Diversity of Feeding in Anthozoa (Cnidaria): a Systematic Review
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Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. -
Octocoral Diversity of Balıkçı Island, the Marmara Sea
J. Black Sea/Mediterranean Environment Vol. 19, No. 1: 46-57 (2013) RESEARCH ARTICLE Octocoral diversity of Balıkçı Island, the Marmara Sea Eda Nur Topçu1,2*, Bayram Öztürk1,2 1Faculty of Fisheries, Istanbul University, Ordu St., No. 200, 34470, Laleli, Istanbul, TURKEY 2Turkish Marine Research Foundation (TUDAV), P.O. Box: 10, Beykoz, Istanbul, TURKEY *Corresponding author: [email protected] Abstract We investigated the octocoral diversity of Balıkçı Island in the Marmara Sea. Three sites were sampled by diving, from 20 to 45 m deep. Nine species were found, two of which are first records for Turkish fauna: Alcyonium coralloides and Paralcyonium spinulosum. Scientific identification of Alcyonium acaule in the Turkish seas was also done for the first time in this study. Key words: Octocoral, soft coral, gorgonian, diversity, Marmara Sea. Introduction The Marmara Sea is a semi-enclosed sea connecting the Black Sea to the Aegean Sea via the Turkish Straits System, with peculiar oceanographic, ecological and geomorphologic characteristics (Öztürk and Öztürk 1996). The benthic fauna consists of Black Sea species until approximately 20 meters around the Prince Islands area, where Mediterranean species take over due to the two layer stratification in the Marmara Sea. The Sea of Marmara, together with the straits of Istanbul and Çanakkale, serves as an ecological barrier, a biological corridor and an acclimatization zone for the biota of Mediterranean and Black Seas (Öztürk and Öztürk 1996). The Islands in the Sea of Marmara constitute habitats particularly for hard bottom communities of Mediterranean origin. Ten Octocoral species were reported by Demir (1954) from the Marmara Sea but amongst them, Gorgonia flabellum was probably reported by mistake and 46 should not be considered as a valid record from the Sea of Marmara. -
Active and Passive Suspension Feeders in a Coralligenous Community
! Chapter_0_Martina 05/06/15 07:23 Página 1 The importance of benthic suspension feeders in the biogeochemical cycles: active and passive suspension feeders in a coralligenous community PhD THESIS Martina Coppari Barcelona, 2015 Chapter_0_Martina 05/06/15 07:23 Página 2 Photos by: Federico Betti, Georgios Tsounis Design: Antonio Secilla Chapter_0_Martina 05/06/15 07:23 Página 3 The importance of benthic suspension feeders in the biogeochemical cycles: active and passive suspension feeders in a coralligenous community PhD THESIS MARTINA COPPARI Universitat Autònoma de Barcelona Institut de Ciència i Tecnologia Ambientals PhD Programme in Environmental Science and Technology June 2015 Director de la Tesi Director de la Tesi Dr. Sergio Rossi Dr. Andrea Gori Investigador Investigador Universitat Autònoma de Barcelona Universitat de Barcelona Institut de Ciència i Tecnologia Ambientals Departament d’Ecologia • 3 • Chapter_0_Martina 05/06/15 07:23 Página 4 . Chapter_0_Martina 05/06/15 07:23 Página 5 Para los que me han acompañado en este viaje • 5 • Chapter_0_Martina 05/06/15 07:23 Página 6 . Chapter_0_Martina 05/06/15 07:23 Página 7 Resumen 11 Abstract 13 Introduction 15 Chapter 1 Size, spatial and bathymetrical distribution of the ascidian Halocynthia papillosa in Mediterranean coastal bottoms: benthic-pelagic implications 29 1. Introduction ......................................................................................................................................................30 2. Materials -
MARINE FAUNA and FLORA of BERMUDA a Systematic Guide to the Identification of Marine Organisms
MARINE FAUNA AND FLORA OF BERMUDA A Systematic Guide to the Identification of Marine Organisms Edited by WOLFGANG STERRER Bermuda Biological Station St. George's, Bermuda in cooperation with Christiane Schoepfer-Sterrer and 63 text contributors A Wiley-Interscience Publication JOHN WILEY & SONS New York Chichester Brisbane Toronto Singapore ANTHOZOA 159 sucker) on the exumbrella. Color vari many Actiniaria and Ceriantharia can able, mostly greenish gray-blue, the move if exposed to unfavorable condi greenish color due to zooxanthellae tions. Actiniaria can creep along on their embedded in the mesoglea. Polyp pedal discs at 8-10 cm/hr, pull themselves slender; strobilation of the monodisc by their tentacles, move by peristalsis type. Medusae are found, upside through loose sediment, float in currents, down and usually in large congrega and even swim by coordinated tentacular tions, on the muddy bottoms of in motion. shore bays and ponds. Both subclasses are represented in Ber W. STERRER muda. Because the orders are so diverse morphologically, they are often discussed separately. In some classifications the an Class Anthozoa (Corals, anemones) thozoan orders are grouped into 3 (not the 2 considered here) subclasses, splitting off CHARACTERISTICS: Exclusively polypoid, sol the Ceriantharia and Antipatharia into a itary or colonial eNIDARIA. Oral end ex separate subclass, the Ceriantipatharia. panded into oral disc which bears the mouth and Corallimorpharia are sometimes consid one or more rings of hollow tentacles. ered a suborder of Scleractinia. Approxi Stomodeum well developed, often with 1 or 2 mately 6,500 species of Anthozoa are siphonoglyphs. Gastrovascular cavity compart known. Of 93 species reported from Ber mentalized by radially arranged mesenteries. -
Corallimorph and Montipora Reefs in Ulithi Atoll, Micronesia: Documenting Unusual Reefs
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/303060119 Corallimorph and Montipora Reefs in Ulithi Atoll, Micronesia: documenting unusual reefs Article · May 2016 DOI: 10.5281/zenodo.51289 CITATIONS READS 0 174 6 authors, including: Nicole Crane Peter Ansgar Nelson Cabrillo Community College District University of California, Santa Cruz 21 PUBLICATIONS 248 CITATIONS 26 PUBLICATIONS 272 CITATIONS SEE PROFILE SEE PROFILE Giacomo Bernardi University of California, Santa Cruz 367 PUBLICATIONS 4,728 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: One People One Reef: Micronesian outer islands View project Stay or Go View project All content following this page was uploaded by Nicole Crane on 13 May 2016. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. Corallimorph and Montipora Reefs in Ulithi Atoll, Micronesia: documenting unusual reefs NICOLE L. CRANE Department of Biology, Cabrillo College, 6500 Soquel Drive, Aptos, CA 95003, USA Oceanic Society, P.O. Box 844, Ross, CA 94957, USA One People One Reef, 100 Shaffer Road, Santa Cruz, CA 95060, USA MICHELLE J. PADDACK Santa Barbara City College, Santa Barbara, CA 93109, USA Oceanic Society, P.O. Box 844, Ross, CA 94957, USA One People One Reef, 100 Shaffer Road, Santa Cruz, CA 95060, USA PETER A. NELSON H. T. Harvey & Associates, Los Gatos, CA 95032, USA Institute of Marine Science, University of California Santa Cruz, CA 95060, USA One People One Reef, 100 Shaffer Road, Santa Cruz, CA 95060, USA AVIGDOR ABELSON Department of Zoology, Tel Aviv University, Ramat Aviv, 69978, Israel One People One Reef, 100 Shaffer Road, Santa Cruz, CA 95060, USA JOHN RULMAL, JR. -
End-Permian Mass Extinction in the Oceans: an Ancient Analog for the Twenty-First Century?
EA40CH05-Payne ARI 23 March 2012 10:24 End-Permian Mass Extinction in the Oceans: An Ancient Analog for the Twenty-First Century? Jonathan L. Payne1 and Matthew E. Clapham2 1Department of Geological and Environmental Sciences, Stanford University, Stanford, California 94305; email: [email protected] 2Department of Earth and Planetary Sciences, University of California, Santa Cruz, California 95064; email: [email protected] Annu. Rev. Earth Planet. Sci. 2012. 40:89–111 Keywords First published online as a Review in Advance on ocean acidification, evolution, isotope geochemistry, volcanism, January 3, 2012 biodiversity The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The greatest loss of biodiversity in the history of animal life occurred at the 10.1146/annurev-earth-042711-105329 end of the Permian Period (∼252 million years ago). This biotic catastro- Annu. Rev. Earth Planet. Sci. 2012.40:89-111. Downloaded from www.annualreviews.org Copyright c 2012 by Annual Reviews. phe coincided with an interval of widespread ocean anoxia and the eruption All rights reserved of one of Earth’s largest continental flood basalt provinces, the Siberian by Stanford University - Main Campus Robert Crown Law Library on 06/04/12. For personal use only. 0084-6597/12/0530-0089$20.00 Traps. Volatile release from basaltic magma and sedimentary strata dur- ing emplacement of the Siberian Traps can account for most end-Permian paleontological and geochemical observations. Climate change and, per- haps, destruction of the ozone layer can explain extinctions on land, whereas changes in ocean oxygen levels, CO2, pH, and temperature can account for extinction selectivity across marine animals. -
Preliminary Report on the Octocorals (Cnidaria: Anthozoa: Octocorallia) from the Ogasawara Islands
国立科博専報,(52), pp. 65–94 , 2018 年 3 月 28 日 Mem. Natl. Mus. Nat. Sci., Tokyo, (52), pp. 65–94, March 28, 2018 Preliminary Report on the Octocorals (Cnidaria: Anthozoa: Octocorallia) from the Ogasawara Islands Yukimitsu Imahara1* and Hiroshi Namikawa2 1Wakayama Laboratory, Biological Institute on Kuroshio, 300–11 Kire, Wakayama, Wakayama 640–0351, Japan *E-mail: [email protected] 2Showa Memorial Institute, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki 305–0005, Japan Abstract. Approximately 400 octocoral specimens were collected from the Ogasawara Islands by SCUBA diving during 2013–2016 and by dredging surveys by the R/V Koyo of the Tokyo Met- ropolitan Ogasawara Fisheries Center in 2014 as part of the project “Biological Properties of Bio- diversity Hotspots in Japan” at the National Museum of Nature and Science. Here we report on 52 lots of these octocoral specimens that have been identified to 42 species thus far. The specimens include seven species of three genera in two families of Stolonifera, 25 species of ten genera in two families of Alcyoniina, one species of Scleraxonia, and nine species of four genera in three families of Pennatulacea. Among them, three species of Stolonifera: Clavularia cf. durum Hick- son, C. cf. margaritiferae Thomson & Henderson and C. cf. repens Thomson & Henderson, and five species of Alcyoniina: Lobophytum variatum Tixier-Durivault, L. cf. mirabile Tixier- Durivault, Lohowia koosi Alderslade, Sarcophyton cf. boletiforme Tixier-Durivault and Sinularia linnei Ofwegen, are new to Japan. In particular, Lohowia koosi is the first discovery since the orig- inal description from the east coast of Australia. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Final Determination of White's Seahorse
Final Determination July 2019 White’s seahorse Hippocampus whitei Listing Category: Endangered IUCN Category: EN [A2bc] The Fisheries Scientific Committee, established under Part 7A of the Fisheries Management Act 1994 (the Act), has made a Final Determination to list the Hippocampus whitei (White’s Seahorse) as an ENDANGERED SPECIES in Part 1 of Schedule 4 of the Act. The Fisheries Scientific Committee, with reference to the criteria relevant to this species, prescribed by Part 16 of the Fisheries Management (General) Regulation 2010 (the Regulation) has assessed and determined that: The listing of ENDANGERED is provided for by Part 7A, Division 2 of the Act. The assessment has been determined in accordance with the national Common Assessment Method (CAM), which provides a nationally consistent approach to the assessing and listing of threatened species in Australia. Species information and status a) Species: Hippocampus whitei – White’s Seahorse, Bleeker, 1855 (family Syngnathidae) is a valid, recognised taxon and is a species as defined in the Act. The species is endemic to NSW and QLD in eastern Australia. b) Taxonomy Hippocampus whitei was first discovered in 1789 in Port Jackson (Sydney Harbour) and named after John White, surgeon general to the first fleet and author of Journal of a Voyage to New South Wales 1789, in which a portrait of H. whitei is published and was described by Bleeker in 1855. Hippocampus novaehollandiae Steindachner, 1866 is a synonym. In 2016, H. procerus was determined to be a synonym of H. whitei as there were no morphological or genetic differences between individuals of the two species (Lourie et al., 2016; .Short et al., in press). -
Alcyonium Digitatum
Maine 2015 Wildlife Action Plan Revision Report Date: January 13, 2016 Alcyonium digitatum (Dead Man's Fingers) Priority 3 Species of Greatest Conservation Need (SGCN) Class: Anthozoa (Corals, Sea Pens, Sea Fans, Sea Anemones) Order: Alcyonacea (Soft Corals) Family: Alcyoniidae (Soft Corals) General comments: none No Species Conservation Range Maps Available for Dead Man's Fingers SGCN Priority Ranking - Designation Criteria: Risk of Extirpation: NA State Special Concern or NMFS Species of Concern: NA Recent Significant Declines: NA Regional Endemic: NA High Regional Conservation Priority: NA High Climate Change Vulnerability: Alcyonium digitatum is highly vulnerable to climate change. Understudied rare taxa: Recently documented or poorly surveyed rare species for which risk of extirpation is potentially high (e.g. few known occurrences) but insufficient data exist to conclusively assess distribution and status. *criteria only qualifies for Priority 3 level SGCN* Notes: Historical: NA Culturally Significant: NA Habitats Assigned to Dead Man's Fingers: Formation Name Subtidal Macrogroup Name Subtidal Bedrock Bottom Habitat System Name: Erect Epifauna Macrogroup Name Subtidal Coarse Gravel Bottom Habitat System Name: Erect Epifauna Macrogroup Name Subtidal Mud Bottom Habitat System Name: Unvegetated Macrogroup Name Subtidal Sand Bottom Habitat System Name: Unvegetated Stressors Assigned to Dead Man's Fingers: No Stressors Currently Assigned to Dead Man's Fingers or other Priority 3 SGCN. Species Level Conservation Actions Assigned to Dead