Num. of significant sequences

IP:Flag-TIFA + IP:Flag-TIFA + IP:Flag-TIFA + IP:Flag-TIFA IP:Flag-TIFA IP:Flag-TIFA IP: Flag-mock IP: Flag-mock Database Accession ID name H. pylori H. pylori H. pylori n.i. n.i. n.i. + H. pylori n.i. 2',3'-cyclic-nucleotide 3'- SwissProt CN37_HUMAN 1267 phosphodiesterase OS=Homo 12 9 sapiens GN=CNP PE=1 SV=2 40S S10 SwissProt RS10_HUMAN 6204 OS=Homo sapiens GN=RPS10 PE=1 2 4 1 1 2 1 SV=1 40S ribosomal protein S11 SwissProt RS11_HUMAN 6205 OS=Homo sapiens GN=RPS11 PE=1 8 5 2 4 7 2 SV=3 40S ribosomal protein S18 SwissProt RS18_HUMAN 6222 OS=Homo sapiens GN=RPS18 PE=1 8 9 7 3 7 3 SV=3 SwissProt RS2_HUMAN 6187 OS=Homo sapiens GN=RPS2 PE=1 6 2 SV=2 40S ribosomal protein S25 SwissProt RS25_HUMAN 6230 OS=Homo sapiens GN=RPS25 PE=1 9 7 5 3 7 6 SV=1 40S ribosomal protein S28 SwissProt RS28_HUMAN 6234 OS=Homo sapiens GN=RPS28 PE=1 2 4 1 2 SV=1 SwissProt RS3_HUMAN 6188 OS=Homo sapiens GN=RPS3 PE=1 5 10 1 1 6 1 SV=2 40S ribosomal protein S3a SwissProt RS3A_HUMAN RPS3A OS=Homo sapiens GN=RPS3A 2 4 2 1 2 1 PE=1 SV=2 40S SwissProt RS6_HUMAN 6194 OS=Homo sapiens GN=RPS6 PE=1 3 2 SV=1 60 kDa heat shock protein, SwissProt CH60_HUMAN 3329 mitochondrial OS=Homo sapiens 3 7 1 2 GN=HSPD1 PE=1 SV=2 60S ribosomal protein L23 SwissProt RL23_HUMAN 9349 OS=Homo sapiens GN=RPL23 PE=1 3 4 1 2 4 1 SV=1 60S ribosomal protein L37a SwissProt RL37A_HUMAN 6168 OS=Homo sapiens GN=RPL37A 5 6 3 2 6 2 1 PE=1 SV=2 SwissProt RL5_HUMAN 6125 OS=Homo sapiens GN=RPL5 PE=1 4 3 SV=3 6-phosphofructo-2- kinase/fructose-2,6- SwissProt F263_HUMAN 5209 5 10 1 2 2 bisphosphatase 3 OS=Homo sapiens GN=PFKFB3 PE=1 SV=1 Actin, cytoplasmic 1 OS=Homo SwissProt ACTB_HUMAN 60 6 sapiens GN=ACTB PE=1 SV=1 Alpha-actinin-4 OS=Homo sapiens SwissProt ACTN4_HUMAN 81 3 GN=ACTN4 PE=1 SV=2 Annexin A2 OS=Homo sapiens SwissProt ANXA2_HUMAN 302 1 5 GN=ANXA2 PE=1 SV=2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing SwissProt ACAP2_HUMAN 23527 5 1 1 protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3

ATP synthase subunit alpha, SwissProt ATPA_HUMAN 498 mitochondrial OS=Homo sapiens 4 2 GN=ATP5A1 PE=1 SV=1 ATP synthase subunit beta, SwissProt ATPB_HUMAN 506 mitochondrial OS=Homo sapiens 1 5 1 4 GN=ATP5B PE=1 SV=3 ATP-dependent RNA helicase SwissProt DDX3X_HUMAN 1654 DDX3X OS=Homo sapiens 4 GN=DDX3X PE=1 SV=3 BTB/POZ domain-containing SwissProt KCD17_HUMAN 79734 protein KCTD17 OS=Homo sapiens 3 GN=KCTD17 PE=1 SV=3 BTB/POZ domain-containing SwissProt KCTD2_HUMAN 23510 protein KCTD2 OS=Homo sapiens 3 1 2 1 1 GN=KCTD2 PE=1 SV=3 BTB/POZ domain-containing SwissProt KCTD5_HUMAN 54442 protein KCTD5 OS=Homo sapiens 6 4 4 6 3 2 1 1 GN=KCTD5 PE=1 SV=1 Cytosolic purine 5'-nucleotidase SwissProt 5NTC_HUMAN 22978 OS=Homo sapiens GN=NT5C2 1 12 1 8 PE=1 SV=1

Dipeptidyl peptidase 2 OS=Homo SwissProt DPP2_HUMAN 29952 3 sapiens GN=DPP7 PE=1 SV=3 E3 ubiquitin-protein ligase TRIM21 SwissProt RO52_HUMAN 6737 OS=Homo sapiens GN=TRIM21 1 5 PE=1 SV=1 1-alpha 1 SwissProt EF1A1_HUMAN 1915 OS=Homo sapiens GN=EEF1A1 8 9 1 6 9 1 PE=1 SV=1 Elongation factor 1-delta SwissProt EF1D_HUMAN 1936 OS=Homo sapiens GN=EEF1D PE=1 2 5 1 1 3 1 SV=5 Elongation factor 1-gamma SwissProt EF1G_HUMAN 1937 OS=Homo sapiens GN=EEF1G PE=1 8 10 6 5 9 4 SV=3

Eukaryotic initiation SwissProt EIF3I_HUMAN 8668 factor 3 subunit I OS=Homo 3 1 sapiens GN=EIF3I PE=1 SV=1 Filamin-A OS=Homo sapiens SwissProt FLNA_HUMAN 2316 19 26 3 11 16 3 GN=FLNA PE=1 SV=4 Heat shock cognate 71 kDa SwissProt HSP7C_HUMAN 3312 protein OS=Homo sapiens 8 14 1 3 14 1 GN=HSPA8 PE=1 SV=1 Heat shock protein HSP 90-alpha SwissProt HS90A_HUMAN 3320 OS=Homo sapiens GN=HSP90AA1 9 PE=1 SV=5 Heterogeneous nuclear SwissProt HNRPK_HUMAN 3190 ribonucleoprotein K OS=Homo 4 1 sapiens GN=HNRNPK PE=1 SV=1 Keratin, type I cytoskeletal 18 SwissProt K1C18_HUMAN 3875 OS=Homo sapiens GN=KRT18 PE=1 3 1 2 2 SV=2 Kinesin-like protein KIF11 SwissProt KIF11_HUMAN 3832 OS=Homo sapiens GN=KIF11 PE=1 9 3 6 1 SV=2 LIM domain only protein 7 SwissProt LMO7_HUMAN 4008 OS=Homo sapiens GN=LMO7 PE=1 12 5 SV=3 Methylosome protein 50 SwissProt MEP50_HUMAN 79084 OS=Homo sapiens GN=WDR77 4 10 1 5 6 PE=1 SV=1 Myosin-9 OS=Homo sapiens SwissProt MYH9_HUMAN 4627 6 1 2 GN=MYH9 PE=1 SV=4 Myotubularin-related protein 14 SwissProt MTMRE_HUMAN64419 OS=Homo sapiens GN=MTMR14 2 3 2 PE=1 SV=2 Non-POU domain-containing octamer-binding protein SwissProt NONO_HUMAN 4841 1 4 1 2 OS=Homo sapiens GN=NONO PE=1 SV=4 Nuclear speckle splicing regulatory SwissProt NSRP1_HUMAN 84081 protein 1 OS=Homo sapiens 9 6 GN=NSRP1 PE=1 SV=1 Nuclease-sensitive element- SwissProt YBOX1_HUMAN 4904 binding protein 1 OS=Homo 4 7 6 3 4 4 sapiens GN=YBX1 PE=1 SV=3 Peptidyl-prolyl cis-trans isomerase SwissProt PPIB_HUMAN 5479 B OS=Homo sapiens GN=PPIB 3 3 2 1 PE=1 SV=2 Probable ATP-dependent RNA SwissProt DHX35_HUMAN 60625 helicase DHX35 OS=Homo sapiens 1 6 1 GN=DHX35 PE=1 SV=2

Protein arginine N- SwissProt ANM5_HUMAN 10419 methyltransferase 5 OS=Homo 8 23 1 5 12 1 sapiens GN=PRMT5 PE=1 SV=4

Protein phosphatase 1B OS=Homo SwissProt PPM1B_HUMAN 5495 18 19 2 14 17 sapiens GN=PPM1B PE=1 SV=1 Ras GTPase-activating protein- SwissProt G3BP1_HUMAN 10146 binding protein 1 OS=Homo 8 5 sapiens GN=G3BP1 PE=1 SV=1

RNA-binding protein 10 OS=Homo SwissProt RBM10_HUMAN 8241 15 6 11 2 sapiens GN=RBM10 PE=1 SV=3

RNA-binding protein FUS SwissProt FUS_HUMAN 2521 OS=Homo sapiens GN=FUS PE=1 2 3 2 1 SV=1 S-adenosylmethionine synthase SwissProt METK2_HUMAN 4144 isoform type-2 OS=Homo sapiens 2 6 1 2 GN=MAT2A PE=1 SV=1 Serine/threonine-protein kinase SwissProt STK38_HUMAN 11329 38 OS=Homo sapiens GN=STK38 6 12 3 9 PE=1 SV=1 Serine/threonine-protein kinase SwissProt RIOK1_HUMAN 83732 RIO1 OS=Homo sapiens GN=RIOK1 6 2 2 PE=1 SV=2

Small nuclear ribonucleoprotein SwissProt SMD2_HUMAN 6633 Sm D2 OS=Homo sapiens 1 3 2 1 GN=SNRPD2 PE=1 SV=1

Small nuclear ribonucleoprotein SwissProt SMD3_HUMAN 6634 Sm D3 OS=Homo sapiens 2 6 1 5 1 GN=SNRPD3 PE=1 SV=1

Small nuclear ribonucleoprotein- associated B and B' SwissProt RSMB_HUMAN 6628 5 1 4 OS=Homo sapiens GN=SNRPB PE=1 SV=2 Splicing factor, proline- and SwissProt SFPQ_HUMAN 6421 glutamine-rich OS=Homo sapiens 1 3 1 1 2 1 GN=SFPQ PE=1 SV=2 Stress-70 protein, mitochondrial SwissProt GRP75_HUMAN 3313 OS=Homo sapiens GN=HSPA9 5 3 PE=1 SV=2 T-complex protein 1 subunit beta SwissProt TCPB_HUMAN 10576 OS=Homo sapiens GN=CCT2 PE=1 4 2 SV=4 T-complex protein 1 subunit SwissProt TCPE_HUMAN 22948 epsilon OS=Homo sapiens 6 2 2 GN=CCT5 PE=1 SV=1 T-complex protein 1 subunit eta SwissProt TCPH_HUMAN 10574 OS=Homo sapiens GN=CCT7 PE=1 6 1 SV=2 T-complex protein 1 subunit SwissProt TCPG_HUMAN 7203 gamma OS=Homo sapiens 2 8 7 GN=CCT3 PE=1 SV=4 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 SwissProt TAB2_HUMAN 23118 4 4 1 2 3 OS=Homo sapiens GN=TAB2 PE=1 SV=1

Thyroid hormone receptor- SwissProt TR150_HUMAN 9967 associated protein 3 OS=Homo 6 4 7 2 sapiens GN=THRAP3 PE=1 SV=2 in-house TIFA-Flag 11 8 9 6 10 4 1 TNF receptor-associated factor 2 SwissProt TRAF2_HUMAN 7186 OS=Homo sapiens GN=TRAF2 PE=1 3 SV=2 Transcription TFIID SwissProt TAF4_HUMAN 6874 subunit 4 OS=Homo sapiens 2 3 2 GN=TAF4 PE=1 SV=2 Transitional endoplasmic SwissProt TERA_HUMAN 7415 reticulum ATPase OS=Homo 9 6 sapiens GN=VCP PE=1 SV=4 Tubulin alpha-1B chain OS=Homo SwissProt TBA1B_HUMAN 10376 7 sapiens GN=TUBA1B PE=1 SV=1 Tubulin beta chain OS=Homo SwissProt TBB5_HUMAN 203068 8 4 sapiens GN=TUBB PE=1 SV=2 Tubulin beta-4A chain OS=Homo SwissProt TBB4A_HUMAN 10382 6 sapiens GN=TUBB4A PE=1 SV=2 Tyrosine-protein kinase JAK1 SwissProt JAK1_HUMAN 3716 OS=Homo sapiens GN=JAK1 PE=1 3 SV=2 U4/U6.U5 tri-snRNP-associated SwissProt SNUT1_HUMAN 9092 protein 1 OS=Homo sapiens 3 1 GN=SART1 PE=1 SV=1 Ubiquitin-40S ribosomal protein SwissProt RS27A_HUMAN 6233 S27a OS=Homo sapiens 3 3 2 3 1 GN=RPS27A PE=1 SV=2 Uncharacterized protein C11orf84 SwissProt CK084_HUMAN 144097 OS=Homo sapiens GN=C11orf84 3 8 4 5 PE=1 SV=3