (764.7Kb)
1 BROADLY SAMPLED TREE OF EUKARYOTIC LIFE Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Laura Wegener Parfrey1†, Jessica Grant2†, Yonas I. Tekle2,6, Erica Lasek-Nesselquist3,4, Hilary G. Morrison3, Mitchell L. Sogin3, David J. Patterson5, Laura A. Katz1,2,* 1Program in Organismic and Evolutionary Biology, University of Massachusetts, 611 North Pleasant Street, Amherst, Massachusetts 01003, USA 2Department of Biological Sciences, Smith College, 44 College Lane, Northampton, Massachusetts 01063, USA 3Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 4Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Providence, Rhode Island 02912, USA 5Biodiversity Informatics Group, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 6Current address: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 06520, USA †These authors contributed equally *Corresponding author: L.A.K - [email protected] Phone: 413-585-3825, Fax: 413-585-3786 Keywords: Microbial eukaryotes, supergroups, taxon sampling, Rhizaria, systematic error, Excavata 2 An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided eukaryotic diversity into a small number of high-level ‘supergroups’, many of which receive strong support in phylogenomic analyses. However, the abundance of data in phylogenomic analyses can lead to highly supported but incorrect relationships due to systematic phylogenetic error. Further, the paucity of major eukaryotic lineages (19 or fewer) included in these genomic studies may exaggerate systematic error and reduces power to evaluate hypotheses. -
Introduction to Marine Conservation Biology
Network of Conservation Educators & Practitioners Introduction to Marine Conservation Biology Author(s): Tundi Agardy Source: Lessons in Conservation, Vol. 1, pp. 5-43 Published by: Network of Conservation Educators and Practitioners, Center for Biodiversity and Conservation, American Museum of Natural History Stable URL: ncep.amnh.org/linc/ This article is featured in Lessons in Conservation, the official journal of the Network of Conservation Educators and Practitioners (NCEP). NCEP is a collaborative project of the American Museum of Natural History’s Center for Biodiversity and Conservation (CBC) and a number of institutions and individuals around the world. Lessons in Conservation is designed to introduce NCEP teaching and learning resources (or “modules”) to a broad audience. NCEP modules are designed for undergraduate and professional level education. These modules—and many more on a variety of conservation topics—are available for free download at our website, ncep.amnh.org. To learn more about NCEP, visit our website: ncep.amnh.org. All reproduction or distribution must provide full citation of the original work and provide a copyright notice as follows: “Copyright 2007, by the authors of the material and the Center for Biodiversity and Conservation of the American Museum of Natural History. All rights reserved.” Illustrations obtained from the American Museum of Natural History’s library: images.library.amnh.org/digital/ SYNTHESIS 5 Introduction to Marine Conservation Biology Tundi Agardy* *Sound Seas, Bethesda, MD, USA, email -
Deep-Ocean Climate Change Impacts on Habitat, Fish and Fisheries, by Lisa Levin, Maria Baker, and Anthony Thompson (Eds)
ISSN 2070-7010 FAO 638 FISHERIES AND AQUACULTURE TECHNICAL PAPER 638 Deep-ocean climate change impacts on habitat, fish and fisheries Deep-ocean climate change impacts on habitat, fish and fisheries This publication presents the outcome of a meeting between the FAO/UNEP ABNJ Deep-seas and Biodiversity project and the Deep Ocean Stewardship Initiative. It focuses on the impacts of climatic changes on demersal fisheries, and the interactions of these fisheries with other species and vulnerable marine ecosystems. Regional fisheries management organizations rely on scientific information to develop advice to managers. In recent decades, climate change has been a focus largely as a unidirectional forcing over decadal timescales. However, changes can occur abruptly when critical thresholds are crossed. Moreover, distribution changes are expected as populations shift from existing to new areas. Hence, there is a need for new monitoring programmes to help scientists understand how these changes affect productivity and biodiversity. costa = 9,4 mm ISBN 978-92-5-131126-4 ISSN 2070-7010 FA 9 789251 311264 CA2528EN/1/09.19 O Cover image: Time of emergence of seafloor climate changes. Figure 7 in Chapter 8 of this Technical Paper. FAO FISHERIES AND Deep-ocean climate change AQUACULTURE TECHNICAL impacts on habitat, fish and PAPER fisheries 638 Edited by Lisa Levin Center for Marine Biodiversity and Conservation and Integrative Oceanography Division Scripps Institution of Oceanography University of California San Diego United States of America Maria Baker University of Southampton National Oceanography Centre Southampton United Kingdom of Great Britain and Northern Ireland Anthony Thompson Consultant Fisheries and Aquaculture Department Food and Agriculture Organization of the United Nations Rome Italy FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 2018 FAO. -
The Evolution of Early Foraminifera
The evolution of early Foraminifera Jan Pawlowski†‡, Maria Holzmann†,Ce´ dric Berney†, Jose´ Fahrni†, Andrew J. Gooday§, Tomas Cedhagen¶, Andrea Haburaʈ, and Samuel S. Bowserʈ †Department of Zoology and Animal Biology, University of Geneva, Sciences III, 1211 Geneva 4, Switzerland; §Southampton Oceanography Centre, Empress Dock, European Way, Southampton SO14 3ZH, United Kingdom; ¶Department of Marine Ecology, University of Aarhus, Finlandsgade 14, DK-8200 Aarhus N, Denmark; and ʈWadsworth Center, New York State Department of Health, P.O. Box 509, Albany, NY 12201 Communicated by W. A. Berggren, Woods Hole Oceanographic Institution, Woods Hole, MA, August 11, 2003 (received for review January 30, 2003) Fossil Foraminifera appear in the Early Cambrian, at about the same loculus to become globular or tubular, or by the development of time as the first skeletonized metazoans. However, due to the spiral growth (12). The evolution of spiral tests led to the inadequate preservation of early unilocular (single-chambered) formation of internal septae through the development of con- foraminiferal tests and difficulties in their identification, the evo- strictions in the spiral tubular chamber and hence the appear- lution of early foraminifers is poorly understood. By using molec- ance of multilocular forms. ular data from a wide range of extant naked and testate unilocular Because of their poor preservation and the difficulties in- species, we demonstrate that a large radiation of nonfossilized volved in their identification, the unilocular noncalcareous for- unilocular Foraminifera preceded the diversification of multilocular aminifers are largely ignored in paleontological studies. In a lineages during the Carboniferous. Within this radiation, similar previous study, we used molecular data to reveal the presence of test morphologies and wall types developed several times inde- naked foraminifers, perhaps resembling those that lived before pendently. -
BENTHOS Scottish Association for Marine Science October 2002 Authors
DTI Strategic Environmental Assessment 2002 SEA 7 area: BENTHOS Scottish Association for Marine Science October 2002 Authors: Peter Lamont, <[email protected]> Professor John D. Gage, <[email protected]> Scottish Association for Marine Science, Dunstaffnage Marine Laboratory, Oban, PA37 1QA http://www.sams.ac.uk 1 Definition of SEA 7 area The DTI SEA 7 area is defined in Contract No. SEA678_data-03, Section IV – Scope of Services (p31) as UTM projection Zone 30 using ED50 datum and Clarke 1866 projection. The SEA 7 area, indicated on the chart page 34 in Section IV Scope of Services, shows the SEA 7 area to include only the western part of UTM zone 30. This marine part of zone 30 includes the West Coast of Scotland from the latitude of the south tip of the Isle of Man to Cape Wrath. Most of the SEA 7 area indicated as the shaded area of the chart labelled ‘SEA 7’ lies to the west of the ‘Thunderer’ line of longitude (6°W) and includes parts of zones 27, 28 and 29. The industry- adopted convention for these zones west of the ‘Thunderer’ line is the ETRF89 datum. The authors assume that the area for which information is required is as indicated on the chart in Appendix 1 SEA678 areas, page 34, i.e. the west (marine part) of zone 30 and the shaded parts of zones 27, 28 and 29. The Irish Sea boundary between SEA 6 & 7 is taken as from Carlingford Lough to the Isle of Man, then clockwise around the Isle of Man, then north to the Scottish coast around Dumfries. -
Evaluation and Gap Analysis of Current and Potential Indicators for Deep Sea Habitats
Healthy & Biologically Diverse Seas Evidence Group Technical Report Series: Evaluation and gap analysis of current and potential indicators for Deep Sea Habitats A Benn, J A Hughes and T FitzGeorge-Balfour July 2010 © JNCC, Peterborough 2010 ISBN 978-1-86107-623-6 For further information please contact: Joint Nature Conservation Committee Monkstone House City Road Peterborough Cambridgeshire PE1 1JY Email: [email protected] Tel: +44 (0)1733 866905 Fax: +44 (0)1733 555948 Website: www.jncc.gov.uk This report should be cited as: Benn, A., Hughes, J.A. and FitzGeorge-Balfour, T. 2010. Healthy & Biologically Diverse Seas Evidence Group Technical Report Series: Evaluation and gap analysis of current and potential indicators for Deep Sea Habitats Preface The UK Marine Monitoring and Assessment Strategy (UKMMAS) aims to provide coordinated and integrated marine monitoring programmes which support periodic assessments of the state of the UK marine environment. The strategy aims to provide vital data and information necessary to help assess progress towards achieving the UK’s vision of clean, healthy, safe, productive and biologically diverse seas. The overarching strategy is supported and delivered by four evidence groups; Clean and Safe Seas Evidence Group (CSSEG); Productive Seas Evidence Group (PSEG); Healthy and Biologically Diverse Seas Evidence Group (HBDSEG) and Ocean Processes Evidence Group (OPEG). These groups are responsible for implementing monitoring and observations programmes to contribute to ecosystem-based assessments of marine environmental status. As part of the HBDSEG programme of work, a series of reviews of environmental indicators was undertaken for the following marine ecosystem components: 1. Rock and biogenic reef habitats 2. -
Levels of Biotic Organization - Alberto M
BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. I – Levels of Biotic Organization - Alberto M. Simonetta LEVELS OF BIOTIC ORGANIZATION Alberto M. Simonetta Dipartimento di Biologia Animale e Genetica, “L. Pardi,” University of Firenze, Italy Keywords: Morphology, systematics, ecological niche, parasites, symbionts, population. Contents 1. Introduction 2. The Development of Organization at the Individual Level 3. The Development of Organization: Embryology and Cycles 4. The Paleontological Account 5. The Intertaxa Organization and Evolution 6. Symbiosis and Parasitism 7. Conclusion Biographical Sketch Summary The level of biotic organization may be considered from different perspectives and these are briefly outlined. A merely structural level of the individuals is the most traditional approach, but it must be considered that there is a basic difference between a simple structure that is actually primitive and such highly evolved conditions as obtain in some parasitic or symbiotic organisms. Other levels of biotic organization that have to be considered concern the organization of communities and ecosystems, as well as symbioses. A brief discussion is therefore provided for each of the different aspects that biotic organization may take according the perspective from which it is considered. 1. Introduction Living beings may be studied from different, albeit converging perspectives. They may be studied from the simplest level of organization of the individual organism, such as that of procaryotes.UNESCO Then one may consider mo–re andEOLSS more complex levels of individual structure. But we may begin by considering the individual’s interactions with its immediate environment, and then follow the chains and networks of such organisms, until we reach the comprehensive idea of “biosphere” or, perhaps, given the close interactions thatSAMPLE have obtained since the origin CHAPTERS of life, between living organisms and all other components of the ecosystem, up to the so-called Gaia system. -
Systema Naturae. the Classification of Living Organisms
Systema Naturae. The classification of living organisms. c Alexey B. Shipunov v. 5.601 (June 26, 2007) Preface Most of researches agree that kingdom-level classification of living things needs the special rules and principles. Two approaches are possible: (a) tree- based, Hennigian approach will look for main dichotomies inside so-called “Tree of Life”; and (b) space-based, Linnaean approach will look for the key differences inside “Natural System” multidimensional “cloud”. Despite of clear advantages of tree-like approach (easy to develop rules and algorithms; trees are self-explaining), in many cases the space-based approach is still prefer- able, because it let us to summarize any kinds of taxonomically related da- ta and to compare different classifications quite easily. This approach also lead us to four-kingdom classification, but with different groups: Monera, Protista, Vegetabilia and Animalia, which represent different steps of in- creased complexity of living things, from simple prokaryotic cell to compound Nature Precedings : doi:10.1038/npre.2007.241.2 Posted 16 Aug 2007 eukaryotic cell and further to tissue/organ cell systems. The classification Only recent taxa. Viruses are not included. Abbreviations: incertae sedis (i.s.); pro parte (p.p.); sensu lato (s.l.); sedis mutabilis (sed.m.); sedis possi- bilis (sed.poss.); sensu stricto (s.str.); status mutabilis (stat.m.); quotes for “environmental” groups; asterisk for paraphyletic* taxa. 1 Regnum Monera Superphylum Archebacteria Phylum 1. Archebacteria Classis 1(1). Euryarcheota 1 2(2). Nanoarchaeota 3(3). Crenarchaeota 2 Superphylum Bacteria 3 Phylum 2. Firmicutes 4 Classis 1(4). Thermotogae sed.m. 2(5).